View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17053_high_1 (Length: 354)
Name: NF17053_high_1
Description: NF17053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17053_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 45309228 - 45309570
Alignment:
| Q |
1 |
aacatcttcagaattgttgttgtttgcctattttcatagaccaaactgatcagatttgtctagaatacctaactaaaatattataataacacagattttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
45309228 |
aacatcttcagaattgttgttgtttgcctattttcatagaccaaactgatcagatttgtctagaatatctaactaaaatattataataacacagattttt |
45309327 |
T |
|
| Q |
101 |
cctacaagtaggtgtagaaagtataaaacacctcaatccagagtcgttcaactcaatactgttaaactaattcagca-----ttgttatgttaccttgat |
195 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
45309328 |
cctacaagtaggtgtagaaagtataaagcacctcaatccagagtcgttcaactcaatactgttaaactaattcagcattgttttgttatgttaccttgat |
45309427 |
T |
|
| Q |
196 |
gtacttagttgaccataagactcctttcatgatac-tttattaaccaaaagcatagaaaagagaatggaagagaagattaaaaaatacctctaggagacc |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45309428 |
gtacttagttgaccataagactcctttcatgatacttttattaaccaaaagcatagaaaagagaatggaagagaagattaaaaaatacctctaggagacc |
45309527 |
T |
|
| Q |
295 |
tggctctggtcctggtcttgtcctattcctatacatatataat |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45309528 |
tggctctggtcctggtcttgtcctattcctatacatatataat |
45309570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 151 - 311
Target Start/End: Original strand, 88043 - 88202
Alignment:
| Q |
151 |
actcaatactgttaaactaattcagcattgttatgttaccttgatgtacttagttgaccataagactcctttcatgatactttattaaccaaaagcatag |
250 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||| |||||||| ||||||||||||||||||||| ||| |
|
|
| T |
88043 |
actcaatactgttaaacaaattcagcattgttatgttaccctgatgtacttagttgaccttaagattcctttcaggatactttattaaccaaaagcgtag |
88142 |
T |
|
| Q |
251 |
aaaagagaatggaagagaagattaaaaaatacctctaggagacctggctctggtcctggtc |
311 |
Q |
| |
|
|||||||||||| | || ||| |||| |||||||||| ||||||||| |||||||||||| |
|
|
| T |
88143 |
aaaagagaatggcaaaggaga-taaagaatacctctaagagacctggtcctggtcctggtc |
88202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University