View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17054_high_1 (Length: 535)
Name: NF17054_high_1
Description: NF17054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17054_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 513; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 4 - 524
Target Start/End: Complemental strand, 45107916 - 45107396
Alignment:
| Q |
4 |
tatgtgttgtttctgttcgaaacaggcgtgaaaatggatttcaacatgatcagaaggacaggaagaaaaggatggacgatttcacttttggggttagtaa |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
45107916 |
tatgtgttgtttctgttcgaaacaggcgtgaaaatggatttcaacatgatcagaaggacaggaagaaaaggatggacgatttcgcttttggggttagtaa |
45107817 |
T |
|
| Q |
104 |
cccctatgctcattggtttatgtttctctatctgggatccaaaacatagaaatgtttttaacaaagagtccattgaaaaaggtataatactgctaggaca |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45107816 |
cccctatgctcattggtttatgtttctctatctgggatccaaaacatagaaatgtttttaacaaagagtccattgaaaaaggtataatactgctaggaca |
45107717 |
T |
|
| Q |
204 |
caatacaacttcatttgcagtgattgtgtctctcttaaaagaccttaaacttctaaactctgaacttggaagattagcattatctgttgctttggttggt |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45107716 |
caatacaacttcatttgcagtgattgtgtctctcttaaaagaccttaaacttctaaactctgaacttggaagattagcattatctgttgctttggttggt |
45107617 |
T |
|
| Q |
304 |
gagatattgagtaacatttttataactgttacctcaactctgcttgatcagggtcattatatttcacctgtcatgaggttgggatatttatttgccatca |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45107616 |
gagatattgagtaacatttttataactgttacctcaactctgcttgatcagggtcattatatttcacctgtcatgaggttgggatatttatttgccatca |
45107517 |
T |
|
| Q |
404 |
ctctcttcattttattaatctaccgtcctgcaatgttttggattgttgaacatactcctgaaggaaaagaagttaaggatatttacatcaacattgttat |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45107516 |
ctctcttcattttattaatctaccgtcctgcaatgttttggattgttgaacatactcctgaaggaaaagaagttaaggatatttacatcaacattgttat |
45107417 |
T |
|
| Q |
504 |
tgggattctcttttgtctgtg |
524 |
Q |
| |
|
|||||||||||||||| |||| |
|
|
| T |
45107416 |
tgggattctcttttgtttgtg |
45107396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University