View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17053_low_8 (Length: 233)
Name: NF17053_low_8
Description: NF17053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17053_low_8 |
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| [»] chr1 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 48297410 - 48297174
Alignment:
| Q |
1 |
ataagtattccaccgcttacactggacccttacgatggtccaggaaggaaccaagaaacccctaatacactagcatcacctccac----aagctatagga |
96 |
Q |
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| T |
48297410 |
ataagtattccaccgcttacactagacccttacgatggtccaggaaggaactaggagaactctaatacactagcatcacctccatcatgaattcatagga |
48297311 |
T |
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| Q |
97 |
ataggtacctcactcatgtatactctaaaaaacatccaatcaataataggataccaatcaaattttcctttagaataccaacttttgctgctccttgaaa |
196 |
Q |
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| T |
48297310 |
ataggtacctcaatcatgtatactccaaaaaacagccaatcaataataggataccaatcaaattttcctttcggataccaacctttgttgctccttgaaa |
48297211 |
T |
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| Q |
197 |
gtagaaacatagacatacttaaaaaccaccaaataat |
233 |
Q |
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| T |
48297210 |
gtagaaacataaacatacttaaaaaccaccaaataat |
48297174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 93 - 233
Target Start/End: Complemental strand, 41075248 - 41075105
Alignment:
| Q |
93 |
aggaataggtacctcactcatgtatactctaaaaaacatccaatcaataataggataccaatcaaattttcctttagaatacc---aacttttgctgctc |
189 |
Q |
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||||||||||||||||||||||||||||| |||||||| ||| ||||||| ||||||||||||||||| |||||| |||| ||| |||| | ||| |
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| T |
41075248 |
aggaataggtacctcactcatgtatactccaaaaaacaaccactcaataaccggataccaatcaaatttgcctttatggtaccaataacctttgttactc |
41075149 |
T |
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| Q |
190 |
cttgaaagtagaaacatagacatacttaaaaaccaccaaataat |
233 |
Q |
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| T |
41075148 |
cttgaaagtagtaacacagacatacttaaaaatcaccaaataat |
41075105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 4 - 233
Target Start/End: Complemental strand, 41086825 - 41086598
Alignment:
| Q |
4 |
agtattccaccgcttacactggacccttacgatggtccaggaaggaaccaagaaacccctaatacactagcatcacctccacaagctat----aggaata |
99 |
Q |
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||||||||||| |||||| ||||||||| || ||||| ||||||||| || | | |||||||||||||| |||||||| | || ||||||| |
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| T |
41086825 |
agtattccaccatttacaccagacccttacaatagtccaaaaaggaaccaggagaactctaatacactagcaacacctccattatgaattcagaggaata |
41086726 |
T |
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| Q |
100 |
ggtacctcactcatgtatactctaaaaaacatccaatcaataataggataccaatcaaattttcctttagaataccaacttttgctgctccttgaaagta |
199 |
Q |
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| T |
41086725 |
ggtacctcactcatgtatactcaaaaaaacaaccaatcaataaccggataccaatcaaatttgccttcatggtaccatcctttg-tactccttgaaagta |
41086627 |
T |
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| Q |
200 |
gaaacatagacatacttaaaaaccaccaaataat |
233 |
Q |
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| T |
41086626 |
g-----taaacatacttaaaaactaccaaataat |
41086598 |
T |
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