View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17053_low_9 (Length: 213)
Name: NF17053_low_9
Description: NF17053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17053_low_9 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 15 - 213
Target Start/End: Original strand, 41784735 - 41784933
Alignment:
| Q |
15 |
aaccgaacatactatgatggaagagaaagagggttttcttgcgcggttaaaggaaatggaattcaaattggaaacacaaagcaaccagaaaagtgagttg |
114 |
Q |
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| T |
41784735 |
aaccgaacatactatgatggaagagaaagagggttttcttgcgcggttaaaggaaatggaattcaaattggaaacacaaagcaaccagaaaagtgagttg |
41784834 |
T |
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| Q |
115 |
caagaggagttagctgaaatgagatctactgaacaaactatgatggaagagaaagaaggttttcttgcgagattaaagaacatggaactcgaattggaa |
213 |
Q |
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| T |
41784835 |
caagaggagttagctgaaatgagatctactgaacaaactatgatggaagagaaagaaggttttcttgcgaggttaaagaacatggaactcgaattggaa |
41784933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 41784865 - 41784972
Alignment:
| Q |
19 |
gaacatactatgatggaagagaaagagggttttcttgcgcggttaaaggaaatggaattcaaattggaaacacaaagcaaccagaaaagtgagttgcaag |
118 |
Q |
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| T |
41784865 |
gaacaaactatgatggaagagaaagaaggttttcttgcgaggttaaagaacatggaactcgaattggaaactcaaatcaatcagagaaatgagttggaag |
41784964 |
T |
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| Q |
119 |
aggagtta |
126 |
Q |
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| T |
41784965 |
agcagtta |
41784972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 124 - 213
Target Start/End: Original strand, 41784718 - 41784807
Alignment:
| Q |
124 |
ttagctgaaatgagatctactgaacaaactatgatggaagagaaagaaggttttcttgcgagattaaagaacatggaactcgaattggaa |
213 |
Q |
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| T |
41784718 |
ttagccgaaatgaaatcaaccgaacatactatgatggaagagaaagagggttttcttgcgcggttaaaggaaatggaattcaaattggaa |
41784807 |
T |
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