View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17052_low_14 (Length: 315)

Name: NF17052_low_14
Description: NF17052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17052_low_14
NF17052_low_14
[»] chr1 (1 HSPs)
chr1 (2-298)||(3760327-3760622)


Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 2 - 298
Target Start/End: Original strand, 3760327 - 3760622
Alignment:
Q  2 ggagtatgtttttaatgagttgagtatgatgaaaaggacattgctaaatcatgtggaggtgagaacatataactaatctaaagcctctcatttggtaaag 101  Q
    ||||||||||||||||||||||||||| |||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  3760327 ggagtatgtttttaatgagttgagtatcatgacaatgacattgctaaattatgtggaggtgagaacatataactaatctaaagcctcttatt-ggtaaag 3760425  T
Q  102 cgatgtttttcattgaaatgtgtacgtgtcttggtgtatgtgtattgtgtatttttgtagttgtcatagaatctgctannnnnnngaaatgatcaagaat 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||    
T  3760426 cgatgtttttcattgaaatgtgtacgtgtcttggtgtatgtgtattgtgtatttttgtagttgtcatagaatctgctatttttttgaaatgatcaagaat 3760525  T
Q  202 atgatagaaagaagagtaaatggggtactttgattgttatgatcaaaagaaagtgttgttgggatacgttaattttctcgatcatgataaagcattc 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3760526 atgatagaaagaagagtaaatggggtactttgattgttatgatcaaaagaaagtgttgttgggatacgttaattttctcgatcatgataaagcattc 3760622  T

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