View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17052_low_6 (Length: 426)
Name: NF17052_low_6
Description: NF17052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17052_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 13 - 390
Target Start/End: Complemental strand, 42636910 - 42636530
Alignment:
| Q |
13 |
tgagatgaagtaccgcttctattctctgatgatatattttatttacnnnnnnncaaagaatagagagacaagaaccatacta---tataattataaatta |
109 |
Q |
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| T |
42636910 |
tgagttgaagtaccgcttctattctctgatgatatattttatttacaaaaaaacaaagattagagagacaggaaccatactactatataattataaatta |
42636811 |
T |
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| Q |
110 |
ttgttagatggtgcattttgagaggtgtttttgaaatggaattctgtagtaggtccaaatgttcaatacaggggaatactggtgatcctcttaatatgga |
209 |
Q |
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|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
42636810 |
ttgttagatggtgcattttgagcggtgtttttgaaatagaattctgtagtaggtccaaatgttcaatacagggggatgctggtgatcctcttaatatgga |
42636711 |
T |
|
| Q |
210 |
gggtactttttgcacaaaaaacagaacggggtggtgttaaatgtaatctacttactattcttcagtgagatttgtacattgctttgcggcccattgacat |
309 |
Q |
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| T |
42636710 |
gggtactttttgcacaaaaaacagaacggggtggtgttaaatgtaatccacttactattcgtcagtgagattagtacattgctttgcggcccattgacat |
42636611 |
T |
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| Q |
310 |
caaataaatgcatatctcttttcccaccctacaaacctctttttcaccctctgtatttgcaattctatccgtttagattat |
390 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42636610 |
caaataaatgcatatctcttttcccaccctacaaacctctttttcaccctctgtatttgcaattctatccgtttagattat |
42636530 |
T |
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