View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17052_low_18 (Length: 262)
Name: NF17052_low_18
Description: NF17052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17052_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 51545054 - 51544800
Alignment:
| Q |
1 |
ggtccaaagagcctgccaaaaaatgaagttatgtcatgtgctgacaatgtaatggataatgtttttgattatttaaaggaacttaacaaaggtttaactc |
100 |
Q |
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| T |
51545054 |
ggtccaaagagtctgccaaaaaatgaagttatgccatgtgctgacaatgtaatggataatgtttttgattatttaaaggaacttaacaaaggtttaactc |
51544955 |
T |
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| Q |
101 |
aactttgtatccttggaaaagacattgcccgttcactatcttacacttactaccatatgcctactaactctgatacattatttacaattttatttatttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
51544954 |
aactttgtatccttggaaaagacattgcccgttcactatcttacacttactaccatatgcctactaactctgatacattatttacaattttatttttttt |
51544855 |
T |
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| Q |
201 |
taaatagcaaatatcatagttacaattaatagactacactttcatacctatgctt |
255 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
51544854 |
taaatagcaaatatcatagttacaattaatagactacactttcatacctgtgctt |
51544800 |
T |
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