View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17055_high_1 (Length: 541)
Name: NF17055_high_1
Description: NF17055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17055_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 534
Target Start/End: Original strand, 40170852 - 40171387
Alignment:
| Q |
1 |
gatatttgaggagatatttttggaat--gcacatcatacagtagtagaatgattgaatataattagatgtatgtgtaaaatttatttacaccatcgggat |
98 |
Q |
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| T |
40170852 |
gatatttgaggagatattttaggaatatgcacataataaagtagtagaatgattgaatataattagatgcatttgtaaattttatttacaccattgggat |
40170951 |
T |
|
| Q |
99 |
atacaacttaaatcctaattcgtgcatgtatgtcctaattttatgtactttaataggactgtttttgttacttgaaggttccatgcgtgtccaaaaccgc |
198 |
Q |
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| T |
40170952 |
atacaacttaaatcctaattcgtgcatgtatgtgcaaattttatgtactttaataggactgtttttgttacttgaaggttccatgtgcgtccaaaactgc |
40171051 |
T |
|
| Q |
199 |
aaagacaaaaaaggattctgttgcgagttcacagaaaaatgttatgtccgagaacattttgcaaccctcatcgagagtaaaatcgagtggatttctgctc |
298 |
Q |
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| T |
40171052 |
aaagacaaagaaggattccattgcaagttcgcagaaaaatgttatgtccgagaacattttgcaaccctcatcgagaataagatcgagtggatttctggtc |
40171151 |
T |
|
| Q |
299 |
tccaaagaggcatgttcgaccaaagctagtcaaattaagactggagttaaagcattcattgctccaagcaatgatggtgctgtttgtcccgattttaaga |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
40171152 |
tccaaagaggcatgttcgaccaaagctagtcaaattaagactggagttaaagcattcattgctccaagcaatgatggtgctgtttgtccagattttaaga |
40171251 |
T |
|
| Q |
399 |
gtgtggtctgtagtccgagatggatggacatttacccaagtaattccttcagcggttccggttcactggatgagagcatgtcaaccagcgattctctgag |
498 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
40171252 |
gtgtggtctgtagtccgagatggatggacatttacccaagtaattccttcagcggttctgcttcactggatgagagcatgtcaaccagcgattctctgat |
40171351 |
T |
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| Q |
499 |
gactccggaatttgaatatattcacaatgatgatgt |
534 |
Q |
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| T |
40171352 |
gactccagaatttgaatatattcggaatgacgatgt |
40171387 |
T |
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