View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17052_low_21 (Length: 236)

Name: NF17052_low_21
Description: NF17052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17052_low_21
NF17052_low_21
[»] chr7 (17 HSPs)
chr7 (60-221)||(12468936-12469103)
chr7 (66-221)||(1545554-1545712)
chr7 (66-212)||(7947955-7948102)
chr7 (66-204)||(25621050-25621190)
chr7 (72-212)||(7524680-7524824)
chr7 (89-156)||(41131966-41132035)
chr7 (90-212)||(11993851-11993975)
chr7 (90-201)||(4978777-4978893)
chr7 (66-156)||(9022536-9022628)
chr7 (66-212)||(15682861-15683009)
chr7 (1-41)||(7948110-7948150)
chr7 (1-41)||(1545720-1545760)
chr7 (164-212)||(14628699-14628747)
chr7 (7-41)||(11994019-11994053)
chr7 (72-121)||(5531770-5531819)
chr7 (167-212)||(17600722-17600767)
chr7 (167-212)||(20146003-20146048)
[»] chr8 (21 HSPs)
chr8 (66-221)||(32352199-32352358)
chr8 (66-221)||(32368860-32369019)
chr8 (66-221)||(5892613-5892771)
chr8 (66-185)||(22449988-22450111)
chr8 (66-209)||(28291502-28291650)
chr8 (83-212)||(41651940-41652074)
chr8 (83-210)||(15340853-15340984)
chr8 (83-210)||(15429918-15430049)
chr8 (83-210)||(15521222-15521353)
chr8 (136-212)||(22454647-22454725)
chr8 (66-162)||(23355469-23355567)
chr8 (83-162)||(6017577-6017657)
chr8 (66-212)||(19709429-19709580)
chr8 (66-198)||(28862416-28862553)
chr8 (66-156)||(11030674-11030766)
chr8 (66-117)||(27123668-27123719)
chr8 (66-115)||(10600223-10600272)
chr8 (167-212)||(28371225-28371270)
chr8 (164-204)||(18672098-18672138)
chr8 (1-41)||(28291658-28291698)
chr8 (168-212)||(30913010-30913054)
[»] chr6 (16 HSPs)
chr6 (66-209)||(17352718-17352865)
chr6 (72-200)||(28712397-28712529)
chr6 (89-209)||(241975-242099)
chr6 (66-212)||(16793298-16793450)
chr6 (83-212)||(24154097-24154230)
chr6 (60-212)||(19723812-19723968)
chr6 (72-212)||(16142870-16143016)
chr6 (91-197)||(10163208-10163317)
chr6 (83-221)||(13002765-13002907)
chr6 (90-212)||(34992415-34992539)
chr6 (72-212)||(16142566-16142712)
chr6 (83-212)||(16143187-16143321)
chr6 (60-211)||(22259178-22259334)
chr6 (89-162)||(11744583-11744658)
chr6 (168-211)||(6470107-6470150)
chr6 (66-176)||(4031008-4031122)
[»] chr4 (11 HSPs)
chr4 (107-221)||(16647112-16647228)
chr4 (67-221)||(24924889-24925047)
chr4 (83-212)||(12424797-12424928)
chr4 (83-195)||(16288778-16288894)
chr4 (66-221)||(26654055-26654214)
chr4 (66-121)||(4697487-4697542)
chr4 (66-162)||(12568149-12568247)
chr4 (106-156)||(41457566-41457618)
chr4 (93-212)||(16928549-16928674)
chr4 (164-212)||(4697591-4697639)
chr4 (164-212)||(9409140-9409188)
[»] chr2 (16 HSPs)
chr2 (73-212)||(17676588-17676731)
chr2 (72-212)||(32890418-32890562)
chr2 (73-162)||(17636730-17636821)
chr2 (89-212)||(15437975-15438103)
chr2 (66-209)||(2482037-2482184)
chr2 (107-197)||(19919462-19919553)
chr2 (66-212)||(17161933-17162083)
chr2 (66-212)||(21498054-21498204)
chr2 (83-162)||(28760644-28760725)
chr2 (66-221)||(30999827-30999984)
chr2 (60-162)||(16467286-16467388)
chr2 (89-212)||(23389159-23389283)
chr2 (168-212)||(31475894-31475938)
chr2 (66-121)||(29891335-29891390)
chr2 (89-212)||(31404019-31404148)
chr2 (1-40)||(17162092-17162132)
[»] chr3 (19 HSPs)
chr3 (60-212)||(45279854-45280006)
chr3 (66-209)||(17439054-17439201)
chr3 (72-209)||(15987590-15987731)
chr3 (72-212)||(25321179-25321321)
chr3 (66-221)||(4026310-4026466)
chr3 (66-212)||(53589044-53589198)
chr3 (72-221)||(17132724-17132877)
chr3 (90-212)||(44450800-44450924)
chr3 (66-212)||(1745104-1745253)
chr3 (90-212)||(14132047-14132173)
chr3 (66-212)||(27717900-27718050)
chr3 (66-200)||(12145019-12145157)
chr3 (66-221)||(4022646-4022802)
chr3 (84-212)||(15759622-15759757)
chr3 (66-140)||(7536130-7536206)
chr3 (83-162)||(48896074-48896155)
chr3 (7-41)||(44450968-44451002)
chr3 (1-34)||(4022830-4022863)
chr3 (8-41)||(25321132-25321165)
[»] chr5 (17 HSPs)
chr5 (66-215)||(10236069-10236220)
chr5 (60-204)||(24663563-24663711)
chr5 (72-203)||(31532979-31533114)
chr5 (66-162)||(30985533-30985629)
chr5 (90-212)||(9423165-9423291)
chr5 (66-162)||(24309068-24309165)
chr5 (66-162)||(24364161-24364258)
chr5 (66-139)||(22987745-22987820)
chr5 (164-221)||(30984777-30984834)
chr5 (72-138)||(25667284-25667352)
chr5 (1-41)||(10236021-10236061)
chr5 (66-162)||(22848034-22848132)
chr5 (72-212)||(21390682-21390826)
chr5 (144-199)||(28619255-28619312)
chr5 (167-212)||(23379360-23379405)
chr5 (66-212)||(36499485-36499636)
chr5 (1-41)||(30985637-30985677)
[»] scaffold0431 (1 HSPs)
scaffold0431 (83-212)||(5047-5178)
[»] chr1 (10 HSPs)
chr1 (66-221)||(13962889-13963045)
chr1 (90-221)||(24633233-24633368)
chr1 (83-212)||(11821864-11821995)
chr1 (84-199)||(25018683-25018802)
chr1 (83-162)||(23455190-23455271)
chr1 (67-200)||(33379297-33379434)
chr1 (84-148)||(22785097-22785161)
chr1 (6-41)||(25018621-25018656)
chr1 (66-134)||(24115243-24115309)
chr1 (1-41)||(24633400-24633440)
[»] scaffold0148 (1 HSPs)
scaffold0148 (84-211)||(23042-23171)
[»] scaffold0024 (1 HSPs)
scaffold0024 (72-212)||(38834-38979)
[»] scaffold0040 (1 HSPs)
scaffold0040 (66-212)||(26848-26999)
[»] scaffold0167 (1 HSPs)
scaffold0167 (66-212)||(10223-10374)
[»] scaffold0320 (1 HSPs)
scaffold0320 (66-212)||(6410-6561)
[»] scaffold0039 (3 HSPs)
scaffold0039 (72-162)||(33242-33334)
scaffold0039 (83-162)||(48278-48359)
scaffold0039 (72-212)||(51576-51714)
[»] scaffold1024 (1 HSPs)
scaffold1024 (83-221)||(2883-3025)
[»] scaffold0016 (1 HSPs)
scaffold0016 (167-212)||(13060-13105)
[»] scaffold1102 (1 HSPs)
scaffold1102 (164-212)||(858-906)


Alignment Details
Target: chr7 (Bit Score: 96; Significance: 3e-47; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 60 - 221
Target Start/End: Original strand, 12468936 - 12469103
Alignment:
Q  60 aaagtgaattgtattgcattgaagtaaatgtggttcgacaaatcagattacatacat----tttgtgactcttttctctagacgctgatacttcgagtgc 155  Q
    ||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||    | ||||||| ||||||||||||||||| |||| ||||||    
T  12468936 aaagtaaattgcattgcattaaagtaaatgtggttcgacaaatcagattacatacataaattctgtgacttttttctctagacgctgacactttgagtgc 12469035  T
Q  156 tagaattgta--agtgatttgcgaccctttttccttatgaaaaactactatatatacatggagaaaat 221  Q
    ||||||| ||  ||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||    
T  12469036 tagaattctataagtgatttgcgacccattttccttatgaaaaactactatatgtacatagagaaaat 12469103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 66 - 221
Target Start/End: Complemental strand, 1545712 - 1545554
Alignment:
Q  66 aattgtattgcattgaagtaaatgtggttcgacaaatcagattacatacattttg--tgactcttttctctagacgctgatacttcgagtgctagaat-- 161  Q
    ||||| |||||||| | ||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||| | || |||||| |||||| ||||      
T  1545712 aattgcattgcattaatgtaaatgtggttcgacaaatcagattatatacattttgtatgactcttttctctagatgttggtacttcaagtgctcgaattc 1545613  T
Q  162 tgtaagtgatttgcgaccctttttccttatgaaaaactactatatatacatggagaaaat 221  Q
    | |||||||||||||||||||| |||| ||||||||||||||| ||||||| ||||||||    
T  1545612 tataagtgatttgcgaccctttatcctaatgaaaaactactat-tatacatagagaaaat 1545554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 66 - 212
Target Start/End: Complemental strand, 7948102 - 7947955
Alignment:
Q  66 aattgtattgcattgaagtaaatgtggttcgacaaatcagattacatacattttgtgactcttttctctagacgctgatacttcgagtgctagaat--tg 163  Q
    ||||| |||||||| | |||||| ||||| ||||||||||||||||||||||||||||||||||| ||| ||| ||| ||||||| ||||||||||  |     
T  7948102 aattgcattgcattaatgtaaatatggtttgacaaatcagattacatacattttgtgactcttttatctggacactggtacttcgggtgctagaattcta 7948003  T
Q  164 taagtgatttgcgaccctttttccttatgaaaaactactatatatacat 212  Q
    |||||||||||| ||||||||| |||||||||||||| |||||||||||    
T  7948002 taagtgatttgcaacccttttt-cttatgaaaaactattatatatacat 7947955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 66 - 204
Target Start/End: Complemental strand, 25621190 - 25621050
Alignment:
Q  66 aattgtattgcattgaagtaaatgtggttcgacaaatcagattacatacattttgtgactcttttctctagacgctgatacttcgagtgctagaa--ttg 163  Q
    |||||||||||||| | ||||| |||||||||||||| |||||||||||||| | |||||||||||||||||||| | |||||||||||||||||  ||     
T  25621190 aattgtattgcattaatgtaaaggtggttcgacaaattagattacatacattctatgactcttttctctagacgccggtacttcgagtgctagaatttta 25621091  T
Q  164 taagtgatttgcgaccctttttccttatgaaaaactactat 204  Q
    ||||||||||||||||  |||| | ||||||||||||||||    
T  25621090 taagtgatttgcgacctatttttcatatgaaaaactactat 25621050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 72 - 212
Target Start/End: Complemental strand, 7524824 - 7524680
Alignment:
Q  72 attgcattgaagtaaatgtggttcgacaaatcagattacatacattttg--tgactcttttctctagacgctgatacttcgagtgctagaat--tgtaag 167  Q
    |||||||| | ||||| ||||||||||||||||||||||||| ||| ||  ||||||||||||| | |||||| |||||  ||||||| |||  | ||||    
T  7524824 attgcattaatgtaaaggtggttcgacaaatcagattacataaattatgtatgactcttttctcgatacgctggtacttgaagtgctataattctataag 7524725  T
Q  168 tgatttgcgaccctttttccttatgaaaaactactatatatacat 212  Q
    ||||||| ||||  |||||| |||||||||||||||| |||||||    
T  7524724 tgatttgtgacctattttccatatgaaaaactactatttatacat 7524680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 89 - 156
Target Start/End: Original strand, 41131966 - 41132035
Alignment:
Q  89 gtggttcgacaaatcagattacatacattttg--tgactcttttctctagacgctgatacttcgagtgct 156  Q
    ||||||||||||||||||||||||||||||||  |||||||||||| |||||| ||||||||||||||||    
T  41131966 gtggttcgacaaatcagattacatacattttgtatgactcttttctatagacgttgatacttcgagtgct 41132035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 90 - 212
Target Start/End: Complemental strand, 11993975 - 11993851
Alignment:
Q  90 tggttcgacaaatcagattacatacattttgtgactcttttctctagacgctgatacttcgagtgctagaa--ttgtaagtgatttgcgaccctttttcc 187  Q
    ||||| |||||||||  ||||||||||| |||||||||||||||||||||| | ||||||||| |||||||  || ||| ||||||||||||  ||||      
T  11993975 tggtttgacaaatcaagttacatacattatgtgactcttttctctagacgccggtacttcgagcgctagaattttataaatgatttgcgacctctttttt 11993876  T
Q  188 ttatgaaaaactactatatatacat 212  Q
    | ||||||||||| ||| |||||||    
T  11993875 tcatgaaaaactattatttatacat 11993851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 90 - 201
Target Start/End: Complemental strand, 4978893 - 4978777
Alignment:
Q  90 tggttcgacaaatcagattacatacattttgt--gactcttttctctagacgctgatacttcgagtgctagaat---tgtaagtgatttgcgaccctttt 184  Q
    ||||||||||||||||||||||| |||| |||  ||||||||| ||||||||| | ||||||||||||||||||   | ||||| ||||||||||  |||    
T  4978893 tggttcgacaaatcagattacatgcattatgtatgactcttttatctagacgccggtacttcgagtgctagaatttctataagtaatttgcgacctattt 4978794  T
Q  185 tccttatgaaaaactac 201  Q
    | | |||||||||||||    
T  4978793 ttcatatgaaaaactac 4978777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 66 - 156
Target Start/End: Complemental strand, 9022628 - 9022536
Alignment:
Q  66 aattgtattgcattgaagtaaatgtggttcgacaaatcagattacatacattttg--tgactcttttctctagacgctgatacttcgagtgct 156  Q
    |||| ||||||||| || |||| ||||||||| ||||||||||||||||||| ||  ||||||||| |||||||||  | |||||||||||||    
T  9022628 aattttattgcattaaaataaaggtggttcgagaaatcagattacatacattctgtatgactctttactctagacgtcggtacttcgagtgct 9022536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 66 - 212
Target Start/End: Original strand, 15682861 - 15683009
Alignment:
Q  66 aattgtattgcattgaagtaaatgtggttcgacaaatcagattacatacattttgtgactcttttctctagacgctgatacttcgagtgctagaat--tg 163  Q
    ||||| |||||||| | ||||| |||||| ||||||||||||| |||| ||| | ||||| ||||||||| || | ||||||| |  |  ||||||  |     
T  15682861 aattgcattgcattaatgtaaaagtggttagacaaatcagattgcatatattatatgactattttctctaaacacagatactttgcatattagaattata 15682960  T
Q  164 taagtgatttgcgaccctttttccttatgaaaaactactatatatacat 212  Q
    ||||||||||| ||||| |||| ||||  ||||||||||||||||||||    
T  15682961 taagtgatttgtgacccatttttcttaacaaaaactactatatatacat 15683009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 7948150 - 7948110
Alignment:
Q  1 caagtaaaagacttaaaagtttaaacacagaaacttaaaga 41  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  7948150 caagtaaaagacttaaaagtttaaacgcagaaacttaaaga 7948110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 1545760 - 1545720
Alignment:
Q  1 caagtaaaagacttaaaagtttaaacacagaaacttaaaga 41  Q
    |||||||||||||||||||||||||| |||||| |||||||    
T  1545760 caagtaaaagacttaaaagtttaaacgcagaaaattaaaga 1545720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 14628747 - 14628699
Alignment:
Q  164 taagtgatttgcgaccctttttccttatgaaaaactactatatatacat 212  Q
    ||||||||||| ||||||||||   ||||||||||||||||||||||||    
T  14628747 taagtgatttgtgaccctttttttctatgaaaaactactatatatacat 14628699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 41
Target Start/End: Complemental strand, 11994053 - 11994019
Alignment:
Q  7 aaagacttaaaagtttaaacacagaaacttaaaga 41  Q
    |||||||||||||||||||| ||||||||||||||    
T  11994053 aaagacttaaaagtttaaacgcagaaacttaaaga 11994019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 5531819 - 5531770
Alignment:
Q  72 attgcattgaagtaaatgtggttcgacaaatcagattacatacattttgt 121  Q
    |||||||| | ||||| |||||| |||||| |||||||||||||||||||    
T  5531819 attgcattaatgtaaaggtggttagacaaaccagattacatacattttgt 5531770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 212
Target Start/End: Original strand, 17600722 - 17600767
Alignment:
Q  167 gtgatttgcgaccctttttccttatgaaaaactactatatatacat 212  Q
    |||||||||||| | ||||||||||| ||||||||||| |||||||    
T  17600722 gtgatttgcgacacgttttccttatggaaaactactatttatacat 17600767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 212
Target Start/End: Original strand, 20146003 - 20146048
Alignment:
Q  167 gtgatttgcgaccctttttccttatgaaaaactactatatatacat 212  Q
    |||||||||||||| |||| | |||||||||||||||| |||||||    
T  20146003 gtgatttgcgacccgttttacctatgaaaaactactatttatacat 20146048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 7e-39; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 66 - 221
Target Start/End: Original strand, 32352199 - 32352358
Alignment:
Q  66 aattgtattgcattgaagtaaatgtggttcgacaaatcagattacatacattttgt--gactcttttctctagacgctgatacttcgagtgctagaattg 163  Q
    ||||||||| |||| | ||||| |||||||||||||||| ||||||||||||||||  ||||||||||||| || |||| |||||||||||||| ||||     
T  32352199 aattgtattacattaatgtaaaagtggttcgacaaatcatattacatacattttgtatgactcttttctctggaagctggtacttcgagtgctataattc 32352298  T
Q  164 ta--agtgatttgcgaccctttttccttatgaaaaactactatatatacatggagaaaat 221  Q
    ||  ||||||||||||||| |||| ||||||||||||||||||||||||||  |||||||    
T  32352299 tataagtgatttgcgacccgtttttcttatgaaaaactactatatatacatatagaaaat 32352358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 66 - 221
Target Start/End: Original strand, 32368860 - 32369019
Alignment:
Q  66 aattgtattgcattgaagtaaatgtggttcgacaaatcagattacatacattttgt--gactcttttctctagacgctgatacttcgagtgctagaattg 163  Q
    ||||||||| |||| | ||||| |||||||||||||||| ||||||||||||||||  ||||||||||||| || |||| |||||||||||||| ||||     
T  32368860 aattgtattacattaatgtaaaagtggttcgacaaatcatattacatacattttgtatgactcttttctctggaagctggtacttcgagtgctataattc 32368959  T
Q  164 ta--agtgatttgcgaccctttttccttatgaaaaactactatatatacatggagaaaat 221  Q
    ||  ||||||||||||||| |||| ||||||||||||||||||||||||||  |||||||    
T  32368960 tataagtgatttgcgacccgtttttcttatgaaaaactactatatatacatatagaaaat 32369019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 66 - 221
Target Start/End: Original strand, 5892613 - 5892771
Alignment:
Q  66 aattgtattgcattgaagtaaatgtggttcgacaaatcagattacatacatttt-gtgactcttttctctagacgctgatacttcgagtgctagaat--t 162  Q
    ||||| |||||||| | ||||||||||| | |||||||| |||||||||||||| ||||||||||||| |||||| || ||||||||||||||||||  |    
T  5892613 aattgcattgcattaatgtaaatgtggtacaacaaatcaaattacatacattttggtgactcttttctttagacgttggtacttcgagtgctagaattct 5892712  T
Q  163 gtaagtgatttgcgaccctttttccttatgaaaaactactatatatacatggagaaaat 221  Q
     ||| ||||||| ||||| |||| | |||||||||||||||||||||||| | ||||||    
T  5892713 ataaatgatttgtgacccgtttttcatatgaaaaactactatatatacatagtgaaaat 5892771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 66 - 185
Target Start/End: Complemental strand, 22450111 - 22449988
Alignment:
Q  66 aattgtattgcattgaagtaaatgtggttcgacaaatcagattacatacattttg--tgactcttttctctagacgctgatacttcgagtgctagaat-- 161  Q
    ||||| |||||||| | || |||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||| ||||||||||||||||||      
T  22450111 aattgcattgcattaatgttaatgtggttcgacaaatcagattacatacattttgtatgactcttttctctggacgctggtacttcgagtgctagaattc 22450012  T
Q  162 tgtaagtgatttgcgacccttttt 185  Q
    | |||||||||||||||| |||||    
T  22450011 tataagtgatttgcgacctttttt 22449988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 66 - 209
Target Start/End: Complemental strand, 28291650 - 28291502
Alignment:
Q  66 aattgtattgcattgaagtaaatgtggttcgacaaatcagattacatacattttgt--gactcttttctctagacgctgatacttcgagtgctagaat-- 161  Q
    ||||| |||||||| | ||||| || |||||||||||||||||||| ||||| | |  |||||||||||||||| | || ||||||||||||||||||      
T  28291650 aattgcattgcattaatgtaaaggttgttcgacaaatcagattacacacattctatatgactcttttctctagatgatggtacttcgagtgctagaattc 28291551  T
Q  162 tgtaagtgatttgcgacc-ctttttccttatgaaaaactactatatata 209  Q
    | ||||||||||||||||  ||||| | ||||||||| |||||||||||    
T  28291550 tataagtgatttgcgaccatttttttcgtatgaaaaattactatatata 28291502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 83 - 212
Target Start/End: Complemental strand, 41652074 - 41651940
Alignment:
Q  83 gtaaatgtggttcgacaaatcagattacatacattttgt--gactcttttctctagacgctgatacttcgagtgctagaat--tgtaagtgatttgcgac 178  Q
    ||||| |||||||||||||||| |||||||||||| |||  ||||||||||||||||| ||| ||||||||||||||||||  | ||| |||||| ||||    
T  41652074 gtaaaggtggttcgacaaatcaaattacatacattctgtatgactcttttctctagacactggtacttcgagtgctagaattctataaatgatttccgac 41651975  T
Q  179 cct-ttttccttatgaaaaactactatatatacat 212  Q
    ||| |||| | |||||||||||  ||| |||||||    
T  41651974 cctgtttttcctatgaaaaactcttatttatacat 41651940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 83 - 210
Target Start/End: Complemental strand, 15340984 - 15340853
Alignment:
Q  83 gtaaatgtggttcgacaaatcagattacatacattttgt--gactcttttctctagacgctgatacttcgagtgctagaat--tgtaagtgatttgcgac 178  Q
    ||||| |||||| |||||||||| ||||||||||| |||  ||||||||||||||||||||  ||||| ||||||||||||  | ||| |||||||||||    
T  15340984 gtaaaggtggtttgacaaatcagtttacatacattctgtatgactcttttctctagacgctagtactttgagtgctagaattctataaatgatttgcgac 15340885  T
Q  179 cctttttccttatgaaaaactactatatatac 210  Q
    |  |||| | |||||||||||| ||| |||||    
T  15340884 caatttttcatatgaaaaactattatttatac 15340853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 83 - 210
Target Start/End: Complemental strand, 15430049 - 15429918
Alignment:
Q  83 gtaaatgtggttcgacaaatcagattacatacattttgt--gactcttttctctagacgctgatacttcgagtgctagaat--tgtaagtgatttgcgac 178  Q
    ||||| |||||| |||||||||| ||||||||||| |||  ||||||||||||||||||||  ||||| ||||||||||||  | ||| |||||||||||    
T  15430049 gtaaaggtggtttgacaaatcagtttacatacattctgtatgactcttttctctagacgctagtactttgagtgctagaattctataaatgatttgcgac 15429950  T
Q  179 cctttttccttatgaaaaactactatatatac 210  Q
    |  |||| | |||||||||||| ||| |||||    
T  15429949 caatttttcatatgaaaaactattatttatac 15429918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 83 - 210
Target Start/End: Complemental strand, 15521353 - 15521222
Alignment:
Q  83 gtaaatgtggttcgacaaatcagattacatacattttgt--gactcttttctctagacgctgatacttcgagtgctagaat--tgtaagtgatttgcgac 178  Q
    ||||| |||||| |||||||||| ||||||||||| |||  ||||||||||||||||||||  ||||| ||||||||||||  | ||| |||||||||||    
T  15521353 gtaaaggtggtttgacaaatcagtttacatacattctgtatgactcttttctctagacgctagtactttgagtgctagaattctataaatgatttgcgac 15521254  T
Q  179 cctttttccttatgaaaaactactatatatac 210  Q
    |  |||| | |||||||||||| ||| |||||    
T  15521253 caatttttcatatgaaaaactattatttatac 15521222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 136 - 212
Target Start/End: Complemental strand, 22454725 - 22454647
Alignment:
Q  136 gacgctgatacttcgagtgctagaattgta--agtgatttgcgaccctttttccttatgaaaaactactatatatacat 212  Q
    ||||||| ||||| ||||||||||||| ||  ||||||||||||||| |||| ||||||||||||||||||||||||||    
T  22454725 gacgctggtactttgagtgctagaattctataagtgatttgcgacccatttttcttatgaaaaactactatatatacat 22454647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 66 - 162
Target Start/End: Original strand, 23355469 - 23355567
Alignment:
Q  66 aattgtattgcattgaagtaaatgtggttcgacaaatcagattacatacattttg--tgactcttttctctagacgctgatacttcgagtgctagaatt 162  Q
    ||||| |||||||| | ||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||| |  | ||||| ||| |||||||||    
T  23355469 aattgcattgcattaatgtaaaggtggttcgacaaatcagattacatacattttgtatgactcttttctctagatgtcggtactttgagggctagaatt 23355567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 162
Target Start/End: Original strand, 6017577 - 6017657
Alignment:
Q  83 gtaaatgtggttcgacaaatcagattacatacattttg--tgactcttttctctagacgctgatacttcgagtgctagaatt 162  Q
    |||||||| |||||||||||||| ||||||||||| ||  |||||| ||||||||||||| | |||||||||||||||||||    
T  6017577 gtaaatgtagttcgacaaatcagtttacatacattatgtatgactc-tttctctagacgcaggtacttcgagtgctagaatt 6017657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 66 - 212
Target Start/End: Complemental strand, 19709580 - 19709429
Alignment:
Q  66 aattgtattgcattgaagtaaatgtggttcgacaaatcagattacatacat--tttgtgactcttttctctagacgctgatacttcgagtgctagaat-- 161  Q
    ||||| |||||||| | |||||||||||||||||||||| |||||||||||  | | |||||||||||||  ||||  | |||||  |||||||||||      
T  19709580 aattgcattgcattaatgtaaatgtggttcgacaaatcaaattacatacattatctatgactcttttctccggacgacggtactttaagtgctagaattc 19709481  T
Q  162 tgtaagtgatttgcgacc-ctttttccttatgaaaaactactatatatacat 212  Q
    | |||||||||||| |||  ||||| | ||||||||||||| || |||||||    
T  19709480 tataagtgatttgccacctattttttcatatgaaaaactaccatttatacat 19709429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 198
Target Start/End: Complemental strand, 28862553 - 28862416
Alignment:
Q  66 aattgtattgcattgaagt-aaatgtggttcgacaaatcagattacatacattttgtgactcttttctctagacgctgatacttcgagtgctagaattgt 164  Q
    ||||| ||||||||||| | ||| |||||| ||||||| |  || || ||||| ||||||||||||||||| |||| ||||||| ||||||||||||| |    
T  28862553 aattgcattgcattgaattcaaaggtggtttgacaaattaagttgcacacattctgtgactcttttctctaaacgcagatactttgagtgctagaattct 28862454  T
Q  165 a----agtgatttgcgaccctttttccttatgaaaaac 198  Q
    |    | ||||||| ||||| |||| ||||||||||||    
T  28862453 ataataatgatttgtgacccatttttcttatgaaaaac 28862416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 156
Target Start/End: Original strand, 11030674 - 11030766
Alignment:
Q  66 aattgtattgcattgaagtaaatgtggttcgacaaatcagattacatacat--tttgtgactcttttctctagacgctgatacttcgagtgct 156  Q
    ||||| |||||||| |||| || ||||||||| ||||||||||||||||||  | | |||||||||||||||||||  | | |||||||||||    
T  11030674 aattgcattgcattaaagttaaggtggttcgataaatcagattacatacattctatatgactcttttctctagacgtcggtgcttcgagtgct 11030766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 117
Target Start/End: Complemental strand, 27123719 - 27123668
Alignment:
Q  66 aattgtattgcattgaagtaaatgtggttcgacaaatcagattacatacatt 117  Q
    ||||| |||||||| || |||| ||||||||| |||||||||||||||||||    
T  27123719 aattgcattgcattaaaataaaggtggttcgataaatcagattacatacatt 27123668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 10600272 - 10600223
Alignment:
Q  66 aattgtattgcattgaagtaaatgtggttcgacaaatcagattacataca 115  Q
    ||||| |||||||| ||||||| || | ||||||||||||||||||||||    
T  10600272 aattgcattgcattaaagtaaaggtagatcgacaaatcagattacataca 10600223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 212
Target Start/End: Original strand, 28371225 - 28371270
Alignment:
Q  167 gtgatttgcgaccctttttccttatgaaaaactactatatatacat 212  Q
    |||||||||||||| |||||| |||| ||||||||||| |||||||    
T  28371225 gtgatttgcgacccattttccctatggaaaactactatttatacat 28371270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 204
Target Start/End: Complemental strand, 18672138 - 18672098
Alignment:
Q  164 taagtgatttgcgaccctttttccttatgaaaaactactat 204  Q
    |||||||||||||| |  |||||||||||||||||||||||    
T  18672138 taagtgatttgcgaactattttccttatgaaaaactactat 18672098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 28291698 - 28291658
Alignment:
Q  1 caagtaaaagacttaaaagtttaaacacagaaacttaaaga 41  Q
    |||||||||||||||||||||||||| || ||| |||||||    
T  28291698 caagtaaaagacttaaaagtttaaacgcaaaaatttaaaga 28291658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 30913054 - 30913010
Alignment:
Q  168 tgatttgcgaccctttttccttatgaaaaactactatatatacat 212  Q
    ||||||||||||| |||| | |||||||||||| |||||||||||    
T  30913054 tgatttgcgacccctttttcctatgaaaaactaatatatatacat 30913010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 7e-39; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 66 - 209
Target Start/End: Original strand, 17352718 - 17352865
Alignment:
Q  66 aattgtattgcattgaagtaaatgtggttcgacaaatcagattacatacattttgt--gactcttttctctagacgctgatacttcgagtgctagaattg 163  Q
    ||||| |||||||| | |||||||||||||||||||||||||||||  |||| |||  ||||||||||||||||||||| ||||| |||||||||||||     
T  17352718 aattgcattgcattaatgtaaatgtggttcgacaaatcagattacaagcattatgtatgactcttttctctagacgctggtactttgagtgctagaattc 17352817  T
Q  164 ta--agtgatttgcgaccctttttccttatgaaaaactactatatata 209  Q
    ||  ||||||||||||||||||||||||| | ||||||||||||||||    
T  17352818 tataagtgatttgcgaccctttttccttagggaaaactactatatata 17352865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 72 - 200
Target Start/End: Original strand, 28712397 - 28712529
Alignment:
Q  72 attgcattgaagtaaatgtggttcgacaaatcagattacatacattttgt--gactcttttctctagacgctgatacttcgagtgctagaat--tgtaag 167  Q
    |||||||| | ||||| ||||||||||||||||||||||||||||| | |  ||||||||||||||||||||||||||||||||||||||||  | ||||    
T  28712397 attgcattaatgtaaaggtggttcgacaaatcagattacatacattatatatgactcttttctctagacgctgatacttcgagtgctagaattctataag 28712496  T
Q  168 tgatttgcgaccctttttccttatgaaaaacta 200  Q
    |||||||||||   |||| ||||||||||||||    
T  28712497 tgatttgcgacatgtttttcttatgaaaaacta 28712529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 242099 - 241975
Alignment:
Q  89 gtggttcgacaaatcagattacatacattttgt--gactcttttctctagacgctgatacttcgagtgctagaat--tgtaagtgatttgcgaccctttt 184  Q
    |||||| |||| ||||||||||||||||| |||  ||||||||||||||||||||| ||||||||||||||||||  | ||||||||||||||||  |||    
T  242099 gtggtttgacacatcagattacatacattatgtatgactcttttctctagacgctggtacttcgagtgctagaattctataagtgatttgcgacctattt 242000  T
Q  185 tccttatgaaaaactactatatata 209  Q
    | | |||||||||||||||| ||||    
T  241999 ttcatatgaaaaactactatttata 241975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 66 - 212
Target Start/End: Original strand, 16793298 - 16793450
Alignment:
Q  66 aattgtattgcattgaagtaaatgtggttcgacaaatcagattacatacattttg--tgactcttttctctagacgctgatacttcgagtgc-tagaat- 161  Q
    ||||| |||||||| || ||||  ||||||||||||||||||||||||||| |||  |||||||||||||||||| | |||||||||||||| ||||||     
T  16793298 aattgcattgcattaaaataaaaatggttcgacaaatcagattacatacatattgtatgactcttttctctagacaccgatacttcgagtgcttagaatt 16793397  T
Q  162 --tgtaagtgatttgcgaccctttttccttatgaaaaactactatatatacat 212  Q
      | |||||||||||||||   |||||| |||| ||||||||||| |||||||    
T  16793398 tctttaagtgatttgcgacttattttccatatggaaaactactatttatacat 16793450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 83 - 212
Target Start/End: Complemental strand, 24154230 - 24154097
Alignment:
Q  83 gtaaatgtggttcgacaaatcagattacatacattttg--tgactcttttctctagacgctgatacttcgagtgctagaattgt--aagtgatttgcgac 178  Q
    ||||| ||||||||||||||||| ||||||||||||||  |||||||||||| ||||||  | ||||||||||||||||||| |  || |||||||||||    
T  24154230 gtaaaggtggttcgacaaatcagtttacatacattttgtatgactcttttctttagacgtcggtacttcgagtgctagaattctacaaatgatttgcgac 24154131  T
Q  179 cctttttccttatgaaaaactactatatatacat 212  Q
    |  |||| | ||| |||||||| ||| |||||||    
T  24154130 ctgtttttcctataaaaaactattatttatacat 24154097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 60 - 212
Target Start/End: Complemental strand, 19723968 - 19723812
Alignment:
Q  60 aaagtgaattgtattgcattgaagtaaatgtggttcgacaaatcagattacatacattttgt--gactcttttctctagacgctgatacttcgagtgcta 157  Q
    ||||| ||||| |||||||| | ||||| || ||||  |||||||||||||||||||| |||  ||||||||||||||||||| | | ||||||||||||    
T  19723968 aaagtaaattgcattgcattaatgtaaaggtagttcatcaaatcagattacatacattatgtatgactcttttctctagacgccggttcttcgagtgcta 19723869  T
Q  158 gaat--tgtaagtgatttgcgaccctttttccttatgaaaaactactatatatacat 212  Q
    ||||  | |||   ||||||||||| |||||| |||| ||||||||||  |||||||    
T  19723868 gaattctataaacaatttgcgacccattttccatatggaaaactactaattatacat 19723812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 72 - 212
Target Start/End: Original strand, 16142870 - 16143016
Alignment:
Q  72 attgcattgaagtaaatgtggttcgacaaatcagattacatacattttgt--gactcttttctctagacgctgatacttcgagtgct-agaattg---ta 165  Q
    |||||||| | ||||| ||||||||||||  ||||||||||||||| |||  |||||||||||||| ||||   ||||||||||||| ||||||    ||    
T  16142870 attgcattaatgtaaaggtggttcgacaatgcagattacatacattctgtatgactcttttctctaaacgccagtacttcgagtgcttagaatttatata 16142969  T
Q  166 agtgatttgcgaccctttttccttatgaaaaactactatatatacat 212  Q
    | ||||||||||||| |||||| |||| ||||||||||| |||||||    
T  16142970 aatgatttgcgacccattttccatatggaaaactactatttatacat 16143016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 91 - 197
Target Start/End: Complemental strand, 10163317 - 10163208
Alignment:
Q  91 ggttcgacaaatcagattacatacattttgt--gactcttttctctagacgctgatacttcgagtgctagaat--tgtaagtgatttgcgaccctttttc 186  Q
    ||||||||||||||| ||||||||||| | |  ||||||||||||||||||||| ||||| ||||||||||||  | ||| |||||||||||| ||||||    
T  10163317 ggttcgacaaatcagtttacatacattctatatgactcttttctctagacgctggtactttgagtgctagaattctataaatgatttgcgaccgtttttc 10163218  T
Q  187 cttatgaaaaa 197  Q
    | |||||||||    
T  10163217 c-tatgaaaaa 10163208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 83 - 221
Target Start/End: Complemental strand, 13002907 - 13002765
Alignment:
Q  83 gtaaatgtggttcgacaaatcagattacatacattttgt--gactcttttctctagacgctgatacttcgagtgctagaat--tgtaagtgatttgcgac 178  Q
    ||||| ||||||||||||||||| ||||||||||| |||  ||||||||||||||||||  | ||||||||||||||||||  | ||| |||||||| |     
T  13002907 gtaaaggtggttcgacaaatcagtttacatacattctgtatgactcttttctctagacgtcggtacttcgagtgctagaattctataaatgatttgctat 13002808  T
Q  179 cctttttccttatgaaaaactactatatatacatggagaaaat 221  Q
     | |||| | |||||||||||| ||| ||||||| | ||||||    
T  13002807 tcgtttttcctatgaaaaactattatttatacatagtgaaaat 13002765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 90 - 212
Target Start/End: Original strand, 34992415 - 34992539
Alignment:
Q  90 tggttcgacaaatcagattacatacattttgtgactcttttctctagacgctgatacttcgagtgctagaa--ttgtaagtgatttgcgaccctttttcc 187  Q
    |||||||||||||||  ||||||||||| |||||||||||||||||||||  | ||||||||||| |||||  || ||| |||||| |||||  ||||      
T  34992415 tggttcgacaaatcaagttacatacattatgtgactcttttctctagacgtcggtacttcgagtgatagaattttataaatgatttacgacctctttttt 34992514  T
Q  188 ttatgaaaaactactatatatacat 212  Q
    | ||||||||||| ||| |||||||    
T  34992515 tcatgaaaaactattatttatacat 34992539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 72 - 212
Target Start/End: Original strand, 16142566 - 16142712
Alignment:
Q  72 attgcattgaagtaaatgtggttcgacaaatcagattacatacattttgt--gactcttttctctagacgctgatacttcgagtgct-agaattg---ta 165  Q
    |||||||| | ||||| ||||||||||||  ||||||||||||||| | |  |||||||||| ||| | || | ||||||||||||| ||||||    ||    
T  16142566 attgcattaatgtaaaggtggttcgacaatgcagattacatacattctatatgactcttttccctaaatgccggtacttcgagtgcttagaatttctata 16142665  T
Q  166 agtgatttgcgaccctttttccttatgaaaaactactatatatacat 212  Q
    | ||||||||||||| |||||| |||| ||||||||||| |||||||    
T  16142666 aatgatttgcgacccattttccatatggaaaactactatttatacat 16142712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 83 - 212
Target Start/End: Original strand, 16143187 - 16143321
Alignment:
Q  83 gtaaatgtggttcgacaaatcagattacatacattttgtg--actcttttctctagacgctgatacttcgagtgc-tagaat---tgtaagtgatttgcg 176  Q
    ||||| ||||||||||||||||||||||||||||| | |   |||||||||||||||||| | |||| || |||| ||||||   | ||| |||||||||    
T  16143187 gtaaaggtggttcgacaaatcagattacatacattctatataactcttttctctagacgccggtactacgggtgcttagaatttctataattgatttgcg 16143286  T
Q  177 accctttttccttatgaaaaactactatatatacat 212  Q
    |||  |||||| ||||  |||||||||| |||||||    
T  16143287 accgattttccatatg-gaaactactatttatacat 16143321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 60 - 211
Target Start/End: Complemental strand, 22259334 - 22259178
Alignment:
Q  60 aaagtgaattgtattgcattgaagtaaatg-tggttcgacaaatcagattacatacattttgtgactcttttctctagacgctgatacttcgagtgctag 158  Q
    ||||||||||| |||||| ||||||||| | ||||||  |||||||  ||||||||||| | | ||| |||||||| ||||||| ||||| ||||| | |    
T  22259334 aaagtgaattgcattgcaatgaagtaaaagatggttcaccaaatcaagttacatacattctattacttttttctctggacgctggtactttgagtgtttg 22259235  T
Q  159 aat--tgtaa--gtgatttgcgaccctttttccttatgaaaaactactatatataca 211  Q
    |||  |||||  | |||||| || || |||| | ||||||||||||| |||||||||    
T  22259234 aattctgtaactgagatttgtgatccatttttcatatgaaaaactacaatatataca 22259178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 11744583 - 11744658
Alignment:
Q  89 gtggttcgacaaatcagattacatacattttgt--gactcttttctctagacgctgatacttcgagtgctagaatt 162  Q
    ||||||| ||||||||| ||| ||| ||| |||  ||||||||||||| ||||||| |||||||||||||| ||||    
T  11744583 gtggttcaacaaatcagtttatatagattctgtatgactcttttctctggacgctggtacttcgagtgctaaaatt 11744658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 211
Target Start/End: Complemental strand, 6470150 - 6470107
Alignment:
Q  168 tgatttgcgaccctttttccttatgaaaaactactatatataca 211  Q
    ||||||| |||||||||| | |||||||||||||||||||||||    
T  6470150 tgatttgtgacccttttttcctatgaaaaactactatatataca 6470107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 176
Target Start/End: Complemental strand, 4031122 - 4031008
Alignment:
Q  66 aattgtattgcattgaagtaaatgtggttcgacaaatcagattacatacattttgt--gactcttttctctagacgctgatacttcgagtgctagaa--t 161  Q
    ||||| |||||||| | ||||| ||||||| ||||| | |||||| |||||| |||  |||| ||||||||| | |  ||||||||||||| |||||  |    
T  4031122 aattgcattgcattaatgtaaaggtggttcaacaaacctgattacttacattctgtatgactgttttctctaaatgtcgatacttcgagtgttagaattt 4031023  T
Q  162 tgtaagtgatttgcg 176  Q
    | |||||||||||||    
T  4031022 tataagtgatttgcg 4031008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 7e-39; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 107 - 221
Target Start/End: Original strand, 16647112 - 16647228
Alignment:
Q  107 ttacatacattttgtgactcttttctctagacgctgatacttcgagtgctagaattgta--agtgatttgcgaccctttttccttatgaaaaactactat 204  Q
    |||||||||||||||||||||||||||||||||| | ||||| ||||||||||||| ||  |||||||||||||||||||| ||||||||||||||||||    
T  16647112 ttacatacattttgtgactcttttctctagacgcgggtactttgagtgctagaattctataagtgatttgcgacccttttttcttatgaaaaactactat 16647211  T
Q  205 atatacatggagaaaat 221  Q
    |||||||| ||||||||    
T  16647212 atatacatagagaaaat 16647228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 67 - 221
Target Start/End: Original strand, 24924889 - 24925047
Alignment:
Q  67 attgtattgcattgaagtaaatgtggttcgacaaatcagattacatacattttg--tgactcttttctctagacgctgatacttcgagtgctagaat--t 162  Q
    |||| |||||||| | ||||| ||||||||||||||||||||||||||||| ||  ||||||||||||||| |||| | ||||||||||||||||||  |    
T  24924889 attgcattgcattaatgtaaaggtggttcgacaaatcagattacatacattatgtatgactcttttctctaaacgccggtacttcgagtgctagaattct 24924988  T
Q  163 gtaagtgatttgcgaccctttttccttatgaaaaactactatatatacatggagaaaat 221  Q
     |||||||||||||| ||||||| |  |||||||||||||||||||||||  |||||||    
T  24924989 ataagtgatttgcgaaccttttttcaaatgaaaaactactatatatacatatagaaaat 24925047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 83 - 212
Target Start/End: Original strand, 12424797 - 12424928
Alignment:
Q  83 gtaaatgtggttcgacaaatcagattacatacattttgt--gactcttttctctagacgctgatacttcgagtgctagaattgtaagtgatttgcgaccc 180  Q
    ||||| ||||||||||||||  | |||||||||||||||  ||||||||||||||||||| ||||||||||||| ||||||| ||  |||||||||||||    
T  12424797 gtaaaggtggttcgacaaattggtttacatacattttgtatgactcttttctctagacgccgatacttcgagtgttagaattctatatgatttgcgaccc 12424896  T
Q  181 tttttccttatgaaaaactactatatatacat 212  Q
     |||| | |||||||||||| ||| |||||||    
T  12424897 gtttttcctatgaaaaactattatttatacat 12424928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 83 - 195
Target Start/End: Original strand, 16288778 - 16288894
Alignment:
Q  83 gtaaatgtggttcgacaaatcagattacatacattttg--tgactcttttctctagacgctgatacttcgagtgctagaattgt--aagtgatttgcgac 178  Q
    ||||| ||||||| ||||||||||||||||||||||||  | ||||||||||||| || ||| ||||||||||||||||||| |  |||||||||| |||    
T  16288778 gtaaaggtggttcaacaaatcagattacatacattttgtataactcttttctctaaacactggtacttcgagtgctagaattctaaaagtgatttgtgac 16288877  T
Q  179 cctttttccttatgaaa 195  Q
    | |||||||| ||||||    
T  16288878 catttttcctaatgaaa 16288894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 66 - 221
Target Start/End: Complemental strand, 26654214 - 26654055
Alignment:
Q  66 aattgtattgcattgaagtaaatgtggttcgacaaatcagattacatacattttg--tgactcttttctctagacgctgatacttcgagtgctagaat-- 161  Q
    ||||| |||||||| | | ||| |||||||||||||||| |||||||||||| ||  ||||||||||||||| ||   | |||||||||||||| |||      
T  26654214 aattgcattgcattaatgcaaaggtggttcgacaaatcatattacatacattatgtatgactcttttctctatacatcggtacttcgagtgctaaaattc 26654115  T
Q  162 tgtaagtgatttgcgaccctttttccttatgaaaaactactatatatacatggagaaaat 221  Q
    | |||||||||||||| |  |||| | |||||||||||||||| ||||||| | ||||||    
T  26654114 tataagtgatttgcgatctatttttcatatgaaaaactactatttatacatagtgaaaat 26654055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 66 - 121
Target Start/End: Original strand, 4697487 - 4697542
Alignment:
Q  66 aattgtattgcattgaagtaaatgtggttcgacaaatcagattacatacattttgt 121  Q
    |||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||    
T  4697487 aattgtattgcattaaagtaaaggtggttcgacgaatcagattacatacattttgt 4697542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 66 - 162
Target Start/End: Original strand, 12568149 - 12568247
Alignment:
Q  66 aattgtattgcattgaagtaaatgtggttcgacaaatcagattacatacattttgt--gactcttttctctagacgctgatacttcgagtgctagaatt 162  Q
    ||||| |||||||| | ||||| || ||| | | |||||||||||||||||| |||  |||||||||||| |||||| | |||||||||||||||||||    
T  12568149 aattgcattgcattaatgtaaaggtagtttggctaatcagattacatacattatgtatgactcttttctcgagacgccggtacttcgagtgctagaatt 12568247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 156
Target Start/End: Original strand, 41457566 - 41457618
Alignment:
Q  106 attacatacattttgt--gactcttttctctagacgctgatacttcgagtgct 156  Q
    |||||||||||| |||  |||||||||||||||||||||||||||||||||||    
T  41457566 attacatacattatgtatgactcttttctctagacgctgatacttcgagtgct 41457618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 93 - 212
Target Start/End: Complemental strand, 16928674 - 16928549
Alignment:
Q  93 ttcgacaaatcagattacatacat--tttgtgactcttttctctagacgctgatacttcgagtgc-tagaat---tgtaagtgatttgcgaccctttttc 186  Q
    ||||||||||||||||||||||||  | | |||||||||||||||||||  | ||| |||||||| ||||||   | |||| |||||||||||  |||||    
T  16928674 ttcgacaaatcagattacatacattatctatgactcttttctctagacgtcggtacctcgagtgcttagaatttctataagggatttgcgacctattttc 16928575  T
Q  187 cttatgaaaaactactatatatacat 212  Q
    | |||| ||||||| ||| |||||||    
T  16928574 catatggaaaactattatttatacat 16928549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 4697591 - 4697639
Alignment:
Q  164 taagtgatttgcgaccctttttccttatgaaaaactactatatatacat 212  Q
    ||||||||||||||| | |||||| |||| ||||||||||| |||||||    
T  4697591 taagtgatttgcgactcattttccatatggaaaactactatttatacat 4697639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 9409188 - 9409140
Alignment:
Q  164 taagtgatttgcgaccctttttccttatgaaaaactactatatatacat 212  Q
    ||||||||||||||||| ||| || |||| ||||||||||| |||||||    
T  9409188 taagtgatttgcgacccgtttcccctatggaaaactactatttatacat 9409140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 7e-39; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 73 - 212
Target Start/End: Original strand, 17676588 - 17676731
Alignment:
Q  73 ttgcattgaagtaaatgtggttcgacaaatcagattacatacattttg--tgactcttttctctagacgctgatacttcgagtgctagaat--tgtaagt 168  Q
    ||||||| | ||||| ||||||||||||||||||||||||||||||||  |||||||||||| ||||||||| ||||||||||||||||||  | |||||    
T  17676588 ttgcattaatgtaaaggtggttcgacaaatcagattacatacattttgtatgactcttttctttagacgctggtacttcgagtgctagaattctataagt 17676687  T
Q  169 gatttgcgaccctttttccttatgaaaaactactatatatacat 212  Q
    |||||| ||||| |||||| |||||||||||||||| |||||||    
T  17676688 gatttgtgacccattttccatatgaaaaactactatttatacat 17676731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 72 - 212
Target Start/End: Original strand, 32890418 - 32890562
Alignment:
Q  72 attgcattgaagtaaatgtggttcgacaaatcagattacatacattttgt--gactcttttctctagacgctgatacttcgagtgctagaa--ttgtaag 167  Q
    |||||||| | ||||| |||||| ||||||| |||||||||||||| |||  |||| |||||||||||||| | |||||||||||||||||  || ||||    
T  32890418 attgcattaatgtaaaagtggtttgacaaataagattacatacattatgtatgactattttctctagacgccggtacttcgagtgctagaattttataag 32890517  T
Q  168 tgatttgcgaccctttttccttatgaaaaactactatatatacat 212  Q
    ||||||||||||  |||||  |||| ||||||||||| |||||||    
T  32890518 tgatttgcgacctattttcgatatggaaaactactatttatacat 32890562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 73 - 162
Target Start/End: Original strand, 17636730 - 17636821
Alignment:
Q  73 ttgcattgaagtaaatgtggttcgacaaatcagattacatacattttg--tgactcttttctctagacgctgatacttcgagtgctagaatt 162  Q
    ||||||| | ||||| ||||||||||||||||||||||||||||||||  |||||||||||| ||||||||| | |||||||||||||||||    
T  17636730 ttgcattaatgtaaaggtggttcgacaaatcagattacatacattttgtatgactcttttctttagacgctggtgcttcgagtgctagaatt 17636821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 89 - 212
Target Start/End: Complemental strand, 15438103 - 15437975
Alignment:
Q  89 gtggttcgacaaatcagattacatacattttgt--gactcttttctctagacgctgatacttcgagtgctagaattg---taagtgatttgcgacccttt 183  Q
    |||||||||||||||| |||||||||||| |||  ||||||||||||||||||  | |||||||||||||||||||    | ||||||||||||||  ||    
T  15438103 gtggttcgacaaatcaaattacatacattctgtatgactcttttctctagacgtcggtacttcgagtgctagaatttctattagtgatttgcgacctatt 15438004  T
Q  184 ttccttatgaaaaactactatatatacat 212  Q
    || | ||||||||||||| || |||||||    
T  15438003 tttcatatgaaaaactacaatttatacat 15437975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 66 - 209
Target Start/End: Original strand, 2482037 - 2482184
Alignment:
Q  66 aattgtattgcattgaagtaaatgtggttcgacaaatcagattacatacatt--ttgtgactcttttctctagacgctgatacttcgagtgctagaat-- 161  Q
    ||||| |||||||| | |||||  ||||||||||||||| ||||||||||||   | ||||||||||||||||||   | ||||||||||||||||||      
T  2482037 aattgcattgcattaatgtaaagatggttcgacaaatcaaattacatacattccgtatgactcttttctctagacatcggtacttcgagtgctagaattc 2482136  T
Q  162 tgtaagtgatttgcgaccctttttccttatgaaaaactactatatata 209  Q
    | ||||||||||||||||| |||| |  |||||||||| |||| ||||    
T  2482137 tataagtgatttgcgacccatttttcgaatgaaaaacttctatttata 2482184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 107 - 197
Target Start/End: Original strand, 19919462 - 19919553
Alignment:
Q  107 ttacatacattttgtgactcttttctctagacgctgatacttcgagtgctagaat--tgtaagtgatttgcgaccctttttccttatgaaaaa 197  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||  | ||| ||||||||||| | |||||| |||||||||    
T  19919462 ttacatacattatgtgactcttttctctagacgctggtacttcgagtgctagaattctataaatgatttgcgacacgttttcc-tatgaaaaa 19919553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 66 - 212
Target Start/End: Complemental strand, 17162083 - 17161933
Alignment:
Q  66 aattgtattgcattgaagtaaatgtggttcgacaaatcagattacatacattttgt--gactcttttctctagacgctgatacttcgagtgctagaattg 163  Q
    ||||| |||||||| |  |||| |||| |||||||||||||||||||||||| |||  || |||||||| | || |||  ||||| |||||||||||||     
T  17162083 aattgcattgcattaatataaaggtggctcgacaaatcagattacatacattctgtatgattcttttctttggatgctcgtactttgagtgctagaattc 17161984  T
Q  164 t--aagtgatttgcgaccctttttccttatgaaaaactactatatatacat 212  Q
    |  ||||||| ||||||  |||||||| |||| ||||||||||||||||||    
T  17161983 tctaagtgatatgcgacattttttcctaatgataaactactatatatacat 17161933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 66 - 212
Target Start/End: Complemental strand, 21498204 - 21498054
Alignment:
Q  66 aattgtattgcattgaagtaaatgtggttcgacaaatcagattacatacattttg--tgactcttttctctagacgctgatacttcgagtgctagaat-- 161  Q
    ||||| |||||||| | ||||| |||||||||||||||||||||||||| || ||  |||||||| | | |||||||  ||||||| |||||||||||      
T  21498204 aattgcattgcattaatgtaaaagtggttcgacaaatcagattacatacgttatgtatgactcttgtttatagacgccaatacttcaagtgctagaattc 21498105  T
Q  162 tgtaagtgatttgcgaccctttttccttatgaaaaactactatatatacat 212  Q
    | ||| ||||||||||||  |||  | |||||||||||||||| |||||||    
T  21498104 tataaatgatttgcgacctatttctcatatgaaaaactactatttatacat 21498054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 83 - 162
Target Start/End: Complemental strand, 28760725 - 28760644
Alignment:
Q  83 gtaaatgtggttcgacaaatcagattacatacattttgt--gactcttttctctagacgctgatacttcgagtgctagaatt 162  Q
    ||||| ||||||||||||||||| ||||||||||| | |  ||||||||||||||||||| | |||||||||||||||||||    
T  28760725 gtaaaggtggttcgacaaatcagtttacatacattctatatgactcttttctctagacgccggtacttcgagtgctagaatt 28760644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 221
Target Start/End: Complemental strand, 30999984 - 30999827
Alignment:
Q  66 aattgtattgcattgaagtaaatgtggttcgacaaatcagattacatacattttgtgactcttttctctagacgctgatacttcgagtgctagaat--tg 163  Q
    ||||| |||||| | ||||||| || ||||||||||||||||||||||||||   ||| ||| ||||||| | | |||||||| ||||||| ||||  |     
T  30999984 aattgcattgcactaaagtaaaagtagttcgacaaatcagattacatacattcgatgaatctcttctctaaatgttgatactttgagtgctggaattata 30999885  T
Q  164 taagtgatttgcgaccctttttccttatgaaaaactactatatatacatggagaaaat 221  Q
    ||||||||||| ||||| |||| | ||||||||| |  ||||||||||| || |||||    
T  30999884 taagtgatttgtgacccgtttttcctatgaaaaattgttatatatacatagataaaat 30999827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 60 - 162
Target Start/End: Complemental strand, 16467388 - 16467286
Alignment:
Q  60 aaagtgaattgtattgcattgaagtaaatgtggttcgacaaatcagattacatacattttgtgactcttttctctagacgctgatacttcgagtgctaga 159  Q
    ||||| ||||| |||||||| ||||||| || |||||||||||||  ||||| | ||||||||||||||||||||| ||  || ||||| | ||||||||    
T  16467388 aaagtaaattgcattgcattaaagtaaaagttgttcgacaaatcaagttacaaatattttgtgactcttttctctaaacaatgttactttgggtgctaga 16467289  T
Q  160 att 162  Q
    |||    
T  16467288 att 16467286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 89 - 212
Target Start/End: Original strand, 23389159 - 23389283
Alignment:
Q  89 gtggttcgacaaatcagattacatacattttgtgactcttttctctagacgctgatacttcgagtgctagaa--ttgtaagtgatttgcgaccctttttc 186  Q
    |||||||||||||| |  ||||||||||| ||||||| |||| |||||| || ||||||| |||||||||||  || ||| ||||||| ||||| ||||     
T  23389159 gtggttcgacaaattaagttacatacattctgtgact-ttttatctagatgccgatactttgagtgctagaattttataaatgatttgtgacccgttttt 23389257  T
Q  187 cttatgaaaaactactatatatacat 212  Q
    | ||||||||| || ||| |||||||    
T  23389258 cctatgaaaaattattatttatacat 23389283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 31475894 - 31475938
Alignment:
Q  168 tgatttgcgaccctttttccttatgaaaaactactatatatacat 212  Q
    ||||||| |||||||||| | ||||||||||||||||||||||||    
T  31475894 tgatttgtgacccttttttcctatgaaaaactactatatatacat 31475938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 121
Target Start/End: Complemental strand, 29891390 - 29891335
Alignment:
Q  66 aattgtattgcattgaagtaaatgtggttcgacaaatcagattacatacattttgt 121  Q
    ||||| |||||||| || |||||||||||||||| |||||  ||||||||||||||    
T  29891390 aattgcattgcattaaaataaatgtggttcgacatatcagtgtacatacattttgt 29891335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 212
Target Start/End: Complemental strand, 31404148 - 31404019
Alignment:
Q  89 gtggttcgacaaatcagattacatacattttgtg--actcttttctctagacgctgatacttcgagtgct--agaattg---taagtgatttgcgaccct 181  Q
    ||||||||||||||||  ||||||||||| |||   |||||||||||| | ||| | ||||||||||| |  ||||||    |||||||||||||||||     
T  31404148 gtggttcgacaaatcattttacatacattctgtataactcttttctctcg-cgccggtacttcgagtgttttagaatttcaataagtgatttgcgaccca 31404050  T
Q  182 ttttccttatgaaaaactactatatatacat 212  Q
    |||||  |||| ||||||||||| |||||||    
T  31404049 ttttcaatatggaaaactactatttatacat 31404019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 17162132 - 17162092
Alignment:
Q  1 caagtaaaagactt-aaaagtttaaacacagaaacttaaag 40  Q
    |||||||||||||| ||||||||||||||| ||||||||||    
T  17162132 caagtaaaagactttaaaagtttaaacacaaaaacttaaag 17162092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 60 - 212
Target Start/End: Complemental strand, 45280006 - 45279854
Alignment:
Q  60 aaagtgaattgtattgcattgaagtaaatgtggttcgacaaatcagattacatacattttgtgactcttttctctagacgctgatacttcgagtgctaga 159  Q
    ||||| ||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||  ||||||||  ||| ||| || || ||||||||||    
T  45280006 aaagtaaattgcattgcattaaagtagatgtggttcgacaaatcagattacatacattttgtga--cttttctcaggacactgctattttgagtgctaga 45279909  T
Q  160 at--tgtaagtgatttgcgaccctttttccttatgaaaaactactatatatacat 212  Q
    ||  | ||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  45279908 attatataagtgatttgtgacccttttttcttatgaaaaactactatatatacat 45279854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 66 - 209
Target Start/End: Complemental strand, 17439201 - 17439054
Alignment:
Q  66 aattgtattgcattgaagtaaatgtggttcgacaaatcagattacatacattt--tgtgactcttttctctagacgctgatacttcgagtgctagaat-- 161  Q
    ||||| |||||||| | |||||||| |||||||||||||||||||||| ||||  | |||||||||||||| ||||||| |||||||||| |||||||      
T  17439201 aattgcattgcattaatgtaaatgtagttcgacaaatcagattacatatattttatatgactcttttctctggacgctggtacttcgagtcctagaattc 17439102  T
Q  162 tgtaagtgatttgcgaccctttttccttatgaaaaactactatatata 209  Q
    | ||| | |||||||||||| ||| |||||||||||||||||||||||    
T  17439101 tataactaatttgcgaccctcttttcttatgaaaaactactatatata 17439054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 72 - 209
Target Start/End: Original strand, 15987590 - 15987731
Alignment:
Q  72 attgcattgaagtaaatgtggttcgacaaatcagattacatacattttg--tgactcttttctctagacgctgatacttcgagtgctagaat--tgtaag 167  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||||  ||||| |||||||| ||||||  || || ||||||||||||  | ||||    
T  15987590 attgcattaatgtaaatgtggttcgacaaatcagattacatacattttgtatgacttttttctctcgacgctagtattttgagtgctagaattctttaag 15987689  T
Q  168 tgatttgcgaccctttttccttatgaaaaactactatatata 209  Q
    |||||| |||| |||||| |||||||||||||| ||||||||    
T  15987690 tgatttacgactcttttttcttatgaaaaactattatatata 15987731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 72 - 212
Target Start/End: Original strand, 25321179 - 25321321
Alignment:
Q  72 attgcattgaagtaaatgtggttcgacaaatcagattacatacattttgtgactcttttctctagacgctgatacttcgagtgctagaat--tgtaagtg 169  Q
    |||||||| | |||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||| || |||||||||  | ||||||    
T  25321179 attgcattaatgtaaatatggtttgacaaatcagattacatatattttgtgactcttttctctagacgctggtactttgaatgctagaattctataagtg 25321278  T
Q  170 atttgcgaccctttttccttatgaaaaactactatatatacat 212  Q
    |||  ||| | ||||| |||||| ||||||| |||||||||||    
T  25321279 attaacgagctttttttcttatgtaaaactattatatatacat 25321321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 66 - 221
Target Start/End: Complemental strand, 4026466 - 4026310
Alignment:
Q  66 aattgtattgcattgaagtaaatgtggttcgacaaatcagattacatacattttgtgactcttttctctagacgctgatacttcgagtgctagaat--tg 163  Q
    ||||| ||||||||   ||||| |||||||||||||| |||||||||| ||| |||||||||||| ||||||||||| |||||   ||||||||||  |     
T  4026466 aattgcattgcattagtgtaaaggtggttcgacaaattagattacatatattatgtgactcttttttctagacgctggtacttttggtgctagaattcta 4026367  T
Q  164 taagtgatttgcgaccctttttccttatgaaaaactactatatatacatggagaaaat 221  Q
    || |||||||| || ||||||||||||||||||||||||||||| |||| ||||||||    
T  4026366 tatgtgatttggga-cctttttccttatgaaaaactactatatacacatagagaaaat 4026310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 66 - 212
Target Start/End: Complemental strand, 53589198 - 53589044
Alignment:
Q  66 aattgtattgcattgaagtaaatgtggttcgacaaatcagattacat---acattttg--tgactcttttctctagacgctgatacttcgagtgctagaa 160  Q
    ||||| ||||||||   ||||| ||||||||||||||||||||||||   ||||||||  |||| ||||||||| |||| || |||||||||||||||||    
T  53589198 aattgcattgcatttgtgtaaaagtggttcgacaaatcagattacatacaacattttgtatgacacttttctctggacgttggtacttcgagtgctagaa 53589099  T
Q  161 t--tgtaagtgatttgcgacc-ctttttccttatgaaaaactactatatatacat 212  Q
    |  | ||||||||||||||||  |||||||| |||||||||||||||||||||||    
T  53589098 ttctataagtgatttgcgaccattttttcctaatgaaaaactactatatatacat 53589044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 72 - 221
Target Start/End: Original strand, 17132724 - 17132877
Alignment:
Q  72 attgcattgaagtaaatgtggttcgacaaatcagattacatacattttgtgactcttttctctagacgctgatacttcgagtgctagaattgta----ag 167  Q
    |||||||| ||||||| ||||||||||||||||  ||||||||||| ||||||| |||| |||| |||||| |||||  |||||||||||| ||    |     
T  17132724 attgcattaaagtaaaggtggttcgacaaatcaagttacatacattatgtgacttttttatctaaacgctggtactttcagtgctagaattctataataa 17132823  T
Q  168 tgatttgcgaccctttttccttatgaaaaactactatatatacatggagaaaat 221  Q
    ||||||| || || |||| | |||||||||||||||||||||||| ||||||||    
T  17132824 tgatttgtgaaccgtttttcctatgaaaaactactatatatacatagagaaaat 17132877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 90 - 212
Target Start/End: Complemental strand, 44450924 - 44450800
Alignment:
Q  90 tggttcgacaaatcagattacatacattttgtgactcttttctctagacgctgatacttcgagtgctagaa--ttgtaagtgatttgcgaccctttttcc 187  Q
    |||||||||||||||  ||||||||||| |||||||||||||||||||||| | |||||||||||||||||  || ||| ||||||||||||  ||||      
T  44450924 tggttcgacaaatcaagttacatacattatgtgactcttttctctagacgccggtacttcgagtgctagaattttataaatgatttgcgacctctttttt 44450825  T
Q  188 ttatgaaaaactactatatatacat 212  Q
    | ||||||||||| ||| |||||||    
T  44450824 tcatgaaaaactattatttatacat 44450800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 66 - 212
Target Start/End: Original strand, 1745104 - 1745253
Alignment:
Q  66 aattgtattgcattgaagtaaatgtggttcgacaaatcagatt-acatacattttgtgactcttttctctagacgctgatacttcgagtgctagaattg- 163  Q
    ||||| |||||||| | ||||| ||| || ||||||||||||| | ||||||| |||||||| ||||||| ||||||| ||||| |||||||| ||||      
T  1745104 aattgcattgcattaatgtaaaggtgattagacaaatcagatttaaatacattatgtgactcgtttctctggacgctggtactttgagtgctataattca 1745203  T
Q  164 -taagtgatttgcgaccctttttccttatgaaaaactactatatatacat 212  Q
     |||| ||||||||||  |||||  |||||||||||||||||||||||||    
T  1745204 ataagggatttgcgacatttttttgttatgaaaaactactatatatacat 1745253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 90 - 212
Target Start/End: Complemental strand, 14132173 - 14132047
Alignment:
Q  90 tggttcgacaaatcagattacatacattttgt--gactcttttctctagacgctgatacttcgagtgctagaattgta--agtgatttgcgacccttttt 185  Q
    |||||| | |||||||||||||||||||||||  ||||||||||||||||||   ||||||| | |||||||||| ||  |||||||||| |||  ||||    
T  14132173 tggttcaataaatcagattacatacattttgtatgactcttttctctagacgaaaatacttcaactgctagaattctataagtgatttgcaacctctttt 14132074  T
Q  186 ccttatgaaaaactactatatatacat 212  Q
    || |||||||||||||||| |||||||    
T  14132073 ccgtatgaaaaactactatttatacat 14132047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 66 - 212
Target Start/End: Complemental strand, 27718050 - 27717900
Alignment:
Q  66 aattgtattgcattgaagtaaatgtggttcgacaaatcagattacatacattttg--tgactcttttctctagacgctgatacttcgagtgctagaat-- 161  Q
    ||||| |||||||| | ||||| ||||||||| ||||||||||||||||||| ||  | |||||||  |||| |||| | ||||||||||||||||||      
T  27718050 aattgcattgcattaatgtaaaggtggttcgataaatcagattacatacattctgtataactctttcttctaaacgccggtacttcgagtgctagaattc 27717951  T
Q  162 tgtaagtgatttgcgaccctttttccttatgaaaaactactatatatacat 212  Q
    | ||||||||||| ||||  |||| | |||||||||||| ||| |||||||    
T  27717950 tataagtgatttgggacctatttttcatatgaaaaactaatatttatacat 27717900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 200
Target Start/End: Original strand, 12145019 - 12145157
Alignment:
Q  66 aattgtattgcattgaagtaaatgtggttcgacaaatcagattacatacattttg--tgactcttttctctagacgctgatacttcgagtgctagaat-- 161  Q
    ||||| |||| ||| | ||||| |||||  ||||||| |||||||||||||||||  |||||||||| ||| || || ||||||| ||||||||||||      
T  12145019 aattgcattgtattaatgtaaaggtggtatgacaaattagattacatacattttgtatgactcttttatctggatgccgatactttgagtgctagaattc 12145118  T
Q  162 tgtaagtgatttgcgaccctttttccttatgaaaaacta 200  Q
    | |||||||||||||||   |||| | ||||||||||||    
T  12145119 tataagtgatttgcgacatatttttcatatgaaaaacta 12145157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 66 - 221
Target Start/End: Complemental strand, 4022802 - 4022646
Alignment:
Q  66 aattgtattgcattgaagtaaatgtggttcgacaaatcagattacatacattttgtgactcttttctctagacgctgatacttcgagtgctagaa--ttg 163  Q
    ||||| ||| |||| | |||||||| ||| | |||| ||||||||| | | |||||||||||||| | | |||||   ||||| |||| ||||||   |     
T  4022802 aattgcatttcattaatgtaaatgtagttaggcaaaccagattacaaaaaatttgtgactcttttatgtggacgcgagtactttgagttctagaactcta 4022703  T
Q  164 taagtgatttgcgaccctttttccttatgaaaaactactatatatacatggagaaaat 221  Q
    |||||||||||| ||||||||| |||||||||||||| |||||||||||  |||||||    
T  4022702 taagtgatttgcaacccttttt-cttatgaaaaactattatatatacatatagaaaat 4022646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 84 - 212
Target Start/End: Original strand, 15759622 - 15759757
Alignment:
Q  84 taaatgtggttcgacaaatcagattacataca--ttttgtgactcttttctctagacgctgatacttcgagtg-ctagaat---tgtaagtgatttgcga 177  Q
    |||| |||||| ||||||||||||||||||||   | | |||||||||||||||||||| | |||||| ||||  ||||||   | ||| ||||||||||    
T  15759622 taaaggtggtttgacaaatcagattacatacaatctatatgactcttttctctagacgccggtacttctagtgtttagaatttctataaatgatttgcga 15759721  T
Q  178 ccctttttccttatgaa-aaactactatatatacat 212  Q
    ||| |||||| |||||| |||||||||| |||||||    
T  15759722 cccattttccatatgaataaactactatttatacat 15759757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 140
Target Start/End: Complemental strand, 7536206 - 7536130
Alignment:
Q  66 aattgtattgcattgaagtaaatgtggttcgacaaatcagattacatacattttg--tgactcttttctctagacgc 140  Q
    |||||||||||||| | ||||| ||| |||||||||||| |||||||||||||||  ||||| |||||| |||||||    
T  7536206 aattgtattgcattaatgtaaaggtgattcgacaaatcaaattacatacattttgtatgactattttctttagacgc 7536130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 83 - 162
Target Start/End: Original strand, 48896074 - 48896155
Alignment:
Q  83 gtaaatgtggttcgacaaatcagattacatacattttg--tgactcttttctctagacgctgatacttcgagtgctagaatt 162  Q
    ||||| ||||||||||||| ||| ||||||||||| ||  |||||||||||||||||||  | | |||||||||||| ||||    
T  48896074 gtaaaggtggttcgacaaaccagtttacatacattatgtatgactcttttctctagacgtcggtgcttcgagtgctataatt 48896155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 41
Target Start/End: Complemental strand, 44451002 - 44450968
Alignment:
Q  7 aaagacttaaaagtttaaacacagaaacttaaaga 41  Q
    |||||||||||||||||||| ||||||||||||||    
T  44451002 aaagacttaaaagtttaaacgcagaaacttaaaga 44450968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 4022863 - 4022830
Alignment:
Q  1 caagtaaaagacttaaaagtttaaacacagaaac 34  Q
    |||||||||||||||||||||||||| |||||||    
T  4022863 caagtaaaagacttaaaagtttaaacgcagaaac 4022830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 25321132 - 25321165
Alignment:
Q  8 aagacttaaaagtttaaacacagaaacttaaaga 41  Q
    ||||||||||||||||||| ||||||||||||||    
T  25321132 aagacttaaaagtttaaacgcagaaacttaaaga 25321165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 66 - 215
Target Start/End: Original strand, 10236069 - 10236220
Alignment:
Q  66 aattgtattgcattgaagtaaatgtggttcgacaaatcagattacatacattttgtgactcttttctctagacgctgatacttcgagtgctagaat--tg 163  Q
    ||||| |||||||| || |||| ||||||| ||||||| ||||||||||||| ||||||||||||||||| |||||| ||||| ||||||||||||  |     
T  10236069 aattgcattgcattaaaataaaagtggttcaacaaatccgattacatacattatgtgactcttttctctaaacgctggtactttgagtgctagaattata 10236168  T
Q  164 taagtgatttgcgaccctttttccttatgaaaaactactatatatacatgga 215  Q
    ||| ||||||| ||||| |||| ||||||||||||||| || |||| |||||    
T  10236169 taaatgatttgtgacccatttttcttatgaaaaactacaatttatatatgga 10236220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 60 - 204
Target Start/End: Original strand, 24663563 - 24663711
Alignment:
Q  60 aaagtgaattgtattgcattgaagtaaatgtggttcgacaaatcagattacatacattttg--tgactcttttctctagacgctgatacttcgagtgcta 157  Q
    ||||| ||||| |||||||| | ||||| ||||||| ||||||||||||||||||||| ||  |||||||| ||||||||||||| ||||||||||||||    
T  24663563 aaagtaaattgcattgcattaatgtaaaggtggttcaacaaatcagattacatacattatgtatgactcttatctctagacgctggtacttcgagtgcta 24663662  T
Q  158 gaatt--gtaagtgatttgcgaccctttttccttatgaaaaactactat 204  Q
    |||||   |||   ||||||||||| |||| | |||| |||||||||||    
T  24663663 gaattcaataaacaatttgcgacccatttttcatatggaaaactactat 24663711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 72 - 203
Target Start/End: Complemental strand, 31533114 - 31532979
Alignment:
Q  72 attgcattgaagtaaatgtggttcgacaaatcagattacatacat--tttgtgactcttttctctagacgctgatacttcgagtgctagaat--tgtaag 167  Q
    |||||||| | ||||| ||||||||||||||||||||||||||||  | | |||||||||||| ||||||| | ||||||||||||||||||  | ||||    
T  31533114 attgcattaatgtaaaggtggttcgacaaatcagattacatacattctctatgactcttttctttagacgccggtacttcgagtgctagaattctataag 31533015  T
Q  168 tgatttgcgaccctttttccttatgaaaaactacta 203  Q
    ||||||||||||  |||||| |||| |||| |||||    
T  31533014 tgatttgcgacctattttccatatggaaaagtacta 31532979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 66 - 162
Target Start/End: Complemental strand, 30985629 - 30985533
Alignment:
Q  66 aattgtattgcattgaagtaaatgtggttcgacaaatcagattacatacattttgtgactcttttctctagacgctgatacttcgagtgctagaatt 162  Q
    ||||| |||||||| || |||||||||||||||||||||||||||||||||  |||||||||||||  || |||||| ||||| |||||||||||||    
T  30985629 aattgcattgcattaaaataaatgtggttcgacaaatcagattacatacatcctgtgactcttttcattaaacgctggtactttgagtgctagaatt 30985533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 90 - 212
Target Start/End: Original strand, 9423165 - 9423291
Alignment:
Q  90 tggttcgacaaatcagattacatacattttgtgactcttttctctagacgctgatacttcgagtgctagaa--ttgtaagtgatttgcgacc--cttttt 185  Q
    |||||||||||||||  ||||||||||  |||||||||||||||||||||| | |||||||||||||||||  || ||| ||||||||||||   |||||    
T  9423165 tggttcgacaaatcaagttacatacatcatgtgactcttttctctagacgccggtacttcgagtgctagaattttataaatgatttgcgacctttttttt 9423264  T
Q  186 ccttatgaaaaactactatatatacat 212  Q
    | | ||||||||||| ||| |||||||    
T  9423265 cttcatgaaaaactattatttatacat 9423291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 66 - 162
Target Start/End: Original strand, 24309068 - 24309165
Alignment:
Q  66 aattgtattgcattgaagtaaatgtggttcgacaaatcagattacatacattttg--tgactcttttctctagacgctgatacttcgagtgctagaatt 162  Q
    ||||| |||| ||| | ||||| || |||||||||||||||||||||| ||| ||  |||||||||||||||||||||| |||||||||||||||||||    
T  24309068 aattgcattgtattaatgtaaaggtagttcgacaaatcagattacatatattctgtatgactcttttctctagacgctg-tacttcgagtgctagaatt 24309165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 66 - 162
Target Start/End: Complemental strand, 24364258 - 24364161
Alignment:
Q  66 aattgtattgcattgaagtaaatgtggttcgacaaatcagattacatacattttg--tgactcttttctctagacgctgatacttcgagtgctagaatt 162  Q
    ||||| |||| ||| | ||||| || |||||||||||||||||||||| ||| ||  |||||||||||||||||||||| |||||||||||||||||||    
T  24364258 aattgcattgtattaatgtaaaggtagttcgacaaatcagattacatatattctgtatgactcttttctctagacgctg-tacttcgagtgctagaatt 24364161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 139
Target Start/End: Original strand, 22987745 - 22987820
Alignment:
Q  66 aattgtattgcattgaagtaaatgtggttcgacaaatcagattacatacattttg--tgactcttttctctagacg 139  Q
    ||||| |||||||| | ||||| ||||||||||| ||||||||||||||||||||  |||| ||||||||||||||    
T  22987745 aattgcattgcattaatgtaaaggtggttcgacatatcagattacatacattttgtatgacacttttctctagacg 22987820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 221
Target Start/End: Complemental strand, 30984834 - 30984777
Alignment:
Q  164 taagtgatttgcgaccctttttccttatgaaaaactactatatatacatggagaaaat 221  Q
    ||||||||||| || || |||| |||||||||||||||||||||||||| ||||||||    
T  30984834 taagtgatttgtgaaccatttttcttatgaaaaactactatatatacatagagaaaat 30984777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 138
Target Start/End: Complemental strand, 25667352 - 25667284
Alignment:
Q  72 attgcattgaagtaaatgtggttcgacaaatcagattacatacattttg--tgactcttttctctagac 138  Q
    |||||||| ||||| | ||||||||||||| || |||||| ||||||||  ||||||||||||||||||    
T  25667352 attgcattaaagtataggtggttcgacaaaacaaattacacacattttgtatgactcttttctctagac 25667284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 10236021 - 10236061
Alignment:
Q  1 caagtaaaagacttaaaagtttaaacacagaaacttaaaga 41  Q
    |||||||||||||||||||||||||  ||||||||||||||    
T  10236021 caagtaaaagacttaaaagtttaaatgcagaaacttaaaga 10236061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 162
Target Start/End: Original strand, 22848034 - 22848132
Alignment:
Q  66 aattgtattgcattgaagtaaatgtggttcgacaaatcagattacatacattttg--tgactcttttctctagacgctgatacttcgagtgctagaatt 162  Q
    ||||| |||||||| |  |||| ||| ||||||||||||||||||| | ||| ||  |||||||||||||||||| | | |||||| | ||||||||||    
T  22848034 aattgcattgcattaatataaaggtgattcgacaaatcagattacaaaaattatgactgactcttttctctagacacaggtacttctattgctagaatt 22848132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 212
Target Start/End: Original strand, 21390682 - 21390826
Alignment:
Q  72 attgcattgaagtaaatgtggttcgacaaatcagattacatacattttgt--gactcttttctctagacgctgatacttcgagtgctagaat--tgtaag 167  Q
    |||||||| | ||||| ||||||||||||||||  |||| || ||| |||  |||||||||||| ||| | || ||||||||||||| ||||  | |||     
T  21390682 attgcattaatgtaaaggtggttcgacaaatcaacttacgtatattatgtcggactcttttctccagaagttggtacttcgagtgcttgaattctataaa 21390781  T
Q  168 tgatttgcgaccctttttccttatgaaaaactactatatatacat 212  Q
    | ||||| ||||  |||| | |||||||||||| ||| |||||||    
T  21390782 taatttgtgacctatttttcatatgaaaaactattatttatacat 21390826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 199
Target Start/End: Complemental strand, 28619312 - 28619255
Alignment:
Q  144 tacttcgagtgctagaattgta--agtgatttgcgaccctttttccttatgaaaaact 199  Q
    |||||| |||||||||||| ||  ||||||||||||||| |||| |||||||||||||    
T  28619312 tacttctagtgctagaattctataagtgatttgcgacccatttttcttatgaaaaact 28619255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 212
Target Start/End: Complemental strand, 23379405 - 23379360
Alignment:
Q  167 gtgatttgcgaccctttttccttatgaaaaactactatatatacat 212  Q
    |||||||||||||| |||||| |||| ||||||||||| |||||||    
T  23379405 gtgatttgcgacccgttttccctatggaaaactactatttatacat 23379360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 212
Target Start/End: Complemental strand, 36499636 - 36499485
Alignment:
Q  66 aattgtattgcattgaagtaaatg-tggttcgacaaatcagattacatacattttgt--gactcttttctctagacgctgatacttcgagtgctagaatt 162  Q
    |||||||||||||| | ||||| | |||||||| |||||||||| ||| |||| | |  |||  ||||| |||||||||| ||||||||||  |||||||    
T  36499636 aattgtattgcattaatgtaaaaggtggttcgataaatcagattgcatccattatatatgacctttttcactagacgctggtacttcgagttttagaatt 36499537  T
Q  163 gta--agtgatttgcgaccctttttccttatgaaaaactactatatatacat 212  Q
     ||  |||||||| |||||  ||||   |||||||||||| ||| |||||||    
T  36499536 ctataagtgatttacgacctattttttatatgaaaaactattatttatacat 36499485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 30985677 - 30985637
Alignment:
Q  1 caagtaaaagacttaaaagtttaaacacagaaacttaaaga 41  Q
    |||||||||||||||||||||||||   |||||||||||||    
T  30985677 caagtaaaagacttaaaagtttaaatgtagaaacttaaaga 30985637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0431 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 83 - 212
Target Start/End: Complemental strand, 5178 - 5047
Alignment:
Q  83 gtaaatgtggttcgacaaatcagattacatacattttgt--gactcttttctctagacgctgatacttcgagtgctagaattgtaagtgatttgcgaccc 180  Q
    ||||| ||||||||||||||  | |||||||||||||||  ||||||||||||||||||| ||||||||||||| ||||||| ||  |||||||||||||    
T  5178 gtaaaggtggttcgacaaattggtttacatacattttgtatgactcttttctctagacgccgatacttcgagtgttagaattctatatgatttgcgaccc 5079  T
Q  181 tttttccttatgaaaaactactatatatacat 212  Q
     |||| | |||||||||||| ||| |||||||    
T  5078 gtttttcctatgaaaaactattatttatacat 5047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 66 - 221
Target Start/End: Original strand, 13962889 - 13963045
Alignment:
Q  66 aattgtattgcattgaagtaaatgtggttcgacaaatcagattacatacattttgtgactcttttctctagacgctgatacttcgagtgctagaat--tg 163  Q
    ||||| ||||||||   ||||| |||||||||||||| | |||||||| ||| |||||||||||| ||||||||||| |||||   ||||||||||  |     
T  13962889 aattgcattgcattagtgtaaaggtggttcgacaaattaaattacatatattatgtgactcttttatctagacgctggtacttttggtgctagaattcta 13962988  T
Q  164 taagtgatttgcgaccctttttccttatgaaaaactactatatatacatggagaaaat 221  Q
    || |||||||| || ||||||||||||||||||||||||||||| |||| ||||||||    
T  13962989 tatgtgatttggga-cctttttccttatgaaaaactactatatacacatagagaaaat 13963045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 90 - 221
Target Start/End: Complemental strand, 24633368 - 24633233
Alignment:
Q  90 tggttcgacaaatcagattacatacattttgt--gactcttttctctagacgctgatacttcgagtgctagaattg--taagtgatttgcgacccttttt 185  Q
    |||||| ||||||||||||||||||||| |||  |||||||| |||||||||||| |||||| |||||||||||    ||||||||||||  || |||||    
T  24633368 tggttctacaaatcagattacatacattatgtatgactctttcctctagacgctggtacttcaagtgctagaataccataagtgatttgcagccattttt 24633269  T
Q  186 ccttatgaaaaactactatatatacatggagaaaat 221  Q
     ||||||||||||||||||||||||||  |||||||    
T  24633268 tcttatgaaaaactactatatatacatatagaaaat 24633233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 83 - 212
Target Start/End: Original strand, 11821864 - 11821995
Alignment:
Q  83 gtaaatgtggttcgacaaatcagattacatacattttgtgactcttttctctagacgctgatacttcgagtgctagaat--tgtaagtgatttgcgaccc 180  Q
    ||||| ||||||||| ||||||  |||||||||||||||||||||||||||||||||||| |||||||| |||||||||  | ||| | ||||| |||||    
T  11821864 gtaaaggtggttcgataaatcaagttacatacattttgtgactcttttctctagacgctggtacttcgaatgctagaattctataaataatttgtgaccc 11821963  T
Q  181 tttttccttatgaaaaactactatatatacat 212  Q
     |||| | ||| |||||||| ||| |||||||    
T  11821964 gtttttcctataaaaaactattatttatacat 11821995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 84 - 199
Target Start/End: Original strand, 25018683 - 25018802
Alignment:
Q  84 taaatgtggttcgacaaatcagattacatacattttgt--gactcttttctctagacgctgatacttcgagtgctagaat--tgtaagtgatttgcgacc 179  Q
    |||| |||||||| ||||| || |||||||||||||||  ||||||||| |||||||||||||||||||||||| |||||  | ||||||||||||||||    
T  25018683 taaaggtggttcggcaaattagtttacatacattttgtatgactcttttttctagacgctgatacttcgagtgccagaattctataagtgatttgcgacc 25018782  T
Q  180 ctttttccttatgaaaaact 199  Q
      |||| | |||||||||||    
T  25018783 tgtttttcatatgaaaaact 25018802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 83 - 162
Target Start/End: Original strand, 23455190 - 23455271
Alignment:
Q  83 gtaaatgtggttcgacaaatcagattacatacattttg--tgactcttttctctagacgctgatacttcgagtgctagaatt 162  Q
    ||||| |||||||||||||||| |||||||||||||||  ||||||||||||| ||||| || |||||||||||||||||||    
T  23455190 gtaaaggtggttcgacaaatcatattacatacattttgtatgactcttttctcaagacgatggtacttcgagtgctagaatt 23455271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 67 - 200
Target Start/End: Complemental strand, 33379434 - 33379297
Alignment:
Q  67 attgtattgcattgaagtaaatgtggttcgacaaatcagattacatacattttgtg--actcttttctctagacgctgatacttcgagtgctagaa--tt 162  Q
    |||| |||||||| | |||||  ||||| ||||||||||||||||| |||||| |   ||||||||||||| |||||| |||||||||| ||||||  ||    
T  33379434 attgcattgcattaatgtaaagctggtttgacaaatcagattacattcattttatataactcttttctctatacgctggtacttcgagtactagaatttt 33379335  T
Q  163 gtaagtgatttgcgaccctttttccttatgaaaaacta 200  Q
     |||||||||||||||   |||| | ||||||||||||    
T  33379334 ataagtgatttgcgactaatttttcatatgaaaaacta 33379297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 22785161 - 22785097
Alignment:
Q  84 taaatgtggttcgacaaatcagattacatacattttgtgactcttttctctagacgctgatactt 148  Q
    |||| |||||||  |||||||  ||||||||||||||||||||||||||||| | |||| |||||    
T  22785161 taaaggtggttcaccaaatcaagttacatacattttgtgactcttttctctaaatgctggtactt 22785097  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 41
Target Start/End: Original strand, 25018621 - 25018656
Alignment:
Q  6 aaaagacttaaaagtttaaacacagaaacttaaaga 41  Q
    ||||||||||||||||||||| ||||||||||||||    
T  25018621 aaaagacttaaaagtttaaacgcagaaacttaaaga 25018656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 134
Target Start/End: Complemental strand, 24115309 - 24115243
Alignment:
Q  66 aattgtattgcattgaagtaaatgtggttcgacaaatcagattacatacattttgtgactcttttctct 134  Q
    ||||||||||||||||| ||||  |||||| ||||||    ||| ||||||||||||||||||||||||    
T  24115309 aattgtattgcattgaaataaagatggttcaacaaatat--ttatatacattttgtgactcttttctct 24115243  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 24633440 - 24633400
Alignment:
Q  1 caagtaaaagacttaaaagtttaaacacagaaacttaaaga 41  Q
    |||||||||||||| ||||||| ||| ||||||||||||||    
T  24633440 caagtaaaagactttaaagttttaacgcagaaacttaaaga 24633400  T

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Target: scaffold0148 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 84 - 211
Target Start/End: Original strand, 23042 - 23171
Alignment:
Q  84 taaatgtggttcgacaaatcagattacatacattttgtgactcttttctctagacgctgatacttcgagtgctagaat--tgtaagtgatttgcgaccct 181  Q
    |||||||||| | ||||||||||||| ||||||||||||||||||||||||| |||||| ||||| |||||| |||||  | ||| ||||||| |||       
T  23042 taaatgtggtacaacaaatcagattatatacattttgtgactcttttctctaaacgctggtactttgagtgcgagaattctataaatgatttgtgacttg 23141  T
Q  182 ttttccttatgaaaaactactatatataca 211  Q
    |||| | |||||||||||||||||||||||    
T  23142 tttttcatatgaaaaactactatatataca 23171  T

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Target: scaffold0024 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 72 - 212
Target Start/End: Complemental strand, 38979 - 38834
Alignment:
Q  72 attgcattgaagtaaatgtggttcgacaaatcagattacatacattt--tgtgactcttttctctagacgctgatacttcgagtgctagaat---tgtaa 166  Q
    |||||||| | ||||| ||||||||||||||||||||||||||||||  | |||||||||||||||||| | | || ||||||||||| |||   | |||    
T  38979 attgcattaatgtaaaggtggttcgacaaatcagattacatacattttatatgactcttttctctagacacaggtatttcgagtgctataatttctataa 38880  T
Q  167 gtgatttgcgaccctttttccttatgaaaaactactatatatacat 212  Q
    |||||||| ||||  |||||| |||| ||||||||||| |||||||    
T  38879 gtgatttgtgacctattttccatatggaaaactactatttatacat 38834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 66 - 212
Target Start/End: Complemental strand, 26999 - 26848
Alignment:
Q  66 aattgtattgcattgaagtaaatgtggttcgacaaatcagattacatacattttgt--gactcttttctctagacgctgatacttcgagtgct-agaatt 162  Q
    ||||| |||||||| || |||| |||||||||||||| |||||||||||||| |||  ||||||||||||||||||  | ||||||||||||| ||||||    
T  26999 aattgcattgcattaaa-taaaggtggttcgacaaattagattacatacattatgtatgactcttttctctagacgacggtacttcgagtgcttagaatt 26901  T
Q  163 g---taagtgatttgcgaccctttttccttatgaaaaactactatatatacat 212  Q
        ||| ||||||||||||| |||||| |||| ||||||||||| |||||||    
T  26900 tctataaatgatttgcgacccattttccatatggaaaactactatttatacat 26848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0167 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 66 - 212
Target Start/End: Complemental strand, 10374 - 10223
Alignment:
Q  66 aattgtattgcattgaagtaaatgtggttcgacaaatcagattacatacattttgt--gactcttttctctagacgctgatacttcgagtgctagaattg 163  Q
    ||||| ||| |||| | ||||| |||||| |||||||||||||||||||||| |||  |||||||||||||| |||  |||||||||||| || |||||     
T  10374 aattgcattacattaatgtaaaggtggtttgacaaatcagattacatacattatgtatgactcttttctctaaacgtcgatacttcgagttctggaattt 10275  T
Q  164 ---taagtgatttgcgaccctttttccttatgaaaaactactatatatacat 212  Q
       ||||||||||||||||  |||| | |||||||||||||||| |||||||    
T  10274 ctataagtgatttgcgacctatttttcatatgaaaaactactatttatacat 10223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 212
Target Start/End: Original strand, 6410 - 6561
Alignment:
Q  66 aattgtattgcattgaagtaaatgtggttcgacaaatcagattacatacattttgt--gactcttttctctagacgctgatacttcgagtgctagaattg 163  Q
    ||||| ||| |||| | ||||| | ||||||||||||||||||||||||||| |||  |||| |||||||||||||  |  ||||||| | ||||||||     
T  6410 aattgcattacattaatgtaaaggcggttcgacaaatcagattacatacattatgtatgactattttctctagacgtcggcacttcgaattctagaattt 6509  T
Q  164 ---taagtgatttgcgaccctttttccttatgaaaaactactatatatacat 212  Q
       ||||||||||||||||  |||| | |||||||||||||||| |||||||    
T  6510 ctataagtgatttgcgacctatttttcatatgaaaaactactatttatacat 6561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 162
Target Start/End: Complemental strand, 33334 - 33242
Alignment:
Q  72 attgcattgaagtaaatgtggttcgacaaatcagattacatacattttgt--gactcttttctctagacgctgatacttcgagtgctagaatt 162  Q
    |||||||| | ||||| |||||||||||| ||| |||||||||||| |||  ||||||||||||||||||| | |||||||||||||| ||||    
T  33334 attgcattaatgtaaaagtggttcgacaattcatattacatacattatgtatgactcttttctctagacgccggtacttcgagtgctaaaatt 33242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 162
Target Start/End: Original strand, 48278 - 48359
Alignment:
Q  83 gtaaatgtggttcgacaaatcagattacatacattttg--tgactcttttctctagacgctgatacttcgagtgctagaatt 162  Q
    ||||| ||||||||||||||||||||||||||||| ||  ||||||| |||||||||||  | |||||||| ||||||||||    
T  48278 gtaaaagtggttcgacaaatcagattacatacattctgtatgactctattctctagacgtcggtacttcgaatgctagaatt 48359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 212
Target Start/End: Complemental strand, 51714 - 51576
Alignment:
Q  72 attgcattgaagtaaatgtggttcgacaaatcagattacatacattttgtgactcttttctctagacgctgatacttcgagtgctagaattgta--agtg 169  Q
    |||||||| | ||||| ||||||||||||||||||||| |     | | ||||| |||||||||||||  | |||| |||||||||||||| ||  |  |    
T  51714 attgcattaatgtaaaagtggttcgacaaatcagattataa----tgtatgactattttctctagacgtcggtactgcgagtgctagaattctataaacg 51619  T
Q  170 atttgcgaccctttttccttatgaaaaactactatatatacat 212  Q
    |||| |||||| |||||| |||| ||||||||||| |||||||    
T  51618 atttacgacccattttccatatggaaaactactatttatacat 51576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1024 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold1024
Description:

Target: scaffold1024; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 83 - 221
Target Start/End: Complemental strand, 3025 - 2883
Alignment:
Q  83 gtaaatgtggttcgacaaatcagattacatacattttgt--gactcttttctctagacgctgatacttcgagtgctagaattgta--agtgatttgcgac 178  Q
    ||||| |||||||||||||||| |||| ||| |||||||  |||||||||||| ||||| || ||||||||||||||||||| ||  || ||||||| ||    
T  3025 gtaaaggtggttcgacaaatcatattaaatatattttgtatgactcttttctcaagacgatggtacttcgagtgctagaattctatgagagatttgcaac 2926  T
Q  179 cctttttccttatgaaaaactactatatatacatggagaaaat 221  Q
    |  ||||   |||||||||||| ||| ||||||| | ||||||    
T  2925 caattttttatatgaaaaactattatttatacatagtgaaaat 2883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 212
Target Start/End: Original strand, 13060 - 13105
Alignment:
Q  167 gtgatttgcgaccctttttccttatgaaaaactactatatatacat 212  Q
    |||||||||||||| |||||| |||| ||||||||||| |||||||    
T  13060 gtgatttgcgacccgttttccctatggaaaactactatttatacat 13105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1102 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1102
Description:

Target: scaffold1102; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 906 - 858
Alignment:
Q  164 taagtgatttgcgaccctttttccttatgaaaaactactatatatacat 212  Q
    |||||||||||| |||| |||||| |||| ||||||||||| |||||||    
T  906 taagtgatttgcaacccgttttccgtatggaaaactactatttatacat 858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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