View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17052_low_3 (Length: 518)
Name: NF17052_low_3
Description: NF17052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17052_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 490; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 20 - 517
Target Start/End: Original strand, 43360347 - 43360844
Alignment:
| Q |
20 |
catttttcaatagttacgttgttgtatgctaaattcatattctatgtatgctcagtgcagaagagtgaatattgtacattagtgtttctcatgtgctaat |
119 |
Q |
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| T |
43360347 |
catttttcaatagttacgttgttgtatgctaaattcatattctatgtatgctcagtgcagaagagtgaatattgtacattagtgtttctcatgtgctaat |
43360446 |
T |
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| Q |
120 |
ttatgatttaatggatgacctctttgacgcaaaagcatggacagagattatattagtagttgatttctcaaagtaatcggtgtaaattagtattaggagg |
219 |
Q |
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| T |
43360447 |
ttatgatttaatggatgacctctttgacgcaaaagcatggacagagattatattagtagttgatttctcaaagtaatcggtgtaaattagtattaggagg |
43360546 |
T |
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| Q |
220 |
taaattagtagtttatttctcaaggggaatgattgtgtactgcctaataactactgaaattaacaagataaaatttcagaacacgagagaattacctgct |
319 |
Q |
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| T |
43360547 |
taaattagtagtttatttctcaaggggaatgattgtgtactgcctaataactactgaaagtaacaagataaaatttcagaacacgagagaattacctgct |
43360646 |
T |
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| Q |
320 |
gaagcacaattaaagaggttacggtgacttctgctctgtgatggtttatagtttcaaatttcaagaggataacatttcttttgctaacacttgagatttt |
419 |
Q |
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| T |
43360647 |
gaagcacaattaaagaggttacggtgacttctgctctgtgatggtttatagtttcaaatttcaagaggataacatttcttttgctaacacttgagatttt |
43360746 |
T |
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| Q |
420 |
ttatattgcatgtttgcactgtcatgtttcctcttcaaacaatttcgtgaaaaataaaaactgtaaatgtcaagctcacttgaacttggccaaatatc |
517 |
Q |
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| T |
43360747 |
ttatattgcatgtttgcactgtcatgtttcctcttcaaacaatttcgtgaaaaataaaagctgtaaatgtcaagctcacttgaacttggccaaatatc |
43360844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 81 - 162
Target Start/End: Original strand, 43362688 - 43362768
Alignment:
| Q |
81 |
agagtgaatattgtacattagtgtttctcatgtgctaatttatgatttaatggatgacctctttgacgcaaaagcatggaca |
162 |
Q |
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| T |
43362688 |
agagtgaaagttgtacatttgtgtttctcatgtgctaaatt-taatttgatgcatgacctctttgacgcaaaagcatggaca |
43362768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 134 - 205
Target Start/End: Complemental strand, 17637674 - 17637603
Alignment:
| Q |
134 |
atgacctctttgacgcaaaagcatggacagagattatattagtagttgatttctcaaagtaatcggtgtaaa |
205 |
Q |
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| T |
17637674 |
atgacctctttgacccaaaagtatggacaaagattaaatcagtagttgatttctcaaaggaacaggtgtaaa |
17637603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 454
Target Start/End: Complemental strand, 49414504 - 49414449
Alignment:
| Q |
399 |
tttgctaacacttgagattttttatattgcatgtttgcactgtcatgtttcctctt |
454 |
Q |
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| T |
49414504 |
tttgctaacacttaagattttttacattgcacatttgcactgtcatatttcatctt |
49414449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 128
Target Start/End: Complemental strand, 49432368 - 49432331
Alignment:
| Q |
91 |
ttgtacattagtgtttctcatgtgctaatttatgattt |
128 |
Q |
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| T |
49432368 |
ttgtacattagtgtttttcatgtgctaaattatgattt |
49432331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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