View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17053_low_4 (Length: 276)

Name: NF17053_low_4
Description: NF17053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17053_low_4
NF17053_low_4
[»] chr2 (31 HSPs)
chr2 (66-263)||(7609195-7609392)
chr2 (19-87)||(7609119-7609187)
chr2 (19-87)||(10009624-10009692)
chr2 (19-87)||(19540573-19540641)
chr2 (19-87)||(25829291-25829359)
chr2 (19-80)||(21537130-21537191)
chr2 (19-84)||(24576193-24576258)
chr2 (19-80)||(25037141-25037202)
chr2 (19-80)||(25041248-25041309)
chr2 (29-80)||(24377268-24377319)
chr2 (33-87)||(40782642-40782696)
chr2 (32-81)||(20568631-20568680)
chr2 (19-80)||(22187984-22188045)
chr2 (19-87)||(23595445-23595513)
chr2 (29-80)||(24850547-24850598)
chr2 (19-73)||(9015259-9015313)
chr2 (19-72)||(28140509-28140562)
chr2 (19-87)||(22260563-22260631)
chr2 (205-252)||(28559603-28559650)
chr2 (19-77)||(23235164-23235222)
chr2 (19-72)||(30667146-30667199)
chr2 (19-87)||(23184188-23184254)
chr2 (29-80)||(22454872-22454923)
chr2 (44-86)||(22776176-22776218)
chr2 (44-86)||(22781554-22781596)
chr2 (44-77)||(28550815-28550848)
chr2 (44-77)||(31327852-31327885)
chr2 (44-77)||(31334573-31334606)
chr2 (44-77)||(35743889-35743922)
chr2 (29-77)||(22317761-22317809)
chr2 (19-87)||(41121595-41121663)
[»] scaffold0210 (1 HSPs)
scaffold0210 (19-87)||(1823-1891)
[»] chr8 (28 HSPs)
chr8 (19-87)||(33083012-33083080)
chr8 (19-87)||(17267628-17267696)
chr8 (19-80)||(18321094-18321155)
chr8 (19-87)||(20382322-20382390)
chr8 (21-86)||(16189141-16189206)
chr8 (19-84)||(16681234-16681299)
chr8 (19-80)||(22745642-22745703)
chr8 (19-87)||(18719156-18719224)
chr8 (29-80)||(19943402-19943453)
chr8 (29-87)||(17525656-17525714)
chr8 (19-80)||(17441743-17441804)
chr8 (38-87)||(23263539-23263588)
chr8 (19-80)||(39693690-39693751)
chr8 (29-80)||(16207471-16207522)
chr8 (19-78)||(17701900-17701959)
chr8 (18-80)||(602655-602717)
chr8 (19-77)||(21933038-21933096)
chr8 (19-80)||(18121044-18121105)
chr8 (19-80)||(24646493-24646554)
chr8 (19-87)||(18679970-18680038)
chr8 (19-86)||(19707660-19707727)
chr8 (19-80)||(19156351-19156412)
chr8 (19-77)||(23185166-23185222)
chr8 (38-80)||(12757698-12757740)
chr8 (44-77)||(6407894-6407927)
chr8 (44-77)||(15336028-15336061)
chr8 (44-77)||(15425093-15425126)
chr8 (44-77)||(15516397-15516430)
[»] chr5 (22 HSPs)
chr5 (19-87)||(23412884-23412952)
chr5 (19-87)||(6512341-6512409)
chr5 (19-87)||(7745603-7745671)
chr5 (19-87)||(19536210-19536278)
chr5 (20-80)||(21072158-21072218)
chr5 (29-87)||(21910725-21910783)
chr5 (19-87)||(89332-89400)
chr5 (19-87)||(17815127-17815195)
chr5 (19-87)||(21198915-21198983)
chr5 (29-72)||(20551064-20551107)
chr5 (18-81)||(9398661-9398724)
chr5 (19-62)||(13545455-13545498)
chr5 (29-80)||(41566351-41566402)
chr5 (19-80)||(26784513-26784574)
chr5 (44-86)||(31118060-31118102)
chr5 (19-80)||(642625-642686)
chr5 (44-77)||(3245364-3245397)
chr5 (44-77)||(5430066-5430099)
chr5 (44-77)||(9089141-9089174)
chr5 (44-77)||(11994070-11994103)
chr5 (44-77)||(30115798-30115831)
chr5 (44-77)||(42243863-42243896)
[»] scaffold0171 (1 HSPs)
scaffold0171 (19-87)||(27309-27377)
[»] chr7 (37 HSPs)
chr7 (19-87)||(24788300-24788368)
chr7 (19-87)||(16316488-16316556)
chr7 (19-87)||(21283304-21283372)
chr7 (19-87)||(22577952-22578020)
chr7 (19-80)||(11793066-11793127)
chr7 (19-87)||(12366679-12366747)
chr7 (19-87)||(29935290-29935358)
chr7 (19-72)||(4494665-4494718)
chr7 (19-80)||(10883111-10883172)
chr7 (33-86)||(13260555-13260608)
chr7 (19-80)||(13302969-13303030)
chr7 (19-80)||(21695560-21695621)
chr7 (19-87)||(13692501-13692569)
chr7 (29-80)||(44467234-44467285)
chr7 (18-83)||(41842209-41842273)
chr7 (29-87)||(13648898-13648956)
chr7 (19-80)||(2913546-2913607)
chr7 (19-80)||(15468075-15468136)
chr7 (19-87)||(30945289-30945355)
chr7 (24-80)||(13137833-13137889)
chr7 (29-77)||(21692456-21692504)
chr7 (29-77)||(23279900-23279948)
chr7 (21-80)||(331806-331864)
chr7 (29-80)||(30026074-30026125)
chr7 (19-77)||(9069721-9069779)
chr7 (19-80)||(15088679-15088740)
chr7 (19-76)||(28409198-28409255)
chr7 (19-87)||(30944256-30944322)
chr7 (29-77)||(33691653-33691701)
chr7 (29-80)||(14193243-14193294)
chr7 (19-77)||(28622299-28622355)
chr7 (19-77)||(48236845-48236901)
chr7 (44-77)||(8183111-8183144)
chr7 (44-77)||(9709745-9709778)
chr7 (19-80)||(11319564-11319625)
chr7 (29-77)||(32264669-32264715)
chr7 (44-77)||(33605868-33605901)
[»] chr4 (27 HSPs)
chr4 (19-87)||(37435421-37435489)
chr4 (19-87)||(16632597-16632665)
chr4 (29-87)||(56034741-56034799)
chr4 (19-80)||(23123588-23123649)
chr4 (29-87)||(55380457-55380515)
chr4 (19-80)||(45833551-45833612)
chr4 (17-77)||(19884856-19884916)
chr4 (29-80)||(23750687-23750738)
chr4 (17-74)||(10073089-10073146)
chr4 (19-80)||(12811071-12811132)
chr4 (19-72)||(19620962-19621015)
chr4 (29-87)||(14604792-14604850)
chr4 (19-80)||(19911773-19911834)
chr4 (19-87)||(6641840-6641908)
chr4 (29-80)||(14904249-14904300)
chr4 (19-80)||(3395747-3395808)
chr4 (19-80)||(14833553-14833614)
chr4 (19-80)||(29680437-29680498)
chr4 (29-80)||(40846266-40846317)
chr4 (44-77)||(10693031-10693064)
chr4 (44-77)||(10906797-10906830)
chr4 (44-77)||(13576012-13576045)
chr4 (19-80)||(22089745-22089805)
chr4 (19-60)||(37985525-37985566)
chr4 (44-77)||(54680108-54680141)
chr4 (44-84)||(3105311-3105351)
chr4 (19-87)||(12601258-12601326)
[»] chr3 (25 HSPs)
chr3 (19-87)||(12963014-12963082)
chr3 (23-80)||(6090898-6090955)
chr3 (19-80)||(49642698-49642759)
chr3 (29-80)||(52920577-52920628)
chr3 (19-77)||(2561350-2561408)
chr3 (29-87)||(17238851-17238909)
chr3 (29-87)||(49553418-49553476)
chr3 (19-84)||(14392936-14393001)
chr3 (19-80)||(18121558-18121619)
chr3 (19-87)||(37467495-37467563)
chr3 (32-87)||(19888873-19888928)
chr3 (29-86)||(12726160-12726217)
chr3 (19-80)||(13948498-13948559)
chr3 (19-80)||(14969489-14969550)
chr3 (19-80)||(16658554-16658615)
chr3 (32-80)||(20646330-20646378)
chr3 (29-87)||(18142681-18142739)
chr3 (19-77)||(28582268-28582326)
chr3 (19-80)||(38177579-38177640)
chr3 (29-80)||(15903371-15903422)
chr3 (19-80)||(29951374-29951435)
chr3 (19-80)||(30000528-30000589)
chr3 (19-80)||(31303548-31303609)
chr3 (44-77)||(47207892-47207925)
chr3 (44-77)||(49666356-49666389)
[»] chr1 (23 HSPs)
chr1 (19-87)||(12284585-12284653)
chr1 (19-87)||(33256201-33256269)
chr1 (19-87)||(33276373-33276441)
chr1 (19-80)||(22154019-22154080)
chr1 (19-87)||(1578029-1578097)
chr1 (19-87)||(19717686-19717754)
chr1 (19-87)||(48704366-48704434)
chr1 (29-87)||(10757594-10757652)
chr1 (19-80)||(20954330-20954391)
chr1 (29-87)||(30893265-30893323)
chr1 (19-80)||(22600039-22600100)
chr1 (19-80)||(38282728-38282789)
chr1 (19-72)||(28492269-28492322)
chr1 (17-77)||(32785798-32785858)
chr1 (29-80)||(7309990-7310041)
chr1 (19-77)||(2268690-2268748)
chr1 (53-87)||(12284651-12284685)
chr1 (19-80)||(1900507-1900568)
chr1 (29-80)||(26701986-26702037)
chr1 (44-77)||(2327301-2327334)
chr1 (44-77)||(10251161-10251194)
chr1 (44-77)||(21702998-21703031)
chr1 (19-86)||(2267251-2267316)
[»] scaffold0359 (1 HSPs)
scaffold0359 (19-86)||(5571-5638)
[»] chr6 (20 HSPs)
chr6 (19-87)||(19624142-19624210)
chr6 (17-87)||(29918177-29918247)
chr6 (29-86)||(24117002-24117059)
chr6 (29-80)||(13435705-13435756)
chr6 (33-80)||(19086325-19086372)
chr6 (29-87)||(12715337-12715395)
chr6 (19-80)||(9718006-9718067)
chr6 (19-80)||(13602335-13602396)
chr6 (19-87)||(19688929-19688995)
chr6 (19-80)||(23284727-23284788)
chr6 (19-87)||(15302363-15302431)
chr6 (19-77)||(32544428-32544486)
chr6 (19-72)||(14100373-14100426)
chr6 (19-80)||(15531549-15531610)
chr6 (19-80)||(25597642-25597703)
chr6 (32-80)||(20112624-20112672)
chr6 (19-59)||(21625263-21625303)
chr6 (19-78)||(34451595-34451654)
chr6 (19-77)||(26972156-26972214)
chr6 (32-80)||(18435732-18435780)
[»] scaffold0485 (1 HSPs)
scaffold0485 (38-87)||(9286-9335)
[»] scaffold0026 (3 HSPs)
scaffold0026 (19-87)||(8089-8157)
scaffold0026 (19-86)||(60179-60246)
scaffold0026 (43-87)||(115708-115752)
[»] scaffold0334 (1 HSPs)
scaffold0334 (21-84)||(9960-10023)
[»] scaffold1434 (1 HSPs)
scaffold1434 (29-87)||(666-724)
[»] scaffold0479 (1 HSPs)
scaffold0479 (29-87)||(10142-10200)
[»] scaffold0023 (1 HSPs)
scaffold0023 (21-87)||(103737-103803)
[»] scaffold0227 (1 HSPs)
scaffold0227 (19-80)||(22839-22900)
[»] scaffold0161 (1 HSPs)
scaffold0161 (29-77)||(9997-10045)
[»] scaffold0261 (1 HSPs)
scaffold0261 (29-80)||(5826-5877)
[»] scaffold0035 (1 HSPs)
scaffold0035 (19-86)||(19353-19420)
[»] scaffold0146 (1 HSPs)
scaffold0146 (29-87)||(15290-15348)
[»] scaffold0004 (2 HSPs)
scaffold0004 (18-80)||(220399-220461)
scaffold0004 (29-80)||(377446-377497)
[»] scaffold0116 (1 HSPs)
scaffold0116 (19-80)||(20858-20919)
[»] scaffold0083 (1 HSPs)
scaffold0083 (19-80)||(25862-25923)
[»] scaffold0337 (1 HSPs)
scaffold0337 (19-87)||(14811-14879)
[»] scaffold0120 (2 HSPs)
scaffold0120 (29-80)||(36662-36713)
scaffold0120 (29-80)||(42292-42343)
[»] scaffold0005 (2 HSPs)
scaffold0005 (29-87)||(212528-212586)
scaffold0005 (19-80)||(6085-6146)
[»] scaffold0861 (1 HSPs)
scaffold0861 (19-80)||(4834-4895)
[»] scaffold0771 (1 HSPs)
scaffold0771 (19-80)||(638-699)
[»] scaffold0251 (1 HSPs)
scaffold0251 (19-80)||(7866-7927)
[»] scaffold0084 (2 HSPs)
scaffold0084 (19-80)||(49495-49556)
scaffold0084 (29-80)||(32658-32709)
[»] scaffold0022 (2 HSPs)
scaffold0022 (19-80)||(39588-39649)
scaffold0022 (19-80)||(137648-137709)
[»] scaffold0065 (1 HSPs)
scaffold0065 (19-87)||(1853-1921)
[»] scaffold0193 (1 HSPs)
scaffold0193 (29-72)||(15968-16011)
[»] scaffold0066 (1 HSPs)
scaffold0066 (38-80)||(60756-60798)
[»] scaffold0047 (2 HSPs)
scaffold0047 (20-86)||(10066-10132)
scaffold0047 (19-80)||(30387-30448)
[»] scaffold0290 (1 HSPs)
scaffold0290 (19-80)||(18508-18569)
[»] scaffold0426 (1 HSPs)
scaffold0426 (48-87)||(13818-13857)
[»] scaffold0411 (1 HSPs)
scaffold0411 (19-78)||(12372-12431)
[»] scaffold0003 (1 HSPs)
scaffold0003 (23-77)||(89947-89999)
[»] scaffold0395 (1 HSPs)
scaffold0395 (38-80)||(13420-13461)
[»] scaffold0439 (1 HSPs)
scaffold0439 (44-77)||(6632-6665)
[»] scaffold0414 (1 HSPs)
scaffold0414 (44-77)||(7048-7081)
[»] scaffold0247 (1 HSPs)
scaffold0247 (44-77)||(23455-23488)
[»] scaffold0243 (1 HSPs)
scaffold0243 (19-60)||(4900-4941)
[»] scaffold0217 (1 HSPs)
scaffold0217 (44-77)||(9745-9778)
[»] scaffold0056 (1 HSPs)
scaffold0056 (44-77)||(25566-25599)
[»] scaffold0011 (2 HSPs)
scaffold0011 (44-77)||(65321-65354)
scaffold0011 (44-77)||(144366-144399)


Alignment Details
Target: chr2 (Bit Score: 170; Significance: 3e-91; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 66 - 263
Target Start/End: Original strand, 7609195 - 7609392
Alignment:
Q  66 gcttctggtgatcttgcttctggaaggttatcttttgggttgagatgctggttgttgttcgatgaatatatgttggcaggatagaagggttgtcatgttg 165  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7609195 gcttctgatgaacttgcttctggaaggttatcttttgggttgagatgctggttgttgttcgatgaatatatgttggcaggatagaagggttgtcatgttg 7609294  T
Q  166 tttgtatatttcaaaagttttgggatggtcgtttctttttctcttaagttgttattgtttgatgattgtagagagattttcatccatgtttagttcct 263  Q
     ||||||||||  ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  7609295 attgtatattttgaaagttttgggatggtcctttctttttctcttaagttgtttttgtttgatgattgtagagagattttcatccatgtttagttcct 7609392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 7609119 - 7609187
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    |||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  7609119 tgaacagcccttgaagctttaagtcttgcatctcctgatgaactttagcttctggtgatcttgcttctg 7609187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 10009692 - 10009624
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  10009692 tgaacagcccttgaagctttaagtcttgcatctcctgatgaacttcagcttctggtgatctttcttctg 10009624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 19540573 - 19540641
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    ||||||||  |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  19540573 tgaacaacatttgaagctttaagtcttgcatctcatgatgaacttcagcttctggtgatcttgcttctg 19540641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 25829291 - 25829359
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    |||||| || |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  25829291 tgaacatcctttgaagctctaagtcttgcatctcctgatgaactttagcttctggtgatcttgcttctg 25829359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 21537191 - 21537130
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||| ||||| ||||||||    
T  21537191 tgaacaacctttgaagctttaagtcttgcatctcctgatgaacttcatcttctagtgatctt 21537130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 24576193 - 24576258
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgctt 84  Q
    ||||||||| |||||||| ||||| ||||||||||| |||||||| ||||||||||||||||||||    
T  24576193 tgaacaacctttgaagctttaagtattgcatctcctaatgaactttagcttctggtgatcttgctt 24576258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 25037202 - 25037141
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    ||||||||| |||||||| ||||||||||||||||||||||||| || ||||||||||||||    
T  25037202 tgaacaacctttgaagctttaagtcttgcatctcctgatgaactacaacttctggtgatctt 25037141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 25041309 - 25041248
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    ||||||||| |||||||| ||||||||||||||||||||||||| || ||||||||||||||    
T  25041309 tgaacaacctttgaagctttaagtcttgcatctcctgatgaactacaacttctggtgatctt 25041248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 24377268 - 24377319
Alignment:
Q  29 ttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  24377268 ttgaagctttaagtcttgcatctcttgatgaacttcagcttctggtgatctt 24377319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 87
Target Start/End: Original strand, 40782642 - 40782696
Alignment:
Q  33 agctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    |||| ||||||||||||||||||||||| || |||||||||||||||||||||||    
T  40782642 agctctaagtcttgcatctcctgatgaaatttagcttctggtgatcttgcttctg 40782696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 32 - 81
Target Start/End: Complemental strand, 20568680 - 20568631
Alignment:
Q  32 aagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttg 81  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  20568680 aagctttaagtcttgcatctcctgatgaactacagcttctggtgatcttg 20568631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 22188045 - 22187984
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    |||||| || |||||||| |||||||||||| ||||||||||||||| ||||||||||||||    
T  22188045 tgaacagcctttgaagctttaagtcttgcatgtcctgatgaacttcaacttctggtgatctt 22187984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 23595513 - 23595445
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    ||||||||| |||||||| ||| |||| ||||| ||||||| |||||||||||||||| ||||||||||    
T  23595513 tgaacaacctttgaagctttaattctttcatcttctgatgatcttcagcttctggtgaacttgcttctg 23595445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 24850598 - 24850547
Alignment:
Q  29 ttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    |||||||| ||||||||||||||||||||| |||||||| ||||||||||||    
T  24850598 ttgaagctttaagtcttgcatctcctgatgtacttcagcatctggtgatctt 24850547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 9015313 - 9015259
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctgg 73  Q
    ||||||||| |||||||| |||||||||||||||||||||||||| || ||||||    
T  9015313 tgaacaacctttgaagctttaagtcttgcatctcctgatgaactttagtttctgg 9015259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 28140562 - 28140509
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctg 72  Q
    ||||||||| |||||| | |||||||||||||||| ||||||||||||||||||    
T  28140562 tgaacaacctttgaagttttaagtcttgcatctcccgatgaacttcagcttctg 28140509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 22260563 - 22260631
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    ||||||||  |||| ||| |||||||||||||||||||||| ||| | |||||||||||||| ||||||    
T  22260563 tgaacaacttttgacgctttaagtcttgcatctcctgatgagctttaacttctggtgatcttccttctg 22260631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 205 - 252
Target Start/End: Original strand, 28559603 - 28559650
Alignment:
Q  205 tctcttaagttgttattgtttgatgattgtagagagattttcatccat 252  Q
    ||||||||||||||||| |||||||||||||||| ||||| |||||||    
T  28559603 tctcttaagttgttattttttgatgattgtagagggatttccatccat 28559650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 23235164 - 23235222
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgat 77  Q
    |||||| || |||||||| ||||||||||||||| |||||||||  |||||||||||||    
T  23235164 tgaacagcctttgaagctttaagtcttgcatctcatgatgaactagagcttctggtgat 23235222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 30667146 - 30667199
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctg 72  Q
    ||||||||| |||||||| ||| ||||||||||||||||||||| || ||||||    
T  30667146 tgaacaacctttgaagctttaattcttgcatctcctgatgaactacaacttctg 30667199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 23184254 - 23184188
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    ||||||||| |||||||| ||| |||| ||||| ||||||| |||||||||||||||| ||||||||||    
T  23184254 tgaacaacctttgaagct-taattctt-catcttctgatgatcttcagcttctggtgaacttgcttctg 23184188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 22454923 - 22454872
Alignment:
Q  29 ttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    |||||||| |||||||  ||||| |||| |||||||||||||||||||||||    
T  22454923 ttgaagctttaagtctctcatcttctgaagaacttcagcttctggtgatctt 22454872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 86
Target Start/End: Complemental strand, 22776218 - 22776176
Alignment:
Q  44 ttgcatctcctgatgaacttcagcttctggtgatcttgcttct 86  Q
    ||||||||||||||||||| ||||||||| ||| |||||||||    
T  22776218 ttgcatctcctgatgaactacagcttctgatgaacttgcttct 22776176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 86
Target Start/End: Complemental strand, 22781596 - 22781554
Alignment:
Q  44 ttgcatctcctgatgaacttcagcttctggtgatcttgcttct 86  Q
    ||||||||||||||||||| ||||||||| ||| |||||||||    
T  22781596 ttgcatctcctgatgaactacagcttctgatgaacttgcttct 22781554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 77
Target Start/End: Complemental strand, 28550848 - 28550815
Alignment:
Q  44 ttgcatctcctgatgaacttcagcttctggtgat 77  Q
    ||||||||||||||||||| ||||||||||||||    
T  28550848 ttgcatctcctgatgaactgcagcttctggtgat 28550815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 77
Target Start/End: Complemental strand, 31327885 - 31327852
Alignment:
Q  44 ttgcatctcctgatgaacttcagcttctggtgat 77  Q
    ||||||||||||||||||| ||||||||||||||    
T  31327885 ttgcatctcctgatgaactgcagcttctggtgat 31327852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 77
Target Start/End: Complemental strand, 31334606 - 31334573
Alignment:
Q  44 ttgcatctcctgatgaacttcagcttctggtgat 77  Q
    ||||||||||||||||||| ||||||||||||||    
T  31334606 ttgcatctcctgatgaactgcagcttctggtgat 31334573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 77
Target Start/End: Complemental strand, 35743922 - 35743889
Alignment:
Q  44 ttgcatctcctgatgaacttcagcttctggtgat 77  Q
    ||||||||||||||||||| ||||||||||||||    
T  35743922 ttgcatctcctgatgaactacagcttctggtgat 35743889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 22317761 - 22317809
Alignment:
Q  29 ttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgat 77  Q
    |||||||| ||||||||||||||| ||||||| |  |||||||||||||    
T  22317761 ttgaagctttaagtcttgcatctcttgatgaaatagagcttctggtgat 22317809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 41121663 - 41121595
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    |||||| || |||||||| ||| |||  || || ||||||| ||||||||||||||||| |||||||||    
T  41121663 tgaacagcctttgaagctttaattctcacagcttctgatgatcttcagcttctggtgatgttgcttctg 41121595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 1823 - 1891
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1823 tgaacaacctttgaagctttaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 1891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 33083012 - 33083080
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33083012 tgaacaacctttgaagctttaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 33083080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 17267628 - 17267696
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    ||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  17267628 tgaacaacctttgaagctttaagtcttgcatctcttgatgaacttcagcttctggtgatcttgcttctg 17267696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 18321155 - 18321094
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  18321155 tgaacaacctttgaagctttaagtcttgcatctcctgatgaacttcagcttctggtgatctt 18321094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 20382390 - 20382322
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    |||||| || |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  20382390 tgaacagcctttgaagctttaagacttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 20382322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 16189141 - 16189206
Alignment:
Q  21 aacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttct 86  Q
    ||||||| |||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  16189141 aacaacctttgaagctttaagtcttgcatctcctaatgaacttcggcttctggtgatcttgcttct 16189206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 16681299 - 16681234
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgctt 84  Q
    |||||| || |||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||    
T  16681299 tgaacagcctttgaagctctaagtcttgcatctcctgatgaactttagcttctagtgatcttgctt 16681234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 22745642 - 22745703
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    ||||||||| |||||||| |||||||||||||||||||||||||  ||||||||||||||||    
T  22745642 tgaacaacctttgaagctttaagtcttgcatctcctgatgaactagagcttctggtgatctt 22745703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 18719156 - 18719224
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    |||||| || |||||||| |||||||||||||| |||| |||||| |||||||||||||||||||||||    
T  18719156 tgaacagcctttgaagctctaagtcttgcatcttctgaagaacttaagcttctggtgatcttgcttctg 18719224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 19943402 - 19943453
Alignment:
Q  29 ttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  19943402 ttgaagctttaagtcttgcatctcctgatgaacttcagcttctagtgatctt 19943453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 17525714 - 17525656
Alignment:
Q  29 ttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    |||||| | ||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  17525714 ttgaagatttaagtcttgcatctcctgatgaactacagtttctggtgatcttgcttctg 17525656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 17441804 - 17441743
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    ||||||||| || ||||| |||||||||||||||||||||||||  ||||||||||||||||    
T  17441804 tgaacaacctttaaagctttaagtcttgcatctcctgatgaactagagcttctggtgatctt 17441743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 23263588 - 23263539
Alignment:
Q  38 taagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  23263588 taagttttgcatctcctgatgaacttcagcttctgatgatcttgcttctg 23263539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 39693690 - 39693751
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    ||||||||| |||||||| |||||||||||||||||||||| || || ||||||||||||||    
T  39693690 tgaacaacctttgaagctttaagtcttgcatctcctgatgagctacaacttctggtgatctt 39693751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 16207471 - 16207522
Alignment:
Q  29 ttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    |||||||| |||||||||||||||||||||||||  ||||||||||||||||    
T  16207471 ttgaagctttaagtcttgcatctcctgatgaactagagcttctggtgatctt 16207522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 17701900 - 17701959
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatc 78  Q
    ||||||||| |||||||| |||||||  ||||| ||||||||||||||||||||||||||    
T  17701900 tgaacaacctttgaagctttaagtctctcatcttctgatgaacttcagcttctggtgatc 17701959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 602717 - 602655
Alignment:
Q  18 atgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    |||||||||| |||||| | |||||||||||| ||||||||||||| ||||||| ||||||||    
T  602717 atgaacaacctttgaagttttaagtcttgcatttcctgatgaactttagcttcttgtgatctt 602655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 21933038 - 21933096
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgat 77  Q
    ||||||||| |||||||| ||||||||||||||||||||||| |  |||||||||||||    
T  21933038 tgaacaacctttgaagctttaagtcttgcatctcctgatgaaatagagcttctggtgat 21933096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 18121105 - 18121044
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    |||||| || ||||| || |||||||||||||||||||||||||  ||||||||||||||||    
T  18121105 tgaacagcctttgaaactttaagtcttgcatctcctgatgaactagagcttctggtgatctt 18121044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 24646493 - 24646554
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    ||||||||| |||||||| ||| ||||||||||| |||||||||  ||||||||||||||||    
T  24646493 tgaacaacctttgaagctttaactcttgcatctcttgatgaactagagcttctggtgatctt 24646554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 18679970 - 18680038
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    ||||| ||| |||||||| |||||||||||||| |||||||| |  ||||||| |||||||||||||||    
T  18679970 tgaactacctttgaagctctaagtcttgcatcttctgatgaaatgaagcttctagtgatcttgcttctg 18680038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 19707660 - 19707727
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttct 86  Q
    |||||| || |||||||| ||| |||| ||||| ||||||| ||||||||||||| ||||||||||||    
T  19707660 tgaacagcctttgaagctttaattctttcatcttctgatgatcttcagcttctggcgatcttgcttct 19707727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 19156351 - 19156412
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    |||||| || |||||||| ||| ||||||||||| ||||||||| || ||||||||||||||    
T  19156351 tgaacagcctttgaagctttaattcttgcatctcttgatgaactacaacttctggtgatctt 19156412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 23185222 - 23185166
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgat 77  Q
    ||||||||| |||||||| || ||  |||||||||||||||||| ||||||||||||||    
T  23185222 tgaacaacctttgaagctttatgt--tgcatctcctgatgaactgcagcttctggtgat 23185166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 80
Target Start/End: Complemental strand, 12757740 - 12757698
Alignment:
Q  38 taagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    |||||||||||||||||||||||||  |||| |||||||||||    
T  12757740 taagtcttgcatctcctgatgaactagagctactggtgatctt 12757698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 77
Target Start/End: Original strand, 6407894 - 6407927
Alignment:
Q  44 ttgcatctcctgatgaacttcagcttctggtgat 77  Q
    ||||||||||||||||||| ||||||||||||||    
T  6407894 ttgcatctcctgatgaactgcagcttctggtgat 6407927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 77
Target Start/End: Complemental strand, 15336061 - 15336028
Alignment:
Q  44 ttgcatctcctgatgaacttcagcttctggtgat 77  Q
    ||||||||||||||||||| ||||||||||||||    
T  15336061 ttgcatctcctgatgaactacagcttctggtgat 15336028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 77
Target Start/End: Complemental strand, 15425126 - 15425093
Alignment:
Q  44 ttgcatctcctgatgaacttcagcttctggtgat 77  Q
    ||||||||||||||||||| ||||||||||||||    
T  15425126 ttgcatctcctgatgaactacagcttctggtgat 15425093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 77
Target Start/End: Complemental strand, 15516430 - 15516397
Alignment:
Q  44 ttgcatctcctgatgaacttcagcttctggtgat 77  Q
    ||||||||||||||||||| ||||||||||||||    
T  15516430 ttgcatctcctgatgaactacagcttctggtgat 15516397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 23412952 - 23412884
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23412952 tgaacaacctttgaagctttaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 23412884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 6512409 - 6512341
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    ||||||||| |||||||| ||||||||||||||||||||||||| || ||||| |||||||||||||||    
T  6512409 tgaacaacctttgaagctttaagtcttgcatctcctgatgaactacaacttctagtgatcttgcttctg 6512341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 7745671 - 7745603
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    ||||||||| |||||||| |||||||| |||||||||||| |||||||||||| |||||||||||||||    
T  7745671 tgaacaacctttgaagctttaagtcttacatctcctgatgtacttcagcttcttgtgatcttgcttctg 7745603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 19536278 - 19536210
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||| |||||| | |||||||||||||    
T  19536278 tgaacagcccttgaagctttaagtcttgcatctcctgatgaacttctgcttcttgcgatcttgcttctg 19536210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 21072218 - 21072158
Alignment:
Q  20 gaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    |||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  21072218 gaacaaccttttaagctttaagtcttgcatctcctgatgaacttcagcttctggtgatctt 21072158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 21910725 - 21910783
Alignment:
Q  29 ttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    |||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  21910725 ttgacgctttaagtcttgcatctcctgatgaactttagcttctggtgatcttgcttctg 21910783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 89400 - 89332
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    ||||||||  |||||||| ||||| ||||||||||||||||||| || |||||||||||||||||||||    
T  89400 tgaacaacttttgaagctttaagttttgcatctcctgatgaactacaacttctggtgatcttgcttctg 89332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 17815127 - 17815195
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    |||||| || |||||||| ||||||||||||||| ||||||| || |||||||||||||||||||||||    
T  17815127 tgaacagcctttgaagctttaagtcttgcatctcttgatgaaatttagcttctggtgatcttgcttctg 17815195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 21198983 - 21198915
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    ||||||||| |||||||| |||||||  ||||| |||||||||||||||| |||||||| |||||||||    
T  21198983 tgaacaacctttgaagctttaagtctctcatcttctgatgaacttcagctcctggtgatattgcttctg 21198915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 20551064 - 20551107
Alignment:
Q  29 ttgaagctgtaagtcttgcatctcctgatgaacttcagcttctg 72  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  20551064 ttgaagctttaagtcttgcatctcctgatgaacttcagcttctg 20551107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 9398724 - 9398661
Alignment:
Q  18 atgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttg 81  Q
    |||||||||| ||||| || |||||||  ||||| ||||||||||||| |||||||||||||||    
T  9398724 atgaacaacctttgaacctttaagtctctcatcttctgatgaacttcaacttctggtgatcttg 9398661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 13545498 - 13545455
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaact 62  Q
    ||||||||| |||||||| |||||||||||||||||||||||||    
T  13545498 tgaacaacctttgaagctttaagtcttgcatctcctgatgaact 13545455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 41566402 - 41566351
Alignment:
Q  29 ttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    |||||||| ||||||||||||||||||||||||| || |||||| |||||||    
T  41566402 ttgaagctttaagtcttgcatctcctgatgaactacaacttctgatgatctt 41566351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 26784513 - 26784574
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    |||||| || || ||||| ||| |||||||||||||| |||||| |||||||||||||||||    
T  26784513 tgaacagcctttaaagctttaaatcttgcatctcctgctgaactacagcttctggtgatctt 26784574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 86
Target Start/End: Original strand, 31118060 - 31118102
Alignment:
Q  44 ttgcatctcctgatgaacttcagcttctggtgatcttgcttct 86  Q
    ||||||||||||||||||| ||||||||| ||| |||||||||    
T  31118060 ttgcatctcctgatgaactgcagcttctgatgaacttgcttct 31118102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 642686 - 642625
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    ||||||||| |||||||| |||||||  ||||| |||||||||| ||  |||||||||||||    
T  642686 tgaacaacctttgaagctttaagtctctcatcttctgatgaactgcaatttctggtgatctt 642625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 77
Target Start/End: Complemental strand, 3245397 - 3245364
Alignment:
Q  44 ttgcatctcctgatgaacttcagcttctggtgat 77  Q
    ||||||||||||||||||| ||||||||||||||    
T  3245397 ttgcatctcctgatgaactgcagcttctggtgat 3245364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 77
Target Start/End: Original strand, 5430066 - 5430099
Alignment:
Q  44 ttgcatctcctgatgaacttcagcttctggtgat 77  Q
    ||||||||||||||||||| ||||||||||||||    
T  5430066 ttgcatctcctgatgaactgcagcttctggtgat 5430099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 77
Target Start/End: Original strand, 9089141 - 9089174
Alignment:
Q  44 ttgcatctcctgatgaacttcagcttctggtgat 77  Q
    ||||||||||||||||||| ||||||||||||||    
T  9089141 ttgcatctcctgatgaactgcagcttctggtgat 9089174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 77
Target Start/End: Original strand, 11994070 - 11994103
Alignment:
Q  44 ttgcatctcctgatgaacttcagcttctggtgat 77  Q
    ||||||||||||||||||| ||||||||||||||    
T  11994070 ttgcatctcctgatgaactacagcttctggtgat 11994103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 77
Target Start/End: Complemental strand, 30115831 - 30115798
Alignment:
Q  44 ttgcatctcctgatgaacttcagcttctggtgat 77  Q
    ||||||||||||||||||| ||||||||||||||    
T  30115831 ttgcatctcctgatgaactgcagcttctggtgat 30115798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 77
Target Start/End: Original strand, 42243863 - 42243896
Alignment:
Q  44 ttgcatctcctgatgaacttcagcttctggtgat 77  Q
    ||||||||||||||||||| ||||||||||||||    
T  42243863 ttgcatctcctgatgaactacagcttctggtgat 42243896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 27377 - 27309
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  27377 tgaacaacctttgaagctttaagtcttgcatctcctgatgaacttcagcatctggtgatcttgcttctg 27309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 24788300 - 24788368
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    ||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  24788300 tgaacaacctttgaagctttaagtcttgcatctcctaatgaacttcagcttctggtgatcttgcttctg 24788368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 16316556 - 16316488
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    ||||||||| |||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  16316556 tgaacaacctttgaagctttaagtcttgcatcccctgatgaacttcaacttctggtgatcttgcttctg 16316488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 21283372 - 21283304
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    ||||||||| |||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  21283372 tgaacaacctttgaagctttaagtcttgcatatcctgatgaacttcaacttctggtgatcttgcttctg 21283304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 22578020 - 22577952
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    |||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22578020 tgaacaccctttgaagctttaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcctctg 22577952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 11793066 - 11793127
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    ||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  11793066 tgaacaacctttaaagctttaagtcttgcatctcctgatgaacttcagcttctggtgatctt 11793127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 12366747 - 12366679
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    |||||| ||||||||||| ||||| ||||| ||||||||||||||||||||||||||| ||||||||||    
T  12366747 tgaacagcccttgaagctttaagttttgcacctcctgatgaacttcagcttctggtgaccttgcttctg 12366679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 29935358 - 29935290
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    ||||||||| |||||  | |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29935358 tgaacaacctttgaaattttaagtcttgcatctcctgatgaactttagcttctggtgatcttgcttctg 29935290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 4494665 - 4494718
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctg 72  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  4494665 tgaacaacctttgaagctttaagtcttgcatctcctgatgaacttcagcttctg 4494718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 10883172 - 10883111
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    ||||||||| ||||| || ||||||||||||||||||||||||| |||||||||||||||||    
T  10883172 tgaacaacctttgaaactttaagtcttgcatctcctgatgaactacagcttctggtgatctt 10883111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 13260608 - 13260555
Alignment:
Q  33 agctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttct 86  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  13260608 agctttaagtcttgcatctcctgatgaactttagcttctggtgatcttgcttct 13260555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 13302969 - 13303030
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    ||||||||| |||||||| ||||||||||||||||| ||||||| |||||||||||||||||    
T  13302969 tgaacaacctttgaagctttaagtcttgcatctcctaatgaactacagcttctggtgatctt 13303030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 21695560 - 21695621
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    ||||||||  |||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  21695560 tgaacaacttttgaagctttaagtcttgcatctcttgatgaacttcagcttctggtgatctt 21695621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 13692501 - 13692569
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    ||||||||| |||||||| |||||||| ||||| ||||||| ||| |||||||||||||||||||||||    
T  13692501 tgaacaacctttgaagctttaagtcttacatcttctgatgagctttagcttctggtgatcttgcttctg 13692569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 44467234 - 44467285
Alignment:
Q  29 ttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  44467234 ttgaagctttaagtcttgcatctcctgatgaacttcagcttttggtgatctt 44467285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 41842273 - 41842209
Alignment:
Q  18 atgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgct 83  Q
    |||||||||| |||||||| |||||||  ||||| |||||||||||||||||||||||||||||||    
T  41842273 atgaacaacctttgaagct-taagtctctcatcttctgatgaacttcagcttctggtgatcttgct 41842209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 13648898 - 13648956
Alignment:
Q  29 ttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    |||||||| ||||||| |||||||||||||| ||| |||||||| ||||||||||||||    
T  13648898 ttgaagctttaagtctcgcatctcctgatgagctttagcttctgttgatcttgcttctg 13648956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 2913607 - 2913546
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    |||||| || |||||| | ||||||||||||||||||||||||| ||| |||||||||||||    
T  2913607 tgaacagcctttgaagatttaagtcttgcatctcctgatgaactacagtttctggtgatctt 2913546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 15468075 - 15468136
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    |||||| || |||||||| |||||||||||||||||||||||||  |||||||||| |||||    
T  15468075 tgaacaccctttgaagctttaagtcttgcatctcctgatgaactagagcttctggtaatctt 15468136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 30945355 - 30945289
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    ||||||||| |||||||| |||||  |||||||||||||||||| ||||||||| ||| ||||||||||    
T  30945355 tgaacaacctttgaagctttaagt--tgcatctcctgatgaactgcagcttctgatgaacttgcttctg 30945289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 13137889 - 13137833
Alignment:
Q  24 aacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    |||| |||||||| ||||||||||||||||| |||||||  ||||||||||||||||    
T  13137889 aacctttgaagctttaagtcttgcatctccttatgaactagagcttctggtgatctt 13137833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 21692456 - 21692504
Alignment:
Q  29 ttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgat 77  Q
    |||||||| ||||||||||||||||| ||||||||||||||||| ||||    
T  21692456 ttgaagctttaagtcttgcatctcctaatgaacttcagcttctgatgat 21692504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 23279948 - 23279900
Alignment:
Q  29 ttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgat 77  Q
    |||||||| ||||||||||||||||||||||||| || |||||||||||    
T  23279948 ttgaagctttaagtcttgcatctcctgatgaactacaacttctggtgat 23279900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 331806 - 331864
Alignment:
Q  21 aacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    ||||||| |||||||| ||||||  ||||||||||||| |||||||||||||||||||||    
T  331806 aacaacctttgaagctttaagtcc-gcatctcctgatggacttcagcttctggtgatctt 331864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 30026074 - 30026125
Alignment:
Q  29 ttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    |||||||| ||||||||||||||| |||||||||  ||||||||||||||||    
T  30026074 ttgaagctttaagtcttgcatctcttgatgaactagagcttctggtgatctt 30026125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 9069721 - 9069779
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgat 77  Q
    ||||||||| |||||||| ||||| ||||||||||||||||| |  |||||||||||||    
T  9069721 tgaacaacctttgaagctttaagttttgcatctcctgatgaaatagagcttctggtgat 9069779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 15088679 - 15088740
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    |||||| || |||||||| || |||||||||||||||||||| |  ||||||||||||||||    
T  15088679 tgaacagcctttgaagctttacgtcttgcatctcctgatgaattagagcttctggtgatctt 15088740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 28409198 - 28409255
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtga 76  Q
    ||||||||| |||||||  || |||||||||||| |||||||||| ||||||||||||    
T  28409198 tgaacaacctttgaagccttatgtcttgcatctcttgatgaactttagcttctggtga 28409255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 30944322 - 30944256
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    ||||||||| |||||||| |||||  |||||||||||||||||| ||||||||| ||| | ||||||||    
T  30944322 tgaacaacctttgaagctttaagt--tgcatctcctgatgaactgcagcttctgatgaacgtgcttctg 30944256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 33691701 - 33691653
Alignment:
Q  29 ttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgat 77  Q
    |||||||| || ||||||||||||||||||||||  |||||||||||||    
T  33691701 ttgaagctttatgtcttgcatctcctgatgaactagagcttctggtgat 33691653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 14193243 - 14193294
Alignment:
Q  29 ttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    |||||||| ||||||||||||||| |||||||||  ||||| ||||||||||    
T  14193243 ttgaagctttaagtcttgcatctcttgatgaactagagcttatggtgatctt 14193294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 28622355 - 28622299
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgat 77  Q
    ||||||||  |||||||| |||||  |||||||||||||||||| ||||||||||||||    
T  28622355 tgaacaacttttgaagctttaagt--tgcatctcctgatgaactgcagcttctggtgat 28622299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 48236901 - 48236845
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgat 77  Q
    ||||||||  |||||||| |||||  |||||||||||||||||| ||||||||||||||    
T  48236901 tgaacaacttttgaagctttaagt--tgcatctcctgatgaactgcagcttctggtgat 48236845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 77
Target Start/End: Original strand, 8183111 - 8183144
Alignment:
Q  44 ttgcatctcctgatgaacttcagcttctggtgat 77  Q
    ||||||||||||||||||| ||||||||||||||    
T  8183111 ttgcatctcctgatgaactgcagcttctggtgat 8183144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 77
Target Start/End: Complemental strand, 9709778 - 9709745
Alignment:
Q  44 ttgcatctcctgatgaacttcagcttctggtgat 77  Q
    ||||||||||||||||||| ||||||||||||||    
T  9709778 ttgcatctcctgatgaactgcagcttctggtgat 9709745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 11319564 - 11319625
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    |||||| || ||||||||  |||||||||||||| |||||| || || ||||||||||||||    
T  11319564 tgaacatcctttgaagcttgaagtcttgcatctcttgatgacctacaacttctggtgatctt 11319625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 32264715 - 32264669
Alignment:
Q  29 ttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgat 77  Q
    |||||||| ||||||  ||||||||||||||||| ||||||||||||||    
T  32264715 ttgaagctttaagtc--gcatctcctgatgaactgcagcttctggtgat 32264669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 77
Target Start/End: Original strand, 33605868 - 33605901
Alignment:
Q  44 ttgcatctcctgatgaacttcagcttctggtgat 77  Q
    ||||||||||||||||||| ||||||||||||||    
T  33605868 ttgcatctcctgatgaactgcagcttctggtgat 33605901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 37435489 - 37435421
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  37435489 tgaacaacctttgaagctttaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcctctg 37435421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 16632597 - 16632665
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    ||||||||| |||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  16632597 tgaacaacctttgaagctttaagtcttgcatctcctgatgaactttagcttctagtgatcttgcttctg 16632665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 56034741 - 56034799
Alignment:
Q  29 ttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  56034741 ttgaagctttaagtcttgcatcttctgatgaacttcagcttctggtgatcttgcttctg 56034799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 23123588 - 23123649
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    ||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  23123588 tgaacaatctttgaagctttaagtcttgcatctcctgatgaacttcagcttctggtgatctt 23123649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 55380457 - 55380515
Alignment:
Q  29 ttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    |||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  55380457 ttgaagctttaagtcttgcatctcctaatgaacttcagcttctgatgatcttgcttctg 55380515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 45833551 - 45833612
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    ||||||||| |||||||| |||||||||||||||||||||||||  ||||||||||||||||    
T  45833551 tgaacaacctttgaagctttaagtcttgcatctcctgatgaactagagcttctggtgatctt 45833612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 19884856 - 19884916
Alignment:
Q  17 catgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgat 77  Q
    |||||||| || |||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  19884856 catgaacatcctttgaagctttaagtcttgcatctcctgatgaactacagcttctggtgat 19884916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 23750687 - 23750738
Alignment:
Q  29 ttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  23750687 ttgaagctttaagtcttgcatctcctgatgaacttcagcttctggttatctt 23750738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 10073089 - 10073146
Alignment:
Q  17 catgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggt 74  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||| | |||||||||    
T  10073089 catgaacaacctttgaagctttaagtcttgcatctcctgatgaactactgcttctggt 10073146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 12811132 - 12811071
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    ||||||||| |||||||| ||||||||||||||||| |||||||  ||||||||||||||||    
T  12811132 tgaacaacctttgaagctttaagtcttgcatctcctaatgaactagagcttctggtgatctt 12811071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 19621015 - 19620962
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctg 72  Q
    ||||||||| |||||||| ||| |||||||||||||||||||||||||||||||    
T  19621015 tgaacaacctttgaagctttaactcttgcatctcctgatgaacttcagcttctg 19620962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 14604850 - 14604792
Alignment:
Q  29 ttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    |||||||| ||||||||| ||||||||||||| || |||||||| ||||||||||||||    
T  14604850 ttgaagctttaagtcttggatctcctgatgaagtttagcttctgatgatcttgcttctg 14604792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 19911834 - 19911773
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    ||||||||| || ||||| ||||||||||||||||||||||||| || |||||| |||||||    
T  19911834 tgaacaacctttaaagctttaagtcttgcatctcctgatgaactacaacttctgatgatctt 19911773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 6641840 - 6641908
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    ||||||||| |||||||| ||| |||  ||||| |||||||| |||||||||||||||| |||||||||    
T  6641840 tgaacaacctttgaagctttaaatctctcatcttctgatgaaattcagcttctggtgatattgcttctg 6641908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 14904300 - 14904249
Alignment:
Q  29 ttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    |||||||| || |||||||||||||||||||||| || ||||||||||||||    
T  14904300 ttgaagctttaggtcttgcatctcctgatgaactacaacttctggtgatctt 14904249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 3395747 - 3395808
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    ||||||||  |||||| | |||||||||||||||||||||||||  ||||||| ||||||||    
T  3395747 tgaacaacttttgaagatttaagtcttgcatctcctgatgaactatagcttctagtgatctt 3395808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 14833553 - 14833614
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    |||||| || |||||||| ||||||||||||||||||||||| | || ||||||| ||||||    
T  14833553 tgaacatcctttgaagctttaagtcttgcatctcctgatgaattacaacttctggagatctt 14833614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 29680498 - 29680437
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    ||||||||| ||| |||| |||||||||||||||||| | ||||  ||||||||||||||||    
T  29680498 tgaacaacctttggagctttaagtcttgcatctcctggtaaactagagcttctggtgatctt 29680437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 40846266 - 40846317
Alignment:
Q  29 ttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    |||||||| |||||||  ||||| |||||||||||||||||| |||||||||    
T  40846266 ttgaagctttaagtctctcatcttctgatgaacttcagcttccggtgatctt 40846317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 77
Target Start/End: Original strand, 10693031 - 10693064
Alignment:
Q  44 ttgcatctcctgatgaacttcagcttctggtgat 77  Q
    ||||||||||||||||||| ||||||||||||||    
T  10693031 ttgcatctcctgatgaactacagcttctggtgat 10693064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 77
Target Start/End: Original strand, 10906797 - 10906830
Alignment:
Q  44 ttgcatctcctgatgaacttcagcttctggtgat 77  Q
    ||||||||||||||||||| ||||||||||||||    
T  10906797 ttgcatctcctgatgaactacagcttctggtgat 10906830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 77
Target Start/End: Complemental strand, 13576045 - 13576012
Alignment:
Q  44 ttgcatctcctgatgaacttcagcttctggtgat 77  Q
    ||||||||||||||||||| ||||||||||||||    
T  13576045 ttgcatctcctgatgaactgcagcttctggtgat 13576012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 22089745 - 22089805
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    ||||||||| |||||||| ||| |||| ||||| ||||||| ||| ||||||||||||||||    
T  22089745 tgaacaacctttgaagct-taattctttcatcttctgatgatctttagcttctggtgatctt 22089805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 37985566 - 37985525
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaa 60  Q
    ||||||||| |||||||| ||||||||||||||| |||||||    
T  37985566 tgaacaacctttgaagctttaagtcttgcatctcatgatgaa 37985525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 77
Target Start/End: Original strand, 54680108 - 54680141
Alignment:
Q  44 ttgcatctcctgatgaacttcagcttctggtgat 77  Q
    ||||||||||||||||||| ||||||||||||||    
T  54680108 ttgcatctcctgatgaactgcagcttctggtgat 54680141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 3105351 - 3105311
Alignment:
Q  44 ttgcatctcctgatgaacttcagcttctggtgatcttgctt 84  Q
    ||||||||||||||||||| ||||||||| ||| |||||||    
T  3105351 ttgcatctcctgatgaactgcagcttctgatgaacttgctt 3105311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 12601258 - 12601326
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    |||||| || |||| ||| |||||||||||||||  ||||| ||| | ||||| |||||||||||||||    
T  12601258 tgaacagcctttgacgctttaagtcttgcatctcgagatgagctttaacttctagtgatcttgcttctg 12601326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 12963082 - 12963014
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    |||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||    
T  12963082 tgaacaacccttgaagctttaagtcttgcatctcctgatgaactacaacttctggtgatcttgcttctg 12963014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 6090898 - 6090955
Alignment:
Q  23 caacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    ||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  6090898 caacctttgaagttttaagtcttgcatctcctgatgaacttcagcttctggtgatctt 6090955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 49642759 - 49642698
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    ||||||||| |||||||| ||||||||||||||||||||||||| || ||||||||||||||    
T  49642759 tgaacaacctttgaagctttaagtcttgcatctcctgatgaactacaacttctggtgatctt 49642698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 52920577 - 52920628
Alignment:
Q  29 ttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  52920577 ttgaaactttaagtcttgcatctcctgatgaacttcagcttctggtgatctt 52920628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 2561350 - 2561408
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgat 77  Q
    ||||||||| |||||||| |||||||||||||||||||||||||  |||||||||||||    
T  2561350 tgaacaacctttgaagctttaagtcttgcatctcctgatgaactagagcttctggtgat 2561408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 17238909 - 17238851
Alignment:
Q  29 ttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    |||||||| ||||||||||||||||| ||| |||||| |||||||||||||||||||||    
T  17238909 ttgaagctttaagtcttgcatctccttatgcacttcatcttctggtgatcttgcttctg 17238851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 49553476 - 49553418
Alignment:
Q  29 ttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    ||||| || ||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  49553476 ttgaaactttaagtcttgcatctcctgatgaacttcggcttctggtgatcttacttctg 49553418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 14393001 - 14392936
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgctt 84  Q
    ||||||||| ||||| || ||||||||| ||||||| |||||||||||||||| ||||||||||||    
T  14393001 tgaacaacctttgaaactttaagtcttgtatctcctaatgaacttcagcttctagtgatcttgctt 14392936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 18121619 - 18121558
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    ||||||||| |||||||| ||| |||||||||||||||||||||  ||||||||||||||||    
T  18121619 tgaacaacctttgaagctttaaatcttgcatctcctgatgaactagagcttctggtgatctt 18121558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 37467495 - 37467563
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    ||||||| | |||||| | ||||| ||||||||||||||||||| | ||||||||||||||||||||||    
T  37467495 tgaacaagctttgaagatttaagttttgcatctcctgatgaactactgcttctggtgatcttgcttctg 37467563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 87
Target Start/End: Complemental strand, 19888928 - 19888873
Alignment:
Q  32 aagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    ||||| ||||||||||||||| |||||||||| ||||||| |||||||||||||||    
T  19888928 aagctttaagtcttgcatctcttgatgaactttagcttctagtgatcttgcttctg 19888873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 86
Target Start/End: Complemental strand, 12726217 - 12726160
Alignment:
Q  29 ttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttct 86  Q
    |||||||| ||||||||| |||||||||||||||||| ||||| ||||||||| ||||    
T  12726217 ttgaagctttaagtcttgaatctcctgatgaacttcaacttcttgtgatcttgtttct 12726160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 13948498 - 13948559
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    |||||| || |||| ||| |||||||||||||||||||||| ||| ||||||||||||||||    
T  13948498 tgaacatcctttgacgctttaagtcttgcatctcctgatgagctttagcttctggtgatctt 13948559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 14969489 - 14969550
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    ||||||||| |||||||| |||||||||||| |||| |||||||  ||||||||||||||||    
T  14969489 tgaacaacctttgaagctttaagtcttgcatatcctcatgaactagagcttctggtgatctt 14969550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 16658615 - 16658554
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    ||||||||| |||||| |  |||||||||||||||||||||||| || ||||||||||||||    
T  16658615 tgaacaacctttgaagtttcaagtcttgcatctcctgatgaactacaacttctggtgatctt 16658554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 20646330 - 20646378
Alignment:
Q  32 aagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    ||||| ||||||||||||||||||||||||| || ||||||||||||||    
T  20646330 aagctttaagtcttgcatctcctgatgaactacaacttctggtgatctt 20646378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 18142739 - 18142681
Alignment:
Q  29 ttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    |||||||| ||| |||||||||||||||||||||  |||||||| ||| ||||||||||    
T  18142739 ttgaagctttaaatcttgcatctcctgatgaactagagcttctgatgaacttgcttctg 18142681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 28582268 - 28582326
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgat 77  Q
    |||||| || |||||||| ||||||||||||||||||||||| |  |||||||||||||    
T  28582268 tgaacagcctttgaagctttaagtcttgcatctcctgatgaaatagagcttctggtgat 28582326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 38177640 - 38177579
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    ||||||||| |||||||| ||||||||||||||||| || ||||  |||||||| |||||||    
T  38177640 tgaacaacctttgaagctttaagtcttgcatctcctaataaactagagcttctgatgatctt 38177579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 15903371 - 15903422
Alignment:
Q  29 ttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    |||||||| |||||||||||||||||||| || | |||||| ||||||||||    
T  15903371 ttgaagctttaagtcttgcatctcctgataaattacagcttttggtgatctt 15903422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 29951435 - 29951374
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    |||| |||| |||||||| |||||||  | ||| ||||||||||||||||||| ||||||||    
T  29951435 tgaaaaacctttgaagctttaagtctctcgtcttctgatgaacttcagcttctagtgatctt 29951374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 30000589 - 30000528
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    |||| |||| |||||||| |||||||  | ||| ||||||||||||||||||| ||||||||    
T  30000589 tgaaaaacctttgaagctttaagtctctcgtcttctgatgaacttcagcttctagtgatctt 30000528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 31303548 - 31303609
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    ||||||||| || ||||| |||||||| ||||||||||  ||||  ||||||||||||||||    
T  31303548 tgaacaacctttaaagctttaagtctttcatctcctgagtaactagagcttctggtgatctt 31303609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 77
Target Start/End: Original strand, 47207892 - 47207925
Alignment:
Q  44 ttgcatctcctgatgaacttcagcttctggtgat 77  Q
    ||||||||||||||||||| ||||||||||||||    
T  47207892 ttgcatctcctgatgaactgcagcttctggtgat 47207925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 77
Target Start/End: Complemental strand, 49666389 - 49666356
Alignment:
Q  44 ttgcatctcctgatgaacttcagcttctggtgat 77  Q
    ||||||||||||||||||| ||||||||||||||    
T  49666389 ttgcatctcctgatgaactgcagcttctggtgat 49666356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 12284585 - 12284653
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    ||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  12284585 tgaacaacctttgaagctctaagtcttgcatcttctgatgaacttcagcttctggtgatcttgcttctg 12284653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 33256269 - 33256201
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    ||||||||| |||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  33256269 tgaacaacctttgaagctttaagtcttgcatctcctgttgaactttagcttctggtgatcttgcttctg 33256201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 33276441 - 33276373
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    ||||||||| |||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  33276441 tgaacaacctttgaagctttaagtcttgcatctcctggtgaactttagcttctggtgatcttgcttctg 33276373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 22154019 - 22154080
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    |||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  22154019 tgaacagcctttgaagctttaagtcttgcatctcctgatgaacttcagcttctggtgatctt 22154080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 1578029 - 1578097
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    ||||||||| |||||||| |||||||||||||||||||| ||||| ||||||| |||||||||||||||    
T  1578029 tgaacaacctttgaagctctaagtcttgcatctcctgataaactttagcttcttgtgatcttgcttctg 1578097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 19717686 - 19717754
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    ||||||||| |||||||| ||||||||||||||||  |||||||| |||||||||||||||||||||||    
T  19717686 tgaacaacctttgaagctttaagtcttgcatctccatatgaactttagcttctggtgatcttgcttctg 19717754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 48704366 - 48704434
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    ||||||||| |||||||| |||||||||||||| ||||||||||| ||||||||||||||| |||||||    
T  48704366 tgaacaacctttgaagctttaagtcttgcatcttctgatgaactttagcttctggtgatctagcttctg 48704434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 10757594 - 10757652
Alignment:
Q  29 ttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    |||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||    
T  10757594 ttgaagctttaagtcttgcatctcctgatgaacttcagcttttgatgatcttgcttctg 10757652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 20954391 - 20954330
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    ||||||||| |||||||| |||||||||||||||||||||||||  ||||||||||||||||    
T  20954391 tgaacaacctttgaagctttaagtcttgcatctcctgatgaactagagcttctggtgatctt 20954330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 30893265 - 30893323
Alignment:
Q  29 ttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    ||||| || |||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  30893265 ttgaaactttaagtcttgcatctcctgatgaactttagcttttggtgatcttgcttctg 30893323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 22600100 - 22600039
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    |||||| || |||||||| |||||||||||||||||||||||||  ||||||||||||||||    
T  22600100 tgaacagcctttgaagctttaagtcttgcatctcctgatgaactagagcttctggtgatctt 22600039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 38282728 - 38282789
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    ||||||||| |||||||| |||||||||||||||||||||||||  ||||| ||||||||||    
T  38282728 tgaacaacctttgaagctttaagtcttgcatctcctgatgaactagagcttttggtgatctt 38282789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 28492322 - 28492269
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctg 72  Q
    ||||||||| |||||||| ||||||||||||||||||||||||| || ||||||    
T  28492322 tgaacaacctttgaagctttaagtcttgcatctcctgatgaactacaacttctg 28492269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 32785858 - 32785798
Alignment:
Q  17 catgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgat 77  Q
    ||||||||||| |||||||| ||||||||||||||| ||||||||| || ||||| |||||    
T  32785858 catgaacaacctttgaagctttaagtcttgcatctcatgatgaactacaacttctagtgat 32785798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 7309990 - 7310041
Alignment:
Q  29 ttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    |||||||| |||||||||||||||||||||| ||| ||||| ||||||||||    
T  7309990 ttgaagctttaagtcttgcatctcctgatgagctttagcttatggtgatctt 7310041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 2268690 - 2268748
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgat 77  Q
    ||||||||| |||||||  ||||||||||||||||| |||||||| ||||||| |||||    
T  2268690 tgaacaacctttgaagccttaagtcttgcatctcctaatgaactttagcttctagtgat 2268748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 87
Target Start/End: Original strand, 12284651 - 12284685
Alignment:
Q  53 ctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    |||||||||||||||||||||||||||||||||||    
T  12284651 ctgatgaacttcagcttctggtgatcttgcttctg 12284685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 1900507 - 1900568
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    |||| |||| |||||||| |||||||||||||||||||||||||  | ||||||| ||||||    
T  1900507 tgaataacctttgaagctttaagtcttgcatctcctgatgaactagatcttctggcgatctt 1900568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 26702037 - 26701986
Alignment:
Q  29 ttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    |||||||| |||||||  ||||| ||||||||||| ||||||||||||||||    
T  26702037 ttgaagctttaagtctcccatcttctgatgaactttagcttctggtgatctt 26701986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 77
Target Start/End: Complemental strand, 2327334 - 2327301
Alignment:
Q  44 ttgcatctcctgatgaacttcagcttctggtgat 77  Q
    ||||||||||||||||||| ||||||||||||||    
T  2327334 ttgcatctcctgatgaactgcagcttctggtgat 2327301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 77
Target Start/End: Original strand, 10251161 - 10251194
Alignment:
Q  44 ttgcatctcctgatgaacttcagcttctggtgat 77  Q
    ||||||||||||||||||| ||||||||||||||    
T  10251161 ttgcatctcctgatgaactgcagcttctggtgat 10251194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 77
Target Start/End: Original strand, 21702998 - 21703031
Alignment:
Q  44 ttgcatctcctgatgaacttcagcttctggtgat 77  Q
    ||||||||||||||||||| ||||||||||||||    
T  21702998 ttgcatctcctgatgaactgcagcttctggtgat 21703031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 2267251 - 2267316
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttct 86  Q
    ||||||||| |||||||| || ||  ||||||||||||||||||  |||||||| ||| |||||||||    
T  2267251 tgaacaacctttgaagctttatgt--tgcatctcctgatgaactgtagcttctgatgaacttgcttct 2267316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0359 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0359
Description:

Target: scaffold0359; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 5638 - 5571
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttct 86  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  5638 tgaacaacctttgaagctctaagtcttgcatctcctgatgaacttcagcttcaggtgatcttgcttct 5571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 19624142 - 19624210
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    ||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  19624142 tgaacaacctttgaagctttaagacttgcatctcctgatgaacttcagcttctggtgatcttgtttctg 19624210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 29918177 - 29918247
Alignment:
Q  17 catgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||| ||| ||||||||||    
T  29918177 catgaacaacctttgaagctttaagtcttgcatctcctgatgaactacagcttctgatgaacttgcttctg 29918247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 24117002 - 24117059
Alignment:
Q  29 ttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttct 86  Q
    |||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  24117002 ttgaagctttaagtcttgcatcttctgatgaacttcatcttctggtgatcttgcttct 24117059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 13435705 - 13435756
Alignment:
Q  29 ttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  13435705 ttgaagctttaagtcttgcatctcctgatgaacttcagcttatggtgatctt 13435756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 19086325 - 19086372
Alignment:
Q  33 agctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||    
T  19086325 agctttaagtcttgcatctcctgatgaacttcagcttctggtgatctt 19086372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 12715395 - 12715337
Alignment:
Q  29 ttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    |||||||| ||||||||||||||||||||||||| || ||||| |||||||||||||||    
T  12715395 ttgaagctttaagtcttgcatctcctgatgaactacaacttctagtgatcttgcttctg 12715337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 9718006 - 9718067
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    ||||||||| |||||||| |||||||||||||||||||||||||  ||||||| ||||||||    
T  9718006 tgaacaacctttgaagctttaagtcttgcatctcctgatgaactagagcttctagtgatctt 9718067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 13602335 - 13602396
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    ||||||||| |||||||| |||||||||||||||||||||||||  ||||||| ||||||||    
T  13602335 tgaacaacctttgaagctttaagtcttgcatctcctgatgaactatagcttcttgtgatctt 13602396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 19688929 - 19688995
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    ||||||||| |||||||| ||||||  ||||||||||||||||||||||||||| ||| ||||||||||    
T  19688929 tgaacaacctttgaagctttaagtc--gcatctcctgatgaacttcagcttctgatgaacttgcttctg 19688995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 23284727 - 23284788
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    ||||||||  |||||||| |||||||||||||||||||||||||||||||||| | ||||||    
T  23284727 tgaacaacatttgaagctttaagtcttgcatctcctgatgaacttcagcttctagcgatctt 23284788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 15302363 - 15302431
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    ||||||||| |||| ||| ||||||||||||||||| |||| ||| ||||| |||||||||||||||||    
T  15302363 tgaacaacctttgacgctttaagtcttgcatctcctaatgagctttagcttttggtgatcttgcttctg 15302431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 32544428 - 32544486
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgat 77  Q
    ||||||||| |||||||| |||||||||||||||||||||||||  ||||| |||||||    
T  32544428 tgaacaacctttgaagctttaagtcttgcatctcctgatgaactagagcttatggtgat 32544486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 14100426 - 14100373
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctg 72  Q
    |||||| || ||||| || |||||||||||||||||||||||||||||||||||    
T  14100426 tgaacatcctttgaaactttaagtcttgcatctcctgatgaacttcagcttctg 14100373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 15531610 - 15531549
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    ||||||||| || ||||| |||||||||||||| |||||||||| || ||||||||||||||    
T  15531610 tgaacaacctttcaagctttaagtcttgcatcttctgatgaactacaacttctggtgatctt 15531549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 25597642 - 25597703
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    |||||| || |||||||| |||||||||||| |||||||||||| || ||||||||||||||    
T  25597642 tgaacatcctttgaagctttaagtcttgcatgtcctgatgaactacaacttctggtgatctt 25597703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 20112672 - 20112624
Alignment:
Q  32 aagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    ||||| ||||||||||||||| ||||||||||||||||| |||||||||    
T  20112672 aagctttaagtcttgcatctcttgatgaacttcagcttcaggtgatctt 20112624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 21625263 - 21625303
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatga 59  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  21625263 tgaacaacctttgaagctgtaagtcttgcatctcctgatga 21625303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 34451654 - 34451595
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatc 78  Q
    |||||| || ||||| || |||||||||||||||||||||||||  ||||||||||||||    
T  34451654 tgaacagcctttgaatctttaagtcttgcatctcctgatgaactagagcttctggtgatc 34451595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 26972214 - 26972156
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgat 77  Q
    ||||||||  |||||||| ||||||||||||||||||||||| |  |||||||||||||    
T  26972214 tgaacaacatttgaagctttaagtcttgcatctcctgatgaaatagagcttctggtgat 26972156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 18435732 - 18435780
Alignment:
Q  32 aagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    ||||| |||||||||||||||||||||||||  ||||||| ||||||||    
T  18435732 aagctttaagtcttgcatctcctgatgaactagagcttctagtgatctt 18435780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0485 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0485
Description:

Target: scaffold0485; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 9335 - 9286
Alignment:
Q  38 taagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9335 taagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 9286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 8089 - 8157
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    ||||||||| |||||||| ||||| |||||||||||||||||||| |||||||||| ||||||||||||    
T  8089 tgaacaacctttgaagctttaagttttgcatctcctgatgaactttagcttctggttatcttgcttctg 8157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 60179 - 60246
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttct 86  Q
    |||||| || |||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  60179 tgaacatcctttgaagctttaagtcttgcatcttctgatgaactttagcttctggtgatcttgcttct 60246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 115708 - 115752
Alignment:
Q  43 cttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  115708 cttgcatctcctgatgaacatcagcttctggtgatcttgcttctg 115752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0334 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 9960 - 10023
Alignment:
Q  21 aacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgctt 84  Q
    ||||| |||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||    
T  9960 aacaaaccttgaagctttaaatcttgcatctccagatgaacttcagcttctggtgatcttgctt 10023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1434 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold1434
Description:

Target: scaffold1434; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 724 - 666
Alignment:
Q  29 ttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    |||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  724 ttgaagttttaagtcttgcatctcctgatgaactttagcttctggtgatcttgcttctg 666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 10142 - 10200
Alignment:
Q  29 ttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    |||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  10142 ttgaagctttaagtcttgcatctcctgatgaacttcaacttcttgtgatcttgcttctg 10200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 103737 - 103803
Alignment:
Q  21 aacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    ||||||| || ||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  103737 aacaacctttcaagctttaagtcttgcatctcctgatgaacttcagcttctggtgtccttgcttctg 103803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 22839 - 22900
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    ||||||||| |||||||| ||||||||||||||||||||||||| |||| ||||||||||||    
T  22839 tgaacaacctttgaagctttaagtcttgcatctcctgatgaactacagcctctggtgatctt 22900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 10045 - 9997
Alignment:
Q  29 ttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgat 77  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10045 ttgaagctttaagtcttgcatctcctgatgaacttcagcttctggtgat 9997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0261 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 5877 - 5826
Alignment:
Q  29 ttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  5877 ttgaagctttaagtcttgcatctcctaatgaacttcagcttctggtgatctt 5826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 19420 - 19353
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttct 86  Q
    ||||||||  |||||||| ||||||||||||||||| ||||||| || ||||||||||||||||||||    
T  19420 tgaacaacttttgaagctttaagtcttgcatctcctcatgaactacaacttctggtgatcttgcttct 19353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 15290 - 15348
Alignment:
Q  29 ttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    |||||||| ||||||||||||||||| ||| |||||| |||||||||||||||||||||    
T  15290 ttgaagctttaagtcttgcatctccttatgcacttcatcttctggtgatcttgcttctg 15348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 220399 - 220461
Alignment:
Q  18 atgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    ||||||| || |||||||| |||||||  ||||||||||||||||||||||||||||||||||    
T  220399 atgaacagcctttgaagctttaagtctctcatctcctgatgaacttcagcttctggtgatctt 220461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 377497 - 377446
Alignment:
Q  29 ttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    |||||| | |||||||||||||||||||||||||  | ||||||||||||||    
T  377497 ttgaagttttaagtcttgcatctcctgatgaactataacttctggtgatctt 377446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 20919 - 20858
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    ||||||||| |||||||| ||||||||||||||| |||||||||||| ||| ||||||||||    
T  20919 tgaacaacctttgaagctttaagtcttgcatctcttgatgaacttcaacttttggtgatctt 20858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 25923 - 25862
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    ||||||||| |||| ||| |||||||||||||||||||||| ||| ||||||||||||||||    
T  25923 tgaacaacctttgacgctttaagtcttgcatctcctgatgagctttagcttctggtgatctt 25862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 14811 - 14879
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    ||||||||| |||||||| |||||||||||| |||| ||||  || |||||||||||||||||||||||    
T  14811 tgaacaacctttgaagctttaagtcttgcatttcctaatgatttttagcttctggtgatcttgcttctg 14879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 36713 - 36662
Alignment:
Q  29 ttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    |||||||| ||||||||||||||| |||||||||||||||||| ||||||||    
T  36713 ttgaagctttaagtcttgcatctcttgatgaacttcagcttctagtgatctt 36662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 42292 - 42343
Alignment:
Q  29 ttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    |||||||| ||||||||||||||| |||||||||||||||||| ||||||||    
T  42292 ttgaagctttaagtcttgcatctcttgatgaacttcagcttctagtgatctt 42343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 212528 - 212586
Alignment:
Q  29 ttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    |||||||| ||||||||| ||||||||||||| || |||||||| ||||||||||||||    
T  212528 ttgaagctttaagtcttggatctcctgatgaagtttagcttctgatgatcttgcttctg 212586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 6146 - 6085
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    |||||| || |||||||| ||||||||||||||||||||||| | || ||||||| ||||||    
T  6146 tgaacatcctttgaagctttaagtcttgcatctcctgatgaattacaacttctggagatctt 6085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0861 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0861
Description:

Target: scaffold0861; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 4895 - 4834
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    |||||| || |||||||| |||||||||||||| ||||||||||  ||||||||||||||||    
T  4895 tgaacagcctttgaagctttaagtcttgcatcttctgatgaactagagcttctggtgatctt 4834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0771 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0771
Description:

Target: scaffold0771; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 638 - 699
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    |||||| || |||| ||| |||||||||||||||||||||| ||| ||||||||||||||||    
T  638 tgaacatcctttgacgctttaagtcttgcatctcctgatgagctttagcttctggtgatctt 699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 7866 - 7927
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    |||||| || |||||||| ||||||||||||||||||||||| |  ||||||||||||||||    
T  7866 tgaacagcctttgaagctttaagtcttgcatctcctgatgaaatagagcttctggtgatctt 7927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 49495 - 49556
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    ||||||| | |||||||| |||| |||||||||||||||||||| || ||||||||||||||    
T  49495 tgaacaaactttgaagctttaagacttgcatctcctgatgaactacaacttctggtgatctt 49556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 32658 - 32709
Alignment:
Q  29 ttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    |||||||| ||||||||||||||||||||||||| ||  || ||||||||||    
T  32658 ttgaagctttaagtcttgcatctcctgatgaactacaagttgtggtgatctt 32709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 39588 - 39649
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    |||||| || |||||||| ||| |||||||||||||||||||||  ||||||||||||||||    
T  39588 tgaacagcctttgaagctttaaatcttgcatctcctgatgaactagagcttctggtgatctt 39649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 137648 - 137709
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    |||||| || |||||||| ||| |||||||||||||||||||||  ||||||||||||||||    
T  137648 tgaacagcctttgaagctttaaatcttgcatctcctgatgaactagagcttctggtgatctt 137709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 1853 - 1921
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    ||||||||| |||||||| |||||||||||| |||| ||||  || ||||||| |||||||||||||||    
T  1853 tgaacaacctttgaagctttaagtcttgcatttcctaatgatttttagcttctagtgatcttgcttctg 1921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 15968 - 16011
Alignment:
Q  29 ttgaagctgtaagtcttgcatctcctgatgaacttcagcttctg 72  Q
    |||||||| |||||||||||||||||||||||||| ||||||||    
T  15968 ttgaagctttaagtcttgcatctcctgatgaactttagcttctg 16011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 80
Target Start/End: Complemental strand, 60798 - 60756
Alignment:
Q  38 taagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    |||||||||||||| ||||||||||||||||| ||||||||||    
T  60798 taagtcttgcatcttctgatgaacttcagcttgtggtgatctt 60756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 10066 - 10132
Alignment:
Q  20 gaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatcttgcttct 86  Q
    ||||| || |||||||| ||||| |  ||||| ||||||||||||||||||||||||| ||||||||    
T  10066 gaacagcctttgaagctttaagtttctcatcttctgatgaacttcagcttctggtgatattgcttct 10132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 30387 - 30448
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    |||||| || |||||||| ||||||||||||||||||||||| | || ||||||| ||||||    
T  30387 tgaacatcctttgaagctttaagtcttgcatctcctgatgaattacaacttctggagatctt 30448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 18569 - 18508
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    |||||| || |||||||| ||| |||||  |||||||||||||| |||||||||||||||||    
T  18569 tgaacagcctttgaagctttaaatcttgtgtctcctgatgaactgcagcttctggtgatctt 18508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0426 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0426
Description:

Target: scaffold0426; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 87
Target Start/End: Original strand, 13818 - 13857
Alignment:
Q  48 atctcctgatgaacttcagcttctggtgatcttgcttctg 87  Q
    |||||||||||| ||| |||||||||||||||||||||||    
T  13818 atctcctgatgagctttagcttctggtgatcttgcttctg 13857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0411 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0411
Description:

Target: scaffold0411; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 12372 - 12431
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgatc 78  Q
    |||||| || |||||||| |||||||||  ||||||||||||||  ||||||||||||||    
T  12372 tgaacagcctttgaagctttaagtcttgtgtctcctgatgaactagagcttctggtgatc 12431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 89999 - 89947
Alignment:
Q  23 caacccttgaagctgtaagtcttgcatctcctgatgaacttcagcttctggtgat 77  Q
    ||||| |||||||| |||||  |||||||||||||||||| ||||||||||||||    
T  89999 caacctttgaagctttaagt--tgcatctcctgatgaactgcagcttctggtgat 89947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0395 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0395
Description:

Target: scaffold0395; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 80
Target Start/End: Complemental strand, 13461 - 13420
Alignment:
Q  38 taagtcttgcatctcctgatgaacttcagcttctggtgatctt 80  Q
    ||||||||||||||| |||||||||||||||||||||| ||||    
T  13461 taagtcttgcatctc-tgatgaacttcagcttctggtgttctt 13420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0439 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0439
Description:

Target: scaffold0439; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 77
Target Start/End: Complemental strand, 6665 - 6632
Alignment:
Q  44 ttgcatctcctgatgaacttcagcttctggtgat 77  Q
    ||||||||||||||||||| ||||||||||||||    
T  6665 ttgcatctcctgatgaactacagcttctggtgat 6632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0414 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0414
Description:

Target: scaffold0414; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 77
Target Start/End: Complemental strand, 7081 - 7048
Alignment:
Q  44 ttgcatctcctgatgaacttcagcttctggtgat 77  Q
    ||||||||||||||||||| ||||||||||||||    
T  7081 ttgcatctcctgatgaactacagcttctggtgat 7048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 77
Target Start/End: Complemental strand, 23488 - 23455
Alignment:
Q  44 ttgcatctcctgatgaacttcagcttctggtgat 77  Q
    ||||||||||||||||||| ||||||||||||||    
T  23488 ttgcatctcctgatgaactgcagcttctggtgat 23455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0243 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0243
Description:

Target: scaffold0243; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 4941 - 4900
Alignment:
Q  19 tgaacaacccttgaagctgtaagtcttgcatctcctgatgaa 60  Q
    ||||||||| |||||||| ||||||||||||||| |||||||    
T  4941 tgaacaacctttgaagctttaagtcttgcatctcttgatgaa 4900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 77
Target Start/End: Original strand, 9745 - 9778
Alignment:
Q  44 ttgcatctcctgatgaacttcagcttctggtgat 77  Q
    ||||||||||||||||||| ||||||||||||||    
T  9745 ttgcatctcctgatgaactgcagcttctggtgat 9778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 77
Target Start/End: Complemental strand, 25599 - 25566
Alignment:
Q  44 ttgcatctcctgatgaacttcagcttctggtgat 77  Q
    ||||||||||||||||||| ||||||||||||||    
T  25599 ttgcatctcctgatgaactgcagcttctggtgat 25566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 77
Target Start/End: Complemental strand, 65354 - 65321
Alignment:
Q  44 ttgcatctcctgatgaacttcagcttctggtgat 77  Q
    ||||||||||||||||||| ||||||||||||||    
T  65354 ttgcatctcctgatgaactgcagcttctggtgat 65321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 77
Target Start/End: Complemental strand, 144399 - 144366
Alignment:
Q  44 ttgcatctcctgatgaacttcagcttctggtgat 77  Q
    ||||||||||||||||||| ||||||||||||||    
T  144399 ttgcatctcctgatgaactgcagcttctggtgat 144366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University