View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17053_high_4 (Length: 261)
Name: NF17053_high_4
Description: NF17053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17053_high_4 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 261
Target Start/End: Complemental strand, 24049959 - 24049716
Alignment:
| Q |
18 |
actaaagtactttacgtgagaccgataaattcaagtctctctgctaccattataacaaaaagctaatcaagat-catattgagggaattgtatgaataca |
116 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
24049959 |
actaaagtactttaagtgagaccgataaattcaagtctctctgctaccattataacaaaaagctaatcaagatccatattgagggaattgtatgaataca |
24049860 |
T |
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| Q |
117 |
tctgtttcaaattttctaacagtactttaaatttctttctgatgaccatttcaaacatcaatcaacattactttaaaatttccatggnnnnnnnnngatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
24049859 |
tctgtttcaaattttctaacagtactttaaattt-tttctgatgaccatttcaaacatcaatcaacattactttaaaatttccatggaaaaaaaaagatt |
24049761 |
T |
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| Q |
217 |
aaattaatttaagttgggaaaatattatactcctaaccaatgaac |
261 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24049760 |
aaattaatttaagttgggaaaatattatactcctaaccaatgaac |
24049716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 18 - 261
Target Start/End: Complemental strand, 24053102 - 24052859
Alignment:
| Q |
18 |
actaaagtactttacgtgagaccgataaattcaagtctctctgctaccattataacaaaaagctaatcaagatc-atattgagggaattgtatgaataca |
116 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
24053102 |
actaaagtactttaagtgagaccgataaattcaagtctctctgctaccattataacaaaaagctaatcaagatccatattgagggaattgtatcaataca |
24053003 |
T |
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| Q |
117 |
tctgtttcaaattttctaacagtactttaaatttctttctgatgaccatttcaaacatcaatcaacattactttaaaatttccatggnnnnnnnnngatt |
216 |
Q |
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| T |
24053002 |
tctgtttcaaattttctaactttactttaaatttctttctgatgaccatttcaaacaacaatcaacattactttaaaatttccatgg-aaaaaacagatt |
24052904 |
T |
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| Q |
217 |
aaattaatttaagttgggaaaatattatactcctaaccaatgaac |
261 |
Q |
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| T |
24052903 |
aaattaatttaagttgggaaaatattatattcctaaccaatgaac |
24052859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 24044923 - 24044741
Alignment:
| Q |
18 |
actaaagtactttacgtgagaccgataaattcaagtctctctgctaccattataacaaaaagctaat----caagatc-atattgagggaattgtatgaa |
112 |
Q |
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||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| || |||||||||| || |
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| T |
24044923 |
actaaagta-tttaagtgagactgataaattcaagtctctctgctaccattataacaaaaagctaattaatcaagatccatatcgatggaattgtatcaa |
24044825 |
T |
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| Q |
113 |
tacatctgtttcaaattttctaacagtactttaaatttctttctgatgaccatttcaaacatcaatcaacattactttaaaatt |
196 |
Q |
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||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24044824 |
tacatctgtttcaaattttctaaaattactttaaatttctttctgatgaccatttcaaacatcaatcaacattactttaaaatt |
24044741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 257
Target Start/End: Complemental strand, 24044736 - 24044692
Alignment:
| Q |
213 |
gattaaattaatttaagttgggaaaatattatactcctaaccaat |
257 |
Q |
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| T |
24044736 |
gattaaattaatttaagttgggaaaatataatattcctaatcaat |
24044692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 200
Target Start/End: Complemental strand, 24102403 - 24102320
Alignment:
| Q |
118 |
ctgtttcaaattttctaacagta---ctttaaatttctttctgatgaccatttcaaacatcaatcaacattactttaaaatttcca |
200 |
Q |
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| T |
24102403 |
ctgtttcaaattttctaacaatattacttcaaatttctatctaatgaccatttcaaatat--ttaaacattacattaaaatttcca |
24102320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 118 - 184
Target Start/End: Original strand, 4267934 - 4267998
Alignment:
| Q |
118 |
ctgtttcaaattttctaacagtactttaaatttctttctgatgaccatttcaaacatcaatcaacat |
184 |
Q |
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|||||||||||||||||||| |||||||||||||| ||||||||||||||| | |||||||||||| |
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| T |
4267934 |
ctgtttcaaattttctaacattactttaaatttctgtctgatgaccatttcca--atcaatcaacat |
4267998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 4261051 - 4261110
Alignment:
| Q |
139 |
tactttaaatttctttctgatgaccatttcaaacatcaatcaacattactttaaaatttcca |
200 |
Q |
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| T |
4261051 |
tactttaaatttctgtctgatgaccatttcaaatatc--taaacattactttaaaatttcca |
4261110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 90
Target Start/End: Original strand, 4294758 - 4294801
Alignment:
| Q |
47 |
ttcaagtctctctgctaccattataacaaaaagctaatcaagat |
90 |
Q |
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| T |
4294758 |
ttcaagtctctttgctgccattataacaaaaaactaatcaagat |
4294801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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