View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17055_high_15 (Length: 284)
Name: NF17055_high_15
Description: NF17055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17055_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 8 - 269
Target Start/End: Complemental strand, 7630100 - 7629839
Alignment:
| Q |
8 |
gcagaacctgtgttgaaaactcacgaccttaaatttgcaagtagaccatcttttcttggatttagaaaattgtcttacaatggtttagatctggcttgtg |
107 |
Q |
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| T |
7630100 |
gcagaacaagtgttgaaaactcacgaccttaaatttgcaagtagaccatcttttcttggatttagaaaattgtcttacaatggtttagatctggcttgtg |
7630001 |
T |
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| Q |
108 |
caccttatagtccttattggagagagatgagaaaactttgtgttcatcacctctttagctctcaacgtgcccattcttttaggcccgttagagaaaatga |
207 |
Q |
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| T |
7630000 |
caccttatagtccttattggagagagatgagaaaactttgtgttcatcacctctttagctctcaacgtgcccattcttttaggcccgttagagaaaatga |
7629901 |
T |
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| Q |
208 |
agtggcccagttgattcaaaagttgtcgcaatatggtggtgatgaaaaaggtgtgaacttga |
269 |
Q |
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| T |
7629900 |
agtggcccaattgattcaaaagttgtcgcaatatggtggtgatgaaaaaggtgcgaacttga |
7629839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 8 - 269
Target Start/End: Complemental strand, 7636883 - 7636622
Alignment:
| Q |
8 |
gcagaacctgtgttgaaaactcacgaccttaaatttgcaagtagaccatcttttcttggatttagaaaattgtcttacaatggtttagatctggcttgtg |
107 |
Q |
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| T |
7636883 |
gcagaacaagtgttgaaaacccatgaccttaaatttgcaagtagaccatctttcctaggactaagaaaattgtcttacaatggtttagatcttgcttttg |
7636784 |
T |
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| Q |
108 |
caccttatagtccttattggagagagatgagaaaactttgtgttcatcacctctttagctctcaacgtgcccattcttttaggcccgttagagaaaatga |
207 |
Q |
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| T |
7636783 |
caccttatagtccttattggagagagatgagaaaactttgtgttcaacatctctttagctctcaacgtgtccattcttttaggcccgttagagaaaatga |
7636684 |
T |
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| Q |
208 |
agtggcccagttgattcaaaagttgtcgcaatatggtggtgatgaaaaaggtgtgaacttga |
269 |
Q |
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| T |
7636683 |
agtggcccaattgattcaaaagttgtcgcaatatggtggtgatgaaaaaggtgcgaacttga |
7636622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 8 - 269
Target Start/End: Complemental strand, 7623791 - 7623530
Alignment:
| Q |
8 |
gcagaacctgtgttgaaaactcacgaccttaaatttgcaagtagaccatcttttcttggatttagaaaattgtcttacaatggtttagatctggcttgtg |
107 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||| || || |
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| T |
7623791 |
gcagaacaagtgttgaaaactcacgaccttaaatttgcaagtagaccatcttttcttggactaagaaaattgtcttacaatggtttagatttgggttttg |
7623692 |
T |
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| Q |
108 |
caccttatagtccttattggagagagatgagaaaactttgtgttcatcacctctttagctctcaacgtgcccattcttttaggcccgttagagaaaatga |
207 |
Q |
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| T |
7623691 |
caccttatagctcttattggagagatatgaaaaagctttgtgctcttcacctctttagccctaaaagtctacattcttttaggcctattagagaaaatga |
7623592 |
T |
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| Q |
208 |
agtggcccagttgattcaaaagttgtcgcaatatggtggtgatgaaaaaggtgtgaacttga |
269 |
Q |
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|||||| | |||||||||||| |||| || |||| |||||||||||||||||| ||||||| |
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| T |
7623591 |
agtggctgaattgattcaaaagctgtcacagtatgatggtgatgaaaaaggtgtaaacttga |
7623530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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