View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17055_high_16 (Length: 280)

Name: NF17055_high_16
Description: NF17055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17055_high_16
NF17055_high_16
[»] chr7 (12 HSPs)
chr7 (1-261)||(46481337-46481597)
chr7 (6-261)||(46475694-46475954)
chr7 (1-170)||(46492689-46492858)
chr7 (52-174)||(46324285-46324407)
chr7 (105-198)||(46510005-46510101)
chr7 (52-182)||(46522574-46522704)
chr7 (52-182)||(46530007-46530137)
chr7 (52-174)||(46328717-46328839)
chr7 (52-174)||(46519240-46519362)
chr7 (52-152)||(46525685-46525785)
chr7 (5-92)||(46513666-46513749)
chr7 (61-150)||(46464054-46464143)
[»] chr4 (1 HSPs)
chr4 (46-176)||(89069-89199)


Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 46481597 - 46481337
Alignment:
Q  1 gatttagtttacacttcttttggtaccaagcattacatcgagagcggtggtttcaagaacgatgtgccaaatttggaggaagtggttatacaaaaaggtg 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46481597 gatttagtttacacttcttttggtaccaagcaatacatcgagagcggtggtttcaagaacgatgtgccaaatttggaggaagtggttatacaaaaaggtg 46481498  T
Q  101 tggctcacttcaacaaccaagaagctgctgaggaaatcagtaatcacatttatgattttatcaagaagttctgatcttatctcaattctcaagcaactat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46481497 tggctcacttcaacaaccaagaagctgctgaggaaatcagtaatcacatttatgattttatcaagaagttctgatcttatctcaattctcaagcaactat 46481398  T
Q  201 tcgctagagttttgtttaatcgtcttctaataaataatttagcaacaatatatgcttttct 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46481397 tcgctagagttttgtttaatcgtcttctaataaataatttagcaacaatatatgcttttct 46481337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 6 - 261
Target Start/End: Complemental strand, 46475954 - 46475694
Alignment:
Q  6 agtttacacttcttttggtaccaagcattacatcgagagcggtggtttcaagaacgatgtgccaaatttggaggaagtggttatacaaaaaggtgtggct 105  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||  |||||||||||    
T  46475954 agtttacacttcttttggtaccaagcaatacatcgagagtggtggtttcaagaaagatgtgccaaatttggaggaagttgttatacaggaaggtgtggct 46475855  T
Q  106 cacttcaacaaccaagaagctgctgaggaaatcagtaatcacatttatgattttatcaagaagttctgatcttat---ctcaattctcaagcaactattc 202  Q
    ||||| |||||||||||||||||||| || ||||| |||||||||||||||||||||||||| |||||||| |||   |||||||| ||||| |||||||    
T  46475854 cactttaacaaccaagaagctgctgaagatatcagcaatcacatttatgattttatcaagaaattctgatcgtatcaactcaattcgcaagccactattc 46475755  T
Q  203 gcta-gagttttgtttaatcgtcttc-taataaataatttagcaacaatatatgcttttct 261  Q
     | | |||||  ||| |||||| ||| ||||||||||||||||  |||| |||| ||||||    
T  46475754 accaggagttaagttaaatcgttttcttaataaataatttagctgcaatctatgtttttct 46475694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 46492858 - 46492689
Alignment:
Q  1 gatttagtttacacttcttttggtaccaagcattacatcgagagcggtggtttcaagaacgatgtgccaaatttggaggaagtggttatacaaaaaggtg 100  Q
    ||||||||||||||||||| |||||||||||| ||||||||||| ||||| |||||||| |||||||| |||||||||||||| ||||||||  ||||||    
T  46492858 gatttagtttacacttcttctggtaccaagcaatacatcgagagtggtggcttcaagaaagatgtgcccaatttggaggaagttgttatacaggaaggtg 46492759  T
Q  101 tggctcacttcaacaaccaagaagctgctgaggaaatcagtaatcacatttatgattttatcaagaagtt 170  Q
    |||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||    
T  46492758 tggctcacttcaacaaccaagaagctgctgaggatattagcaatcacatttatgattttatcaagaagtt 46492689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 52 - 174
Target Start/End: Original strand, 46324285 - 46324407
Alignment:
Q  52 ttcaagaacgatgtgccaaatttggaggaagtggttatacaaaaaggtgtggctcacttcaacaaccaagaagctgctgaggaaatcagtaatcacattt 151  Q
    |||||| | |||||||| |||||||| |||||| || | |||||||| ||||||||||||||||| |||||||| || ||||||||||||||||||||||    
T  46324285 ttcaaggaagatgtgccgaatttggaagaagtgattgtccaaaaaggagtggctcacttcaacaatcaagaagcagcagaggaaatcagtaatcacattt 46324384  T
Q  152 atgattttatcaagaagttctga 174  Q
    |||| || |||||||||||||||    
T  46324385 atgaattcatcaagaagttctga 46324407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 105 - 198
Target Start/End: Complemental strand, 46510101 - 46510005
Alignment:
Q  105 tcacttcaacaaccaagaagctgctgaggaaatcagtaatcacatttatgattttatcaagaagttctgatcttat---ctcaattctcaagcaact 198  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||   ||||||||||||||||||    
T  46510101 tcactacaacaaccaagaagctgctgaggaagtcagtaatcacatttatgattttatcaagaagtattgatcttatcaactcaattctcaagcaact 46510005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 182
Target Start/End: Complemental strand, 46522704 - 46522574
Alignment:
Q  52 ttcaagaacgatgtgccaaatttggaggaagtggttatacaaaaaggtgtggctcacttcaacaaccaagaagctgctgaggaaatcagtaatcacattt 151  Q
    |||||| | ||||| || ||| |||| |||||| |||| |||||||| ||||| ||||||||||| |||||||| || |||||||| |||||||||||||    
T  46522704 ttcaaggaagatgttcccaatctggaagaagtgattatccaaaaaggagtggcgcacttcaacaatcaagaagcagcagaggaaataagtaatcacattt 46522605  T
Q  152 atgattttatcaagaagttctgatcttatct 182  Q
    |||| || ||||||||||||||| |||||||    
T  46522604 atgaattcatcaagaagttctgagcttatct 46522574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 182
Target Start/End: Complemental strand, 46530137 - 46530007
Alignment:
Q  52 ttcaagaacgatgtgccaaatttggaggaagtggttatacaaaaaggtgtggctcacttcaacaaccaagaagctgctgaggaaatcagtaatcacattt 151  Q
    |||||| | ||||| || ||| |||| |||||| |||| |||||||| ||||| ||||||||||| |||||||| || |||||||| |||||||||||||    
T  46530137 ttcaaggaagatgttcccaatctggaagaagtgattatccaaaaaggagtggcgcacttcaacaatcaagaagcagcagaggaaataagtaatcacattt 46530038  T
Q  152 atgattttatcaagaagttctgatcttatct 182  Q
    |||| || ||||||||||||||| |||||||    
T  46530037 atgaattcatcaagaagttctgagcttatct 46530007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 52 - 174
Target Start/End: Original strand, 46328717 - 46328839
Alignment:
Q  52 ttcaagaacgatgtgccaaatttggaggaagtggttatacaaaaaggtgtggctcacttcaacaaccaagaagctgctgaggaaatcagtaatcacattt 151  Q
    |||||| | |||||||| |||||||| |||||| |||| |||||||| || |||||||||||||| ||||||||||  ||||||||||||||| ||||||    
T  46328717 ttcaaggaagatgtgccgaatttggaagaagtgattattcaaaaaggagttgctcacttcaacaatcaagaagctgaagaggaaatcagtaattacattt 46328816  T
Q  152 atgattttatcaagaagttctga 174  Q
    | || || |||| ||||||||||    
T  46328817 acgaattcatcatgaagttctga 46328839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 52 - 174
Target Start/End: Complemental strand, 46519362 - 46519240
Alignment:
Q  52 ttcaagaacgatgtgccaaatttggaggaagtggttatacaaaaaggtgtggctcacttcaacaaccaagaagctgctgaggaaatcagtaatcacattt 151  Q
    |||||| | |||||||| ||||||||||||||| || | |||||||| || ||||| |||||||| ||||||||||| |||||||| |||||||||||||    
T  46519362 ttcaaggaagatgtgccgaatttggaggaagtgattgtgcaaaaaggagtagctcatttcaacaatcaagaagctgcagaggaaattagtaatcacattt 46519263  T
Q  152 atgattttatcaagaagttctga 174  Q
    | || || |||||||| ||||||    
T  46519262 acgaattcatcaagaaattctga 46519240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 52 - 152
Target Start/End: Complemental strand, 46525785 - 46525685
Alignment:
Q  52 ttcaagaacgatgtgccaaatttggaggaagtggttatacaaaaaggtgtggctcacttcaacaaccaagaagctgctgaggaaatcagtaatcacattt 151  Q
    |||||| | |||||||  ||||||||||||||| || | |||||||| || |||||||||||||| ||||||||||  ||||||||||||||| ||||||    
T  46525785 ttcaaggaagatgtgctgaatttggaggaagtgattgttcaaaaaggagttgctcacttcaacaatcaagaagctgaagaggaaatcagtaattacattt 46525686  T
Q  152 a 152  Q
    |    
T  46525685 a 46525685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 92
Target Start/End: Complemental strand, 46513749 - 46513666
Alignment:
Q  5 tagtttacacttcttttggtaccaagcattacatcgagagcggtggtttcaagaacgatgtgccaaatttggaggaagtggttataca 92  Q
    ||||||||  |||||||||| | ||||| ||||| || || |||||||||||||    ||||||||||||||||||||||||||||||    
T  46513749 tagtttacgtttcttttggtgcgaagcaatacattgaaagtggtggtttcaaga----tgtgccaaatttggaggaagtggttataca 46513666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 150
Target Start/End: Complemental strand, 46464143 - 46464054
Alignment:
Q  61 gatgtgccaaatttggaggaagtggttatacaaaaaggtgtggctcacttcaacaaccaagaagctgctgaggaaatcagtaatcacatt 150  Q
    ||||| || ||||| ||||||||| || |||||||||| |||| |||||| || || |||||||| || || ||||||||||| ||||||    
T  46464143 gatgtaccgaatttagaggaagtgattgtacaaaaaggagtgggtcactttaataatcaagaagcagcagaagaaatcagtaaacacatt 46464054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 46 - 176
Target Start/End: Original strand, 89069 - 89199
Alignment:
Q  46 ggtggtttcaagaacgatgtgccaaatttggaggaagtggttatacaaaaaggtgtggctcacttcaacaaccaagaagctgctgaggaaatcagtaatc 145  Q
    |||||||||||||| ||||| |||  |||||||||||||||| | ||  ||||  | || |||||||||||||||||||| ||  | || ||||| ||||    
T  89069 ggtggtttcaagaaagatgttccaggtttggaggaagtggttgtgcaggaagggatagcacacttcaacaaccaagaagcagcacaagacatcagcaatc 89168  T
Q  146 acatttatgattttatcaagaagttctgatc 176  Q
    |||||||||| |||||  |||||||||||||    
T  89169 acatttatgactttattcagaagttctgatc 89199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University