View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17052_low_15 (Length: 312)
Name: NF17052_low_15
Description: NF17052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17052_low_15 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 312
Target Start/End: Original strand, 32541259 - 32541562
Alignment:
| Q |
18 |
caaccaaaggaagaaaaaggtacaacagagagtttagaggggtacaagtaaaaggaatccaaaactgtagctttgcattgatctcaataccatctttata |
117 |
Q |
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| T |
32541259 |
caaccaaaggaagaaaaaggtacaacagagagtttagaggggtacaagtaaaaggaatccaaaactgtagctttgcattgatctcaataccatctttata |
32541358 |
T |
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| Q |
118 |
tccagtac-----cgttcaataattccatgtagttctcattcttcttgggcacctaatttgtcacgctagcctgaaacatttgtctgttggctcaccaca |
212 |
Q |
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| T |
32541359 |
tccagtaccgtaccgttcaataattccatgtggttctcattcttcttgagcacctaatttgtcacgctagcctgaaacatttgtctgttggctcaccaca |
32541458 |
T |
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| Q |
213 |
cgtgataaatgtgtctgattgcagtaagtgataccattaaaaatgtcactatatatacaataataaagaaagaggctagaaac----ctcatgactcttg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
32541459 |
cgtgataaatgtgtctgattgcagtaagtgataccattaaaaatgtcactatatatacaataatcaagaaagaggctagaaaccttactcatgactcttg |
32541558 |
T |
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| Q |
309 |
tctt |
312 |
Q |
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|||| |
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| T |
32541559 |
tctt |
32541562 |
T |
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