View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17053_low_6 (Length: 246)

Name: NF17053_low_6
Description: NF17053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17053_low_6
NF17053_low_6
[»] chr5 (4 HSPs)
chr5 (34-219)||(41900181-41900366)
chr5 (108-221)||(32268817-32268930)
chr5 (33-133)||(32268718-32268818)
chr5 (169-209)||(41886296-41886336)
[»] chr4 (8 HSPs)
chr4 (59-145)||(6007639-6007725)
chr4 (85-150)||(55907434-55907499)
chr4 (52-150)||(548220-548318)
chr4 (161-209)||(1488824-1488872)
chr4 (89-144)||(2525761-2525816)
chr4 (165-210)||(1537250-1537295)
chr4 (84-149)||(2168015-2168080)
chr4 (102-146)||(2625367-2625411)
[»] chr3 (2 HSPs)
chr3 (58-152)||(513426-513520)
chr3 (167-209)||(51120330-51120372)
[»] chr7 (4 HSPs)
chr7 (78-152)||(15091347-15091421)
chr7 (91-150)||(10168806-10168865)
chr7 (91-150)||(10176331-10176390)
chr7 (172-213)||(10616209-10616250)
[»] chr2 (2 HSPs)
chr2 (85-150)||(1036176-1036241)
chr2 (161-209)||(45244526-45244574)
[»] chr8 (2 HSPs)
chr8 (87-150)||(32152208-32152271)
chr8 (164-209)||(17642614-17642659)
[»] chr1 (1 HSPs)
chr1 (82-150)||(33161430-33161498)
[»] chr6 (1 HSPs)
chr6 (82-143)||(6395772-6395833)


Alignment Details
Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 34 - 219
Target Start/End: Complemental strand, 41900366 - 41900181
Alignment:
Q  34 aatctacgaaagagagttggaagaaaagggagggttggatcacagactgtgagagagaatcgaagattgttggagatggagagcaactgtttggagacga 133  Q
    |||||| |||||||||| |||||||||||||| ||| ||||||||| ||| ||||||||||||||| |||||| ||||||||| ||||||||||||||||    
T  41900366 aatctatgaaagagagtaggaagaaaagggagagtttgatcacagattgtaagagagaatcgaagagtgttggtgatggagagaaactgtttggagacga 41900267  T
Q  134 gtgagagagatttcaagcatacattgtcgtcgttgaggaatttgaagacacattcgcaacactcatctggtaaatatgaaccagaa 219  Q
    ||||||||||||||||| |   ||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  41900266 gtgagagagatttcaagtagtgattatcgtctttgaggaatttgaagacacattcccaacactcatctggtaaatatgaaccagaa 41900181  T

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Target: chr5; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 108 - 221
Target Start/End: Original strand, 32268817 - 32268930
Alignment:
Q  108 gatggagagcaactgtttggagacgagtgagagagatttcaagcatacattgtcgtcgttgaggaatttgaagacacattcgcaacactcatctggtaaa 207  Q
    ||||||||| ||||||||||||||||  ||||||||||||||||||  ||||| ||| || | |||||||||||||||||| ||||||||||||||||||    
T  32268817 gatggagagtaactgtttggagacgatggagagagatttcaagcatcgattgttgtctttcaagaatttgaagacacattcccaacactcatctggtaaa 32268916  T
Q  208 tatgaaccagaaat 221  Q
    ||||||||||||||    
T  32268917 tatgaaccagaaat 32268930  T

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Target: chr5; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 33 - 133
Target Start/End: Original strand, 32268718 - 32268818
Alignment:
Q  33 gaatctacgaaagagagttggaagaaaagggagggttggatcacagactgtgagagagaatcgaagattgttggagatggagagcaactgtttggagacg 132  Q
    ||||||||| |||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||  ||||| ||||||||| |||||||||||||||    
T  32268718 gaatctacgcaagagagtaggaagaaaaggaagggttggatcatagactgtgagagagaatcgaagacggttggtgatggagagtaactgtttggagacg 32268817  T
Q  133 a 133  Q
    |    
T  32268818 a 32268818  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 209
Target Start/End: Complemental strand, 41886336 - 41886296
Alignment:
Q  169 aggaatttgaagacacattcgcaacactcatctggtaaata 209  Q
    |||||||||||||||||||| ||||||||||| ||||||||    
T  41886336 aggaatttgaagacacattcccaacactcatcaggtaaata 41886296  T

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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 59 - 145
Target Start/End: Original strand, 6007639 - 6007725
Alignment:
Q  59 aagggagggttggatcacagactgtgagagagaatcgaagattgttggagatggagagcaactgtttggagacgagtgagagagatt 145  Q
    ||||||| ||||||| |||||  |||||||||||||| ||| |||||| ||||||||| |||||||| |||||||| ||||||||||    
T  6007639 aagggagagttggatgacagatagtgagagagaatcggagactgttggtgatggagaggaactgtttcgagacgagggagagagatt 6007725  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 150
Target Start/End: Complemental strand, 55907499 - 55907434
Alignment:
Q  85 agagagaatcgaagattgttggagatggagagcaactgtttggagacgagtgagagagatttcaag 150  Q
    ||||||||||||||| |||||| ||  ||||| |||||||||||||||  ||||||||||||||||    
T  55907499 agagagaatcgaagagtgttggtgactgagagaaactgtttggagacggttgagagagatttcaag 55907434  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 548220 - 548318
Alignment:
Q  52 ggaagaaaagggagggttggatcacagactgtgagagagaatcgaagattgttggagatggagagcaactgtttggagacgagtgagagagatttcaag 150  Q
    |||||||||||| | ||| ||| | |||||||||| |||| | ||||||| |||| ||||||||| |||||||| ||||| |  |||||||| ||||||    
T  548220 ggaagaaaagggcgtgtttgattatagactgtgagtgagagtggaagattattggtgatggagagaaactgttttgagacaacagagagagacttcaag 548318  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 1488872 - 1488824
Alignment:
Q  161 cgtcgttgaggaatttgaagacacattcgcaacactcatctggtaaata 209  Q
    |||||||||||||||||| ||||||||| || |||||||| ||||||||    
T  1488872 cgtcgttgaggaatttgacgacacattcccagcactcatcaggtaaata 1488824  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 144
Target Start/End: Original strand, 2525761 - 2525816
Alignment:
Q  89 agaatcgaagattgttggagatggagagcaactgtttggagacgagtgagagagat 144  Q
    ||||||||||| |||||| |||||| || |||||||| |||||||| |||||||||    
T  2525761 agaatcgaagactgttggtgatggacagaaactgttttgagacgagggagagagat 2525816  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 210
Target Start/End: Complemental strand, 1537295 - 1537250
Alignment:
Q  165 gttgaggaatttgaagacacattcgcaacactcatctggtaaatat 210  Q
    |||||||||| |||| |||||||| ||||||||||| |||||||||    
T  1537295 gttgaggaatctgaatacacattcccaacactcatcaggtaaatat 1537250  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 149
Target Start/End: Original strand, 2168015 - 2168080
Alignment:
Q  84 gagagagaatcgaagattgttggagatggagagcaactgtttggagacgagtgagagagatttcaa 149  Q
    |||||||||||||||| | |||| |||||| || ||||| |||||||| | ||||||||| |||||    
T  2168015 gagagagaatcgaagactattggtgatggacagaaactgcttggagacaactgagagagacttcaa 2168080  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 146
Target Start/End: Complemental strand, 2625411 - 2625367
Alignment:
Q  102 gttggagatggagagcaactgtttggagacgagtgagagagattt 146  Q
    ||||||||||||||| || ||||||||||| || |||||||||||    
T  2625411 gttggagatggagagaaaatgtttggagactagcgagagagattt 2625367  T

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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 58 - 152
Target Start/End: Complemental strand, 513520 - 513426
Alignment:
Q  58 aaagggagggttggatcacagactgtgagagagaatcgaagattgttggagatggagagcaactgtttggagacgagtgagagagatttcaagca 152  Q
    |||||||||||| ||  || ||| |||||||||||||| |||||||||| ||||||||| |||||||| ||||||   |||||||||||||||||    
T  513520 aaagggagggtttgaatacggacagtgagagagaatcggagattgttggtgatggagagtaactgttttgagacggcggagagagatttcaagca 513426  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 209
Target Start/End: Complemental strand, 51120372 - 51120330
Alignment:
Q  167 tgaggaatttgaagacacattcgcaacactcatctggtaaata 209  Q
    |||||||||||||||||||||| ||||| ||||| ||||||||    
T  51120372 tgaggaatttgaagacacattcccaacagtcatcaggtaaata 51120330  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 152
Target Start/End: Complemental strand, 15091421 - 15091347
Alignment:
Q  78 gactgtgagagagaatcgaagattgttggagatggagagcaactgtttggagacgagtgagagagatttcaagca 152  Q
    |||| ||||||| ||| ||||| |||||| ||||||||| ||||||||||||||||| |||||||| ||||||||    
T  15091421 gactctgagagaaaatagaagactgttggtgatggagaggaactgtttggagacgagggagagagaattcaagca 15091347  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 150
Target Start/End: Complemental strand, 10168865 - 10168806
Alignment:
Q  91 aatcgaagattgttggagatggagagcaactgtttggagacgagtgagagagatttcaag 150  Q
    ||||||||| |||||| ||||||||| |||||||||||||| || || ||||| ||||||    
T  10168865 aatcgaagagtgttggtgatggagaggaactgtttggagacaagggatagagaattcaag 10168806  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 150
Target Start/End: Complemental strand, 10176390 - 10176331
Alignment:
Q  91 aatcgaagattgttggagatggagagcaactgtttggagacgagtgagagagatttcaag 150  Q
    ||||||||| |||||| ||||||||| |||||||||||||| || || ||||| ||||||    
T  10176390 aatcgaagagtgttggtgatggagaggaactgtttggagacaagggatagagaattcaag 10176331  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 213
Target Start/End: Original strand, 10616209 - 10616250
Alignment:
Q  172 aatttgaagacacattcgcaacactcatctggtaaatatgaa 213  Q
    |||||||||| |||||| ||||||||||| ||||||||||||    
T  10616209 aatttgaagatacattcccaacactcatcaggtaaatatgaa 10616250  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 150
Target Start/End: Complemental strand, 1036241 - 1036176
Alignment:
Q  85 agagagaatcgaagattgttggagatggagagcaactgtttggagacgagtgagagagatttcaag 150  Q
    ||||||||||||||| |||||| ||  ||||| |||||||||||||||  ||||||||||||||||    
T  1036241 agagagaatcgaagagtgttggtgactgagagaaactgtttggagacggttgagagagatttcaag 1036176  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 45244574 - 45244526
Alignment:
Q  161 cgtcgttgaggaatttgaagacacattcgcaacactcatctggtaaata 209  Q
    |||||||||||||||| ||||||||||| ||||||||||| ||||||||    
T  45244574 cgtcgttgaggaatttcaagacacattcccaacactcatcaggtaaata 45244526  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 150
Target Start/End: Original strand, 32152208 - 32152271
Alignment:
Q  87 agagaatcgaagattgttggagatggagagcaactgtttggagacgagtgagagagatttcaag 150  Q
    ||||||||| ||| |||||| ||||||||| ||||||||||||||||| ||||| || ||||||    
T  32152208 agagaatcggagactgttggtgatggagaggaactgtttggagacgagggagagtgaattcaag 32152271  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 17642659 - 17642614
Alignment:
Q  164 cgttgaggaatttgaagacacattcgcaacactcatctggtaaata 209  Q
    |||||||||||||||||||| | || ||||||||||| ||||||||    
T  17642659 cgttgaggaatttgaagacagactcccaacactcatcaggtaaata 17642614  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 150
Target Start/End: Original strand, 33161430 - 33161498
Alignment:
Q  82 gtgagagagaatcgaagattgttggagatggagagcaactgtttggagacgagtgagagagatttcaag 150  Q
    ||||| |||||||||||| | || | ||||||||| ||||||||||||||||| || ||||| ||||||    
T  33161430 gtgagtgagaatcgaagactattagtgatggagagaaactgtttggagacgagggatagagaattcaag 33161498  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 143
Target Start/End: Original strand, 6395772 - 6395833
Alignment:
Q  82 gtgagagagaatcgaagattgttggagatggagagcaactgtttggagacgagtgagagaga 143  Q
    ||||| || ||||||||||  |||| ||||||||| ||||| ||||||||||| ||||||||    
T  6395772 gtgagtgaaaatcgaagatgattggtgatggagaggaactgcttggagacgagggagagaga 6395833  T

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