View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17053_low_1 (Length: 408)
Name: NF17053_low_1
Description: NF17053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17053_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 40 - 389
Target Start/End: Complemental strand, 8683572 - 8683222
Alignment:
| Q |
40 |
tccaatagccatttggaaacttgaacttatgatcaaagcaccttgaatccctctcattgtcatagtaaacctctaggaaattcaaacaaacatgtagaca |
139 |
Q |
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| T |
8683572 |
tccaatagccatttggaaacttgaacttatgatcaaagcaccttgaatccctctcattgtcatagtaaacctctaggaaattcaaacaaacatgtagaca |
8683473 |
T |
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| Q |
140 |
aagtcagcaaaatgaaaacgctaaagagtgaaacattttccatttataacatgtacgaaaaaa-cagaagcataaaaaatagtttgatttacctcataag |
238 |
Q |
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| T |
8683472 |
aagtcagcaaaatgaaaacgctaaagagtgaaacattttccatttataacatgtacgaaaaaaacagaagcataaaaaatagtttgatttacctcataag |
8683373 |
T |
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| Q |
239 |
gatctgtatatgcattatatctgctagcctgaacaatagaaattataggtattatgtaactgtatgaaccaacaattacaattggcaatcgagttccgaa |
338 |
Q |
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| T |
8683372 |
gatctgtatatgcattatatctgctagcctgaacaatagaaattataggtattatgtaactgtatgaaccaacaattacaattggcaatcgagttccgaa |
8683273 |
T |
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| Q |
339 |
caaagattgaaaaaatgtgcttagtccagacacaaatagaagtgtctgtat |
389 |
Q |
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| T |
8683272 |
caaagattgaaaaaatgtgcttagtccagacacaaatagaagtgtctgtat |
8683222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 229 - 374
Target Start/End: Complemental strand, 47579685 - 47579540
Alignment:
| Q |
229 |
acctcataaggatctgtatatgcattatatctgctagcctgaacaatagaaattataggtattatgtaactgtatgaaccaacaattacaattggcaatc |
328 |
Q |
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| T |
47579685 |
acctcataaggatctgtatatgaactgtatctgctagcttgaacagctgacataattggtatcatgtaagtgtatgaaccaacaactacacttggcaatc |
47579586 |
T |
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| Q |
329 |
gagttccgaacaaagattgaaaaaatgtgcttagtccagacacaaa |
374 |
Q |
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| T |
47579585 |
gggttccgaataaagattgaagaaacgtgctcagtccagaaacaaa |
47579540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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