View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17053_low_3 (Length: 331)

Name: NF17053_low_3
Description: NF17053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17053_low_3
NF17053_low_3
[»] chr6 (2 HSPs)
chr6 (13-158)||(34787315-34787460)
chr6 (224-331)||(34787142-34787249)
[»] chr5 (1 HSPs)
chr5 (13-53)||(2293737-2293777)
[»] chr2 (1 HSPs)
chr2 (272-328)||(40606933-40606989)
[»] chr8 (2 HSPs)
chr8 (269-324)||(3810689-3810744)
chr8 (269-328)||(40041307-40041367)
[»] chr7 (2 HSPs)
chr7 (273-328)||(26502573-26502628)
chr7 (273-328)||(26590086-26590141)
[»] chr4 (1 HSPs)
chr4 (269-324)||(44253881-44253936)
[»] chr3 (2 HSPs)
chr3 (273-328)||(33573585-33573640)
chr3 (273-327)||(33461231-33461285)


Alignment Details
Target: chr6 (Bit Score: 146; Significance: 7e-77; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 13 - 158
Target Start/End: Complemental strand, 34787460 - 34787315
Alignment:
Q  13 tagggttgggtctgcaactttggaagaagacatggctagggcttggaaaaccctaacgatagagaaagaggaagaatgtgtttttgtttctgttgagtgt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34787460 tagggttgggtctgcaactttggaagaagacatggctagggcttggaaaaccctaacgatagagaaagaggaagaatgtgtttttgtttctgttgagtgt 34787361  T
Q  113 gtaaatctttcttatttaaataggtttcttcacgggcttttcggct 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  34787360 gtaaatctttcttatttaaataggtttcttcacgggcttttcggct 34787315  T

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Target: chr6; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 224 - 331
Target Start/End: Complemental strand, 34787249 - 34787142
Alignment:
Q  224 caattcccttttgtttaaaactttaatcttacatatctttcctacggaagttatatcctacacccctatatttataccttcattccaacatttgacacaa 323  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  34787249 caattcccttttgtttaaaactttaatcttacatatctttcttacggaagttatatcctacacccctacatttataccttcattccaacatttgacacaa 34787150  T
Q  324 actactgt 331  Q
    ||||||||    
T  34787149 actactgt 34787142  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 2293737 - 2293777
Alignment:
Q  13 tagggttgggtctgcaactttggaagaagacatggctaggg 53  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  2293737 tagggttgggtctgcatctttggaagaagacatggctaggg 2293777  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 328
Target Start/End: Complemental strand, 40606989 - 40606933
Alignment:
Q  272 agttatatcctacacccctatatttataccttcattccaacatttgacacaaactac 328  Q
    ||||||| || ||||||||  |||||||||||||  |||||||||||||||||||||    
T  40606989 agttataccccacacccctgcatttataccttcaccccaacatttgacacaaactac 40606933  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 269 - 324
Target Start/End: Original strand, 3810689 - 3810744
Alignment:
Q  269 ggaagttatatcctacacccctatatttataccttcattccaacatttgacacaaa 324  Q
    |||||||||| || ||||||||| ||||||||||| |  |||||||||||||||||    
T  3810689 ggaagttataccccacacccctacatttataccttgaccccaacatttgacacaaa 3810744  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 328
Target Start/End: Complemental strand, 40041367 - 40041307
Alignment:
Q  269 ggaagttatatcctacacccct-atatttataccttcattccaacatttgacacaaactac 328  Q
    ||||||||||||| |||||||  | |||||||| ||||| ||||||||| |||||||||||    
T  40041367 ggaagttatatcccacacccccgacatttatacgttcatcccaacatttaacacaaactac 40041307  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 273 - 328
Target Start/End: Original strand, 26502573 - 26502628
Alignment:
Q  273 gttatatcctacacccctatatttataccttcattccaacatttgacacaaactac 328  Q
    |||||| || ||||||||| ||||||||||| |  |||||||||||||||||||||    
T  26502573 gttataccccacacccctacatttatacctttaccccaacatttgacacaaactac 26502628  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 273 - 328
Target Start/End: Complemental strand, 26590141 - 26590086
Alignment:
Q  273 gttatatcctacacccctatatttataccttcattccaacatttgacacaaactac 328  Q
    |||||| || ||||||||| ||||||||||| |  |||||||||||||||||||||    
T  26590141 gttataccccacacccctacatttatacctttaccccaacatttgacacaaactac 26590086  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 269 - 324
Target Start/End: Original strand, 44253881 - 44253936
Alignment:
Q  269 ggaagttatatcctacacccctatatttataccttcattccaacatttgacacaaa 324  Q
    |||||||||| || |||||| ||||||||||||||||  ||||||||| |||||||    
T  44253881 ggaagttataccccacacccatatatttataccttcaccccaacatttaacacaaa 44253936  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 273 - 328
Target Start/End: Original strand, 33573585 - 33573640
Alignment:
Q  273 gttatatcctacacccctatatttataccttcattccaacatttgacacaaactac 328  Q
    |||||| |||||||||||| ||||||||||| |  ||||||||| |||||||||||    
T  33573585 gttataccctacacccctacatttatacctttaccccaacatttaacacaaactac 33573640  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 327
Target Start/End: Original strand, 33461231 - 33461285
Alignment:
Q  273 gttatatcctacacccctatatttataccttcattccaacatttgacacaaacta 327  Q
    |||||| || ||||||||| ||||||||||| |  ||||||||||||||||||||    
T  33461231 gttataccccacacccctacatttatacctttaccccaacatttgacacaaacta 33461285  T

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