View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17053_low_7 (Length: 233)

Name: NF17053_low_7
Description: NF17053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17053_low_7
NF17053_low_7
[»] chr8 (2 HSPs)
chr8 (1-216)||(25886399-25886614)
chr8 (2-216)||(44350243-44350461)
[»] chr2 (5 HSPs)
chr2 (1-205)||(14305337-14305553)
chr2 (1-147)||(14283649-14283795)
chr2 (1-212)||(14321721-14321944)
chr2 (22-145)||(14270875-14270998)
chr2 (155-212)||(14283572-14283629)


Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 25886614 - 25886399
Alignment:
Q  1 tcatcttcctctacaccacaactcatacttcaatggttaacctttcttttcctatctccatgtcctcaaagacttctcctttctgctcttgattccttgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25886614 tcatcttcctctacaccacaactcatacttcaatggttaacctttcttttcctatctccatgtcctcaaagacttctcctttctgctcttgattccttgt 25886515  T
Q  101 ttttgctctccctcttagcttttgcagttcacaaactctattcaagagcaaacactacctcctcaatcacaaagccacttctgaaagagaaagattctga 200  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25886514 ttttgctctccctcttagcttctgcagttcacaaactctattcaagagcaaacactacctcctcaatcacaaagccacttctgaaagagaaagattctga 25886415  T
Q  201 ctatagagtcactctt 216  Q
    ||||||||||||||||    
T  25886414 ctatagagtcactctt 25886399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 2 - 216
Target Start/End: Complemental strand, 44350461 - 44350243
Alignment:
Q  2 catcttcctctacaccacaactcatacttcaatggttaacctttcttttcctatct-ccatgtcctcaaagacttctcctttctgctcttgattccttgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||        
T  44350461 catcttcctctacaccacaactcatacttcaatggttaacctttcttttcctatctgaaatgtcctcaaagacttctcctttctgctcttgattcc---- 44350366  T
Q  101 ttttgctctccctcttagcttttgcagttcacaaactctattcaaga------------gcaaacactacctcctcaatcacaaagccacttctgaaaga 188  Q
         |||||||||||||||||||||| |||||||||||||||||||             | |||| || ||| ||||||||||| ||||||||||||||    
T  44350365 -----ctctccctcttagcttttgcagctcacaaactctattcaagaatcaactcaaattccaacaataactcttcaatcacaaaaccacttctgaaaga 44350271  T
Q  189 gaaagattctgactatagagtcactctt 216  Q
    |||||| ||| |||||||||||||||||    
T  44350270 gaaagactctaactatagagtcactctt 44350243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 116; Significance: 4e-59; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 14305553 - 14305337
Alignment:
Q  1 tcatcttcctctacaccacaactcatacttcaatggttaacctttcttttcctatctccatgtcctcaaagacttctcctttctgctcttgattccttgt 100  Q
    |||||||| |||||||||||| |||| |||||||||||||  ||  ||||||||||||| |||||||| |||||||| ||||||||||||||||||||||    
T  14305553 tcatcttcttctacaccacaattcattcttcaatggttaaggttcattttcctatctccttgtcctcagagacttctactttctgctcttgattccttgt 14305454  T
Q  101 ttttgctctccctcttagcttttgcagttcacaaactctattc------------aagagcaaacactacctcctcaatcacaaagccacttctgaaaga 188  Q
    ||||||||||||||||||||||||||| ||| |||||||||||            |||||||||||||| ||||||||||||||| ||||||||| ||||    
T  14305453 ttttgctctccctcttagcttttgcagctcaaaaactctattcaagattctattcaagagcaaacactagctcctcaatcacaaaaccacttctgcaaga 14305354  T
Q  189 gaaagattctgactata 205  Q
    |||||||||||||||||    
T  14305353 gaaagattctgactata 14305337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 14283795 - 14283649
Alignment:
Q  1 tcatcttcctctacaccacaactcatacttcaatggttaacctttcttttcctatctccatgtcctcaaagacttctcctttctgctcttgattccttgt 100  Q
    ||||||||||||||||||||| ||||||||||||||||||  ||  ||||||||||||| |||||||| |||||||| ||||||||||||||||||||||    
T  14283795 tcatcttcctctacaccacaattcatacttcaatggttaaggttcattttcctatctccttgtcctcagagacttcttctttctgctcttgattccttgt 14283696  T
Q  101 ttttgctctccctcttagcttttgcagttcacaaactctattcaaga 147  Q
    ||||||||||||||||||||||| ||| ||| |||||||||||||||    
T  14283695 ttttgctctccctcttagctttttcagctcaaaaactctattcaaga 14283649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 14321944 - 14321721
Alignment:
Q  1 tcatcttcctctacaccacaactcatacttcaatggttaacctttcttttcctatctccatgtcctcaaagacttctcctttctgctcttgattccttgt 100  Q
    |||||||||||||||||| |||||||| ||||||||||||  ||  |||| ||||||||||||||||| ||||||||  |||||||||||||||||||||    
T  14321944 tcatcttcctctacaccagaactcataattcaatggttaaggttcattttgctatctccatgtcctcagagacttcttgtttctgctcttgattccttgt 14321845  T
Q  101 ttttgctctccctcttagcttttgcagttcacaaactctattc------------aagagcaaacactacctcctcaatcacaaagccacttctgaaaga 188  Q
    |||||||||  |||||||||||||||| ||| |||||||||||            |||||||||||||| ||||||||||||||| ||||||||| | ||    
T  14321844 ttttgctctttctcttagcttttgcagctcaaaaactctattcaagattctattcaagagcaaacactagctcctcaatcacaaaaccacttctgcagga 14321745  T
Q  189 gaaagattctgactatagagtcac 212  Q
     |||||||||||||||||| ||||    
T  14321744 caaagattctgactatagaatcac 14321721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 22 - 145
Target Start/End: Complemental strand, 14270998 - 14270875
Alignment:
Q  22 ctcatacttcaatggttaacctttcttttcctatctccatgtcctcaaagacttctcctttctgctcttgattccttgtttttgctctccctcttagctt 121  Q
    ||||| |||||||||||||  ||  |||||| ||||||||||||||| || ||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  14270998 ctcattcttcaatggttaaggttcattttccgatctccatgtcctcagaggcttcttctttcttctcttgattccttgtttttgctctccctcttagctt 14270899  T
Q  122 ttgcagttcacaaactctattcaa 145  Q
    |||||| |||||||||||||||||    
T  14270898 ttgcagctcacaaactctattcaa 14270875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 212
Target Start/End: Complemental strand, 14283629 - 14283572
Alignment:
Q  155 ctacctcctcaatcacaaagccacttctgaaagagaaagattctgactatagagtcac 212  Q
    ||||||||| ||||||||| ||||||||| || |||| ||||||||||||||| ||||    
T  14283629 ctacctccttaatcacaaaaccacttctgcaaaagaacgattctgactatagaatcac 14283572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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