View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17055_high_6 (Length: 372)

Name: NF17055_high_6
Description: NF17055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17055_high_6
NF17055_high_6
[»] chr3 (36 HSPs)
chr3 (20-214)||(11042495-11042689)
chr3 (213-359)||(13364842-13364988)
chr3 (208-359)||(198849-199000)
chr3 (214-359)||(46694242-46694387)
chr3 (213-359)||(19241800-19241946)
chr3 (210-359)||(3383072-3383221)
chr3 (214-359)||(36881282-36881425)
chr3 (214-359)||(23088063-23088208)
chr3 (213-353)||(29375137-29375277)
chr3 (213-353)||(43750136-43750276)
chr3 (225-318)||(32835129-32835222)
chr3 (213-335)||(13702768-13702890)
chr3 (214-292)||(27707363-27707441)
chr3 (272-351)||(19897067-19897146)
chr3 (273-346)||(37780996-37781069)
chr3 (213-266)||(12094581-12094634)
chr3 (233-299)||(48820444-48820510)
chr3 (302-359)||(27707120-27707177)
chr3 (213-266)||(44277456-44277509)
chr3 (214-266)||(19911509-19911561)
chr3 (211-299)||(37293434-37293522)
chr3 (272-342)||(1455297-1455367)
chr3 (237-351)||(54086577-54086690)
chr3 (214-266)||(38805245-38805297)
chr3 (280-343)||(17755221-17755284)
chr3 (280-343)||(19056541-19056604)
chr3 (212-255)||(19912174-19912217)
chr3 (212-255)||(38806341-38806384)
chr3 (213-283)||(48963155-48963223)
chr3 (305-351)||(18356007-18356053)
chr3 (273-351)||(24064283-24064361)
chr3 (262-359)||(26105079-26105176)
chr3 (273-351)||(52805166-52805244)
chr3 (305-346)||(6901655-6901696)
chr3 (210-242)||(13499331-13499363)
chr3 (243-351)||(53559750-53559858)
[»] chr6 (20 HSPs)
chr6 (213-359)||(29260191-29260337)
chr6 (213-353)||(1605578-1605718)
chr6 (225-359)||(30734615-30734749)
chr6 (214-359)||(8626482-8626627)
chr6 (213-353)||(13757207-13757347)
chr6 (213-353)||(7761300-7761438)
chr6 (233-353)||(31559874-31559994)
chr6 (212-353)||(15064832-15064973)
chr6 (214-353)||(8235624-8235763)
chr6 (214-359)||(4129435-4129572)
chr6 (213-359)||(17942442-17942590)
chr6 (220-329)||(30734772-30734879)
chr6 (262-344)||(3798151-3798233)
chr6 (272-351)||(21277574-21277652)
chr6 (209-266)||(19996716-19996773)
chr6 (263-351)||(14287038-14287125)
chr6 (272-346)||(11370630-11370704)
chr6 (213-255)||(19996321-19996363)
chr6 (272-305)||(33845469-33845502)
chr6 (311-351)||(30235447-30235487)
[»] chr1 (33 HSPs)
chr1 (214-359)||(23045411-23045556)
chr1 (213-359)||(40783789-40783935)
chr1 (208-349)||(284327-284468)
chr1 (214-353)||(321626-321765)
chr1 (213-353)||(23526239-23526379)
chr1 (214-353)||(24772043-24772182)
chr1 (214-359)||(47037984-47038127)
chr1 (215-353)||(27211102-27211240)
chr1 (212-353)||(46771635-46771776)
chr1 (234-353)||(33082765-33082884)
chr1 (224-353)||(52037260-52037387)
chr1 (272-353)||(1749365-1749446)
chr1 (273-355)||(7765072-7765154)
chr1 (272-342)||(1837978-1838046)
chr1 (212-266)||(9588668-9588722)
chr1 (214-351)||(51064893-51065033)
chr1 (213-266)||(3943059-3943112)
chr1 (214-266)||(41959078-41959130)
chr1 (262-351)||(31003926-31004012)
chr1 (262-336)||(3657125-3657199)
chr1 (273-351)||(18396754-18396832)
chr1 (262-351)||(52478016-52478103)
chr1 (282-351)||(31061594-31061662)
chr1 (274-339)||(40562733-40562797)
chr1 (210-255)||(44227844-44227889)
chr1 (213-266)||(44228229-44228282)
chr1 (214-266)||(13984992-13985044)
chr1 (272-351)||(27143151-27143231)
chr1 (262-343)||(40261419-40261501)
chr1 (211-255)||(41959809-41959853)
chr1 (209-255)||(3943763-3943809)
chr1 (262-351)||(34458863-34458950)
chr1 (236-280)||(40564241-40564285)
[»] chr7 (17 HSPs)
chr7 (213-353)||(10981507-10981647)
chr7 (211-359)||(27813808-27813956)
chr7 (216-359)||(36453256-36453399)
chr7 (214-353)||(40348960-40349099)
chr7 (214-353)||(47110451-47110588)
chr7 (214-359)||(25614485-25614628)
chr7 (262-346)||(3091565-3091649)
chr7 (274-353)||(27942177-27942256)
chr7 (272-346)||(7743542-7743615)
chr7 (262-343)||(16360432-16360511)
chr7 (213-266)||(2911549-2911602)
chr7 (210-266)||(25060134-25060190)
chr7 (262-353)||(3498892-3498983)
chr7 (273-351)||(16662155-16662231)
chr7 (273-351)||(17636515-17636591)
chr7 (237-351)||(37983179-37983289)
chr7 (305-342)||(28200298-28200335)
[»] chr4 (27 HSPs)
chr4 (213-353)||(25704650-25704790)
chr4 (212-359)||(24706379-24706526)
chr4 (213-359)||(40122617-40122763)
chr4 (213-353)||(12071560-12071700)
chr4 (213-353)||(21310424-21310564)
chr4 (213-359)||(14261043-14261189)
chr4 (213-359)||(44568836-44568982)
chr4 (213-353)||(22321405-22321545)
chr4 (211-359)||(21661667-21661815)
chr4 (211-359)||(21670431-21670579)
chr4 (214-353)||(34324720-34324860)
chr4 (212-359)||(50767862-50768009)
chr4 (209-353)||(20249151-20249294)
chr4 (216-353)||(31892240-31892373)
chr4 (244-329)||(1988065-1988150)
chr4 (262-351)||(20714488-20714577)
chr4 (268-351)||(32543535-32543617)
chr4 (272-346)||(6129093-6129167)
chr4 (239-351)||(19692748-19692860)
chr4 (239-351)||(19703333-19703445)
chr4 (214-343)||(26676714-26676843)
chr4 (274-337)||(34284171-34284234)
chr4 (282-351)||(18507404-18507472)
chr4 (262-351)||(48652268-48652356)
chr4 (286-353)||(21064834-21064899)
chr4 (233-266)||(19361666-19361699)
chr4 (311-351)||(51777715-51777755)
[»] chr8 (28 HSPs)
chr8 (210-353)||(2540069-2540212)
chr8 (212-359)||(40058435-40058582)
chr8 (214-359)||(11174355-11174500)
chr8 (214-349)||(3585451-3585586)
chr8 (213-359)||(11646457-11646603)
chr8 (214-359)||(43275531-43275674)
chr8 (214-359)||(37345571-37345716)
chr8 (214-359)||(7146913-7147058)
chr8 (213-359)||(40918863-40919007)
chr8 (214-359)||(36068080-36068225)
chr8 (225-353)||(30999661-30999787)
chr8 (214-353)||(27034997-27035135)
chr8 (214-359)||(20546421-20546564)
chr8 (265-351)||(13881094-13881181)
chr8 (213-346)||(28562420-28562554)
chr8 (262-351)||(28326797-28326883)
chr8 (262-353)||(37510314-37510405)
chr8 (213-266)||(8697899-8697952)
chr8 (213-266)||(41307962-41308015)
chr8 (275-351)||(35866675-35866751)
chr8 (214-266)||(45278702-45278754)
chr8 (213-346)||(28567918-28568051)
chr8 (213-346)||(28575511-28575644)
chr8 (213-266)||(10646591-10646644)
chr8 (214-266)||(40486454-40486506)
chr8 (265-351)||(39151457-39151542)
chr8 (273-346)||(10181002-10181074)
chr8 (265-307)||(26629193-26629235)
[»] scaffold1431 (1 HSPs)
scaffold1431 (213-359)||(31-177)
[»] chr2 (15 HSPs)
chr2 (212-353)||(3518906-3519047)
chr2 (214-359)||(39938170-39938315)
chr2 (215-359)||(23366790-23366934)
chr2 (214-359)||(1102503-1102648)
chr2 (214-341)||(37673887-37674014)
chr2 (213-353)||(12969877-12970017)
chr2 (242-359)||(1646317-1646432)
chr2 (291-353)||(22388273-22388335)
chr2 (273-351)||(14779838-14779914)
chr2 (262-351)||(18078104-18078193)
chr2 (214-266)||(34224379-34224431)
chr2 (273-329)||(35179097-35179153)
chr2 (264-341)||(39562037-39562112)
chr2 (262-351)||(19976380-19976468)
chr2 (272-351)||(32840312-32840394)
[»] chr5 (19 HSPs)
chr5 (214-353)||(12806991-12807130)
chr5 (214-353)||(25773649-25773788)
chr5 (209-359)||(30720624-30720774)
chr5 (212-359)||(10285189-10285336)
chr5 (214-359)||(40886742-40886887)
chr5 (214-359)||(36561231-36561376)
chr5 (213-353)||(37900762-37900902)
chr5 (225-353)||(7277560-7277688)
chr5 (252-353)||(25683366-25683467)
chr5 (213-348)||(16983257-16983393)
chr5 (211-351)||(734478-734617)
chr5 (262-351)||(30403101-30403191)
chr5 (209-339)||(23098386-23098508)
chr5 (211-351)||(11319556-11319696)
chr5 (213-351)||(39070882-39071020)
chr5 (274-351)||(1056422-1056498)
chr5 (214-263)||(15305216-15305265)
chr5 (211-322)||(11796448-11796559)
chr5 (273-351)||(16054173-16054249)
[»] scaffold0054 (1 HSPs)
scaffold0054 (213-353)||(45453-45593)
[»] scaffold1770 (1 HSPs)
scaffold1770 (214-359)||(170-307)
[»] scaffold0062 (1 HSPs)
scaffold0062 (233-353)||(403-521)
[»] scaffold0056 (1 HSPs)
scaffold0056 (272-351)||(70882-70961)
[»] scaffold0025 (1 HSPs)
scaffold0025 (280-353)||(65301-65375)
[»] scaffold0257 (1 HSPs)
scaffold0257 (214-266)||(23467-23519)


Alignment Details
Target: chr3 (Bit Score: 171; Significance: 9e-92; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 20 - 214
Target Start/End: Original strand, 11042495 - 11042689
Alignment:
Q  20 gcttgcatcgcgagtaggtcgtttacggttgctttgcgtatgcacaccattgttgcggatttgaagaattagggttagggttttggtttgaggatttggg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11042495 gcttgcatcgcgagtaggtcgtttacggttgctttgcgtatgcacaccattgttgcggatttgaagaattagggttagggttttggtttgaggatttggg 11042594  T
Q  120 tggggaatcgaatggcgaagagagaatttgatttggtctatgcgttgtttttattatattcttttttcttcgataaaagcattaatatgtttaat 214  Q
    ||||||||||||||| |||||||||||||| || ||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||    
T  11042595 tggggaatcgaatggtgaagagagaatttgcttcggtctatgcgttgttattattatattctgttttcttcgataaaaccattaatatgtttaat 11042689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 213 - 359
Target Start/End: Original strand, 13364842 - 13364988
Alignment:
Q  213 atactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtt 312  Q
    ||||||||||| ||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  13364842 atactccctccgtttcaaaatacatgttcattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtt 13364941  T
Q  313 ttctataatacccttaatcatttattatttcattttattttcttctc 359  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||    
T  13364942 ttctataatacccttaatcatttattatttcattttatttttttctc 13364988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 208 - 359
Target Start/End: Original strand, 198849 - 199000
Alignment:
Q  208 gtttaatactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgt 307  Q
    ||||| |||||||||| ||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||    
T  198849 gtttattactccctccgtttcaaaatacatgtccattttggagaaattgcactgaccaagaaaccaaataaattttgttatttttgatgaaaatatatgt 198948  T
Q  308 gtgttttctataatacccttaatcatttattatttcattttattttcttctc 359  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  198949 gtgttttctataatacccttaatcatttattatttcattttatttttttctc 199000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 214 - 359
Target Start/End: Complemental strand, 46694387 - 46694242
Alignment:
Q  214 tactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttt 313  Q
    |||||||||| ||||||| ||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  46694387 tactccctccgtttcaaaatacatgtcctttttggagaaattgcactaatcaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttt 46694288  T
Q  314 tctataatacccttaatcatttattatttcattttattttcttctc 359  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  46694287 tctataatacccttaatcatttattatttcattttatttttttctc 46694242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 213 - 359
Target Start/End: Complemental strand, 19241946 - 19241800
Alignment:
Q  213 atactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtt 312  Q
    ||||||||||| ||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  19241946 atactccctccgtttcaaaatacatgtccattttggtgaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatatgtgtgtt 19241847  T
Q  313 ttctataatacccttaatcatttattatttcattttattttcttctc 359  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||    
T  19241846 ttctataatacccttaatcatttattatttcattttacttttttctc 19241800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 210 - 359
Target Start/End: Original strand, 3383072 - 3383221
Alignment:
Q  210 ttaatactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgt 309  Q
    |||||||||| ||| ||||||| || ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3383072 ttaatactccttccgtttcaaaatatatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgt 3383171  T
Q  310 gttttctataatacccttaatcatttattatttcattttattttcttctc 359  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  3383172 gttttctataatacccttaaacatttattatttcattttatttttttctc 3383221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 214 - 359
Target Start/End: Original strand, 36881282 - 36881425
Alignment:
Q  214 tactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttt 313  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||    
T  36881282 tactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaata--tgtgtgttt 36881379  T
Q  314 tctataatacccttaatcatttattatttcattttattttcttctc 359  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||    
T  36881380 tctataatacccttaattatttattatttcattttatttttttctc 36881425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 214 - 359
Target Start/End: Complemental strand, 23088208 - 23088063
Alignment:
Q  214 tactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttt 313  Q
    |||||||||  ||||||| || ||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  23088208 tactccctctgtttcaaaatatatgtctattttgaagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttt 23088109  T
Q  314 tctataatacccttaatcatttattatttcattttattttcttctc 359  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  23088108 tctataatacccttaatcatttattatttcattttatttttttctc 23088063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 213 - 353
Target Start/End: Original strand, 29375137 - 29375277
Alignment:
Q  213 atactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtt 312  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  29375137 atactccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttcttatttttgatgaaaatatgtgtgtgtt 29375236  T
Q  313 ttctataatacccttaatcatttattatttcattttatttt 353  Q
    ||||||||||||||||| ||||||||||||| |||| ||||    
T  29375237 ttctataatacccttaaccatttattatttctttttttttt 29375277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 213 - 353
Target Start/End: Original strand, 43750136 - 43750276
Alignment:
Q  213 atactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtt 312  Q
    ||||||||| | ||||||| |||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||| ||| ||||||||    
T  43750136 atactcccttcgtttcaaaatacatgtccattttggagaaattggagtaaccaagaaaccaaataaattttgttatttttgatgaaattatatgtgtgtt 43750235  T
Q  313 ttctataatacccttaatcatttattatttcattttatttt 353  Q
    ||||||||||| ||||| |||||||||||||||| ||||||    
T  43750236 ttctataatacacttaaccatttattatttcattctatttt 43750276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 225 - 318
Target Start/End: Complemental strand, 32835222 - 32835129
Alignment:
Q  225 tttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctat 318  Q
    ||||||| |||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  32835222 tttcaaaatacatgtccattttggagaaattgcaataaccaagaaaacaaataaattttgttatttttgatgaaattatgtgtgtgttttctat 32835129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 213 - 335
Target Start/End: Original strand, 13702768 - 13702890
Alignment:
Q  213 atactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtt 312  Q
    ||||||| ||||||| ||| |||||| | ||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||| ||| ||| ||||    
T  13702768 atactccatccattttaaaatacatgcctattttggagaaattgcagtaaccaagaaaccaaataaattttgatatttttgatgaaattatatgtttgtt 13702867  T
Q  313 ttctataatacccttaatcattt 335  Q
    |||||||||||| |||| |||||    
T  13702868 ttctataatacctttaaccattt 13702890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 214 - 292
Target Start/End: Complemental strand, 27707441 - 27707363
Alignment:
Q  214 tactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttattttt 292  Q
    |||||||||| |||| || |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  27707441 tactccctccgtttcgaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttattttt 27707363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 272 - 351
Target Start/End: Complemental strand, 19897146 - 19897067
Alignment:
Q  272 caaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttatt 351  Q
    ||||||||||||||||||||| |||||| | | ||||| |||||||||||||||||| || |||||||||||||| ||||    
T  19897146 caaataaattttgttattttttatgaaattctttgtgttttttctataatacccttactcttttattatttcattctatt 19897067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 273 - 346
Target Start/End: Original strand, 37780996 - 37781069
Alignment:
Q  273 aaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcatt 346  Q
    ||||||||||| ||||||||||||||| | ||||||| |||||||||||||  |||| ||||||||||||||||    
T  37780996 aaataaattttattatttttgatgaaattctgtgtgttttttctataatactattaaccatttattatttcatt 37781069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 213 - 266
Target Start/End: Original strand, 12094581 - 12094634
Alignment:
Q  213 atactccctccatttcaaattacatgtccattttggagaaattgcactaaccaa 266  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||| |||||||    
T  12094581 atactccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaa 12094634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 233 - 299
Target Start/End: Complemental strand, 48820510 - 48820444
Alignment:
Q  233 tacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaa 299  Q
    |||||||  |||||||||||||| |  || |||| ||||||||||||||||||||||||||||||||    
T  48820510 tacatgtttattttggagaaattacggtatccaataaaccaaataaattttgttatttttgatgaaa 48820444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 359
Target Start/End: Complemental strand, 27707177 - 27707120
Alignment:
Q  302 atgtgtgtgttttctataatacccttaatcatttattatttcattttattttcttctc 359  Q
    |||| |||||||||||||||| |||||| ||||||||||||| ||||||||| |||||    
T  27707177 atgtatgtgttttctataatatccttaaccatttattatttctttttatttttttctc 27707120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 266
Target Start/End: Complemental strand, 44277509 - 44277456
Alignment:
Q  213 atactccctccatttcaaattacatgtccattttggagaaattgcactaaccaa 266  Q
    ||||||||||| ||||||| |||||||| ||||||||||||||||| |||||||    
T  44277509 atactccctccgtttcaaaatacatgtctattttggagaaattgcagtaaccaa 44277456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 19911509 - 19911561
Alignment:
Q  214 tactccctccatttcaaattacatgtccattttggagaaattgcactaaccaa 266  Q
    |||||||||| ||||||| ||||||| |||||||||||||||||| |||||||    
T  19911509 tactccctccgtttcaaaatacatgttcattttggagaaattgcagtaaccaa 19911561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 211 - 299
Target Start/End: Original strand, 37293434 - 37293522
Alignment:
Q  211 taatactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaa 299  Q
    ||||||||||||| ||||| | ||| ||||||||||| ||||||| |||  |||||  || ||||||||| |||| |||||||||||||    
T  37293434 taatactccctccgtttcacaatacttgtccattttgaagaaattacacataccaaggaatcaaataaatgttgtcatttttgatgaaa 37293522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 342
Target Start/End: Complemental strand, 1455367 - 1455297
Alignment:
Q  272 caaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattattt 342  Q
    |||||||||||||||||||||||| ||| ||| ||||| | ||||||||| | ||| | ||||||||||||    
T  1455367 caaataaattttgttatttttgataaaattatttgtgtttcttctataattctcttcaccatttattattt 1455297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 351
Target Start/End: Original strand, 54086577 - 54086690
Alignment:
Q  237 tgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcattta 336  Q
    ||||||||||| ||||||| |||   ||||  || ||||||||| |||| ||| ||||||||| | | ||| | |||||||||||||||||| ||| |||    
T  54086577 tgtccattttgaagaaattacacatgccaaggaatcaaataaatgttgtcattattgatgaaattctttgtattttttctataatacccttactca-tta 54086675  T
Q  337 ttatttcattttatt 351  Q
    |||||||||| ||||    
T  54086676 ttatttcattctatt 54086690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 38805245 - 38805297
Alignment:
Q  214 tactccctccatttcaaattacatgtccattttggagaaattgcactaaccaa 266  Q
    |||||||||| ||| ||| |||||||||||||| ||||||||||| |||||||    
T  38805245 tactccctccgttttaaaatacatgtccattttagagaaattgcagtaaccaa 38805297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 280 - 343
Target Start/End: Original strand, 17755221 - 17755284
Alignment:
Q  280 ttttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttc 343  Q
    |||| |||||||| |||||  ||| ||||| |||||||||||| | ||||||||||||||||||    
T  17755221 tttttttattttttatgaatttatttgtgttttttctataatatctttaatcatttattatttc 17755284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 280 - 343
Target Start/End: Original strand, 19056541 - 19056604
Alignment:
Q  280 ttttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttc 343  Q
    |||| |||||||| |||||  ||| ||||| |||||||||||| | ||||||||||||||||||    
T  19056541 tttttttattttttatgaatttatttgtgttttttctataatatctttaatcatttattatttc 19056604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 19912217 - 19912174
Alignment:
Q  212 aatactccctccatttcaaattacatgtccattttggagaaatt 255  Q
    |||||||||||| ||||||| |||||||||||||| ||||||||    
T  19912217 aatactccctccgtttcaaaatacatgtccattttagagaaatt 19912174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 38806384 - 38806341
Alignment:
Q  212 aatactccctccatttcaaattacatgtccattttggagaaatt 255  Q
    |||||||||||| ||||||| |||||||||||||| ||||||||    
T  38806384 aatactccctccgtttcaaaatacatgtccattttagagaaatt 38806341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 213 - 283
Target Start/End: Original strand, 48963155 - 48963223
Alignment:
Q  213 atactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaatttt 283  Q
    ||||||||||| ||||||| ||||| || |||||||||||||||  |||||||| ||| ||||||| ||||    
T  48963155 atactccctccgtttcaaaatacatatctattttggagaaattg--ctaaccaataaatcaaataattttt 48963223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 351
Target Start/End: Complemental strand, 18356053 - 18356007
Alignment:
Q  305 tgtgtgttttctataatacccttaatcatttattatttcattttatt 351  Q
    ||||| |||||||||||||||||| |||||||| |||||||| ||||    
T  18356053 tgtgttttttctataatacccttactcatttatcatttcattctatt 18356007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 351
Target Start/End: Original strand, 24064283 - 24064361
Alignment:
Q  273 aaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttatt 351  Q
    |||||||||||||||| ||| || ||| |   ||||| ||||||||||||||||||  |||||||||||| ||| ||||    
T  24064283 aaataaattttgttatattttataaaattcactgtgttttttctataatacccttacccatttattattttattctatt 24064361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 359
Target Start/End: Original strand, 26105079 - 26105176
Alignment:
Q  262 accaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttct-ataatacccttaatcatttattatttcattttattttcttctc 359  Q
    ||||| ||| ||||||||||||||||||||| ||||   | | | |||||||| | | ||||||||||| |||||||||||||||| |||||| |||||    
T  26105079 accaataaatcaaataaattttgttatttttaatgatttttttt-tgtgtttttttacaatacccttaaccatttattatttcattatatttttttctc 26105176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 351
Target Start/End: Complemental strand, 52805244 - 52805166
Alignment:
Q  273 aaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttatt 351  Q
    ||||||||||||| ||||||||||||| | | ||  | ||||||||||||| ||||  |||||||||||| ||| ||||    
T  52805244 aaataaattttgtcatttttgatgaaattgtttgcattttttctataatactcttacacatttattattttattatatt 52805166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 346
Target Start/End: Original strand, 6901655 - 6901696
Alignment:
Q  305 tgtgtgttttctataatacccttaatcatttattatttcatt 346  Q
    ||||| |||||| ||||||||||| |||||||||||||||||    
T  6901655 tgtgttttttctctaatacccttactcatttattatttcatt 6901696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 242
Target Start/End: Original strand, 13499331 - 13499363
Alignment:
Q  210 ttaatactccctccatttcaaattacatgtcca 242  Q
    |||||||||||||||||||||| ||||||||||    
T  13499331 ttaatactccctccatttcaaaatacatgtcca 13499363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 351
Target Start/End: Complemental strand, 53559858 - 53559750
Alignment:
Q  243 ttttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattattt 342  Q
    ||||| ||||||| |||  | ||| ||| ||||||||| |||||||||||||||||| | | ||||| || | ||  ||| |||||  | ||||||||||    
T  53559858 ttttgaagaaattacacatatcaagaaaacaaataaatgttgttatttttgatgaaattctctgtgttttatttacgatatccttacccgtttattattt 53559759  T
Q  343 cattttatt 351  Q
    |||||||||    
T  53559758 cattttatt 53559750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 131; Significance: 7e-68; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 213 - 359
Target Start/End: Original strand, 29260191 - 29260337
Alignment:
Q  213 atactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtt 312  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  29260191 atactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtt 29260290  T
Q  313 ttctataatacccttaatcatttattatttcattttattttcttctc 359  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||    
T  29260291 ttctataatacccttaatcatttattatttcattttatttttttctc 29260337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 213 - 353
Target Start/End: Original strand, 1605578 - 1605718
Alignment:
Q  213 atactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtt 312  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  1605578 atactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtt 1605677  T
Q  313 ttctataatacccttaatcatttattatttcattttatttt 353  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  1605678 ttctataatacccttaatcatttattatttcattttatttt 1605718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 225 - 359
Target Start/End: Complemental strand, 30734749 - 30734615
Alignment:
Q  225 tttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacc 324  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30734749 tttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacc 30734650  T
Q  325 cttaatcatttattatttcattttattttcttctc 359  Q
    ||||||||||||||||||||||||||||| |||||    
T  30734649 cttaatcatttattatttcattttatttttttctc 30734615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 214 - 359
Target Start/End: Original strand, 8626482 - 8626627
Alignment:
Q  214 tactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttt 313  Q
    |||||||||| ||||||| ||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  8626482 tactccctccgtttcaaaatacatgtccattttgaagaaattgcattaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttt 8626581  T
Q  314 tctataatacccttaatcatttattatttcattttattttcttctc 359  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  8626582 tctataatacccttaatcatttattatttcattttatttttttctc 8626627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 213 - 353
Target Start/End: Original strand, 13757207 - 13757347
Alignment:
Q  213 atactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtt 312  Q
    |||||| |||| ||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  13757207 atactctctccgtttcaaaatacatgtccattttggagaaattacactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtt 13757306  T
Q  313 ttctataatacccttaatcatttattatttcattttatttt 353  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  13757307 ttctataatacccttaatcaattattatttcattttatttt 13757347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 213 - 353
Target Start/End: Original strand, 7761300 - 7761438
Alignment:
Q  213 atactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtt 312  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||  ||||||||    
T  7761300 atactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaactaaataaattttgttatttttgatgaaaata--tgtgtgtt 7761397  T
Q  313 ttctataatacccttaatcatttattatttcattttatttt 353  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  7761398 ttctataatacccttaatcatttattatttcattttatttt 7761438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 233 - 353
Target Start/End: Complemental strand, 31559994 - 31559874
Alignment:
Q  233 tacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatca 332  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  31559994 tacatgtccattttggagaaattgcattaaccaaaaaatcaaataaattttgttatttttgatgaaaatatgtgtatgttttctgtaatacccttaatca 31559895  T
Q  333 tttattatttcattttatttt 353  Q
    |||||||||||||||| ||||    
T  31559894 tttattatttcattttttttt 31559874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 212 - 353
Target Start/End: Complemental strand, 15064973 - 15064832
Alignment:
Q  212 aatactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgt 311  Q
    |||||||||||| ||||||| |||||||||||||| |||||||||||  |||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  15064973 aatactccctccgtttcaaaatacatgtccattttagagaaattgcagcaaccaagaaaccaaataaattttgttatttttgatgaaattatgtgtgtgt 15064874  T
Q  312 tttctataatacccttaatcatttattatttcattttatttt 353  Q
    ||| |||| ||||||||| |||||||||||| ||| ||||||    
T  15064873 tttttatactacccttaaccatttattatttgattatatttt 15064832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 214 - 353
Target Start/End: Original strand, 8235624 - 8235763
Alignment:
Q  214 tactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttt 313  Q
    ||||||||| |||| ||| ||||||| ||||||| |||||||||| ||||||| |||| ||||||| |||||||||||| |||| | |||||||||||||    
T  8235624 tactccctctattttaaaatacatgtacattttgaagaaattgcagtaaccaagaaacgaaataaaatttgttattttttatgatattatgtgtgtgttt 8235723  T
Q  314 tctataatacccttaatcatttattatttcattttatttt 353  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  8235724 tctataatacccttaatcatttattatttcattctatttt 8235763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 214 - 359
Target Start/End: Original strand, 4129435 - 4129572
Alignment:
Q  214 tactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttt 313  Q
    |||||||||| ||||||| ||||| |||| ||||||||||||||| |||||        |||||||||||||||||||| ||||||||||||||||||||    
T  4129435 tactccctccgtttcaaaatacatatccactttggagaaattgcagtaacc--------aaataaattttgttattttttatgaaaatatgtgtgtgttt 4129526  T
Q  314 tctataatacccttaatcatttattatttcattttattttcttctc 359  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||    
T  4129527 tctataatacccttaaccatttattatttcattttatttttttctc 4129572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 213 - 359
Target Start/End: Original strand, 17942442 - 17942590
Alignment:
Q  213 atactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgtt--atttttgatgaaaatatgtgtgtg 310  Q
    ||||||||| | ||||||| |||||||||||||| ||||||||||| ||||||| ||||||||||  |||| ||  ||||||||||||| |||||| |||    
T  17942442 atactcccttcgtttcaaaatacatgtccatttttgagaaattgcagtaaccaagaaaccaaatatttttttttttatttttgatgaaattatgtgcgtg 17942541  T
Q  311 ttttctataatacccttaatcatttattatttcattttattttcttctc 359  Q
    || |||||||||||||||| ||||||||||||||||||||||| |||||    
T  17942542 ttctctataatacccttaaccatttattatttcattttatttttttctc 17942590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 220 - 329
Target Start/End: Complemental strand, 30734879 - 30734772
Alignment:
Q  220 ctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctata 319  Q
    |||| ||||||| ||||||||||||||| |||||||||| |||| |||||| |||||||||||||||||||||||||||| ||  |||||||||||||||    
T  30734879 ctccgtttcaaaatacatgtccattttgaagaaattgcagtaacaaaaaaatcaaataaattttgttatttttgatgaaatta--tgtgtgttttctata 30734782  T
Q  320 atacccttaa 329  Q
    ||||||||||    
T  30734781 atacccttaa 30734772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 262 - 344
Target Start/End: Original strand, 3798151 - 3798233
Alignment:
Q  262 accaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttca 344  Q
    ||||||||| ||||||||||||||||||||| |||||  ||| ||||| |||||||||| |||||||  ||||||||||||||    
T  3798151 accaaaaaatcaaataaattttgttatttttcatgaagttatttgtgttttttctataacacccttacacatttattatttca 3798233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 272 - 351
Target Start/End: Complemental strand, 21277652 - 21277574
Alignment:
Q  272 caaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttatt 351  Q
    ||||||||||||||||||||| |||||||| | ||||| |||||||||||||||||||| ||||| || |||||| ||||    
T  21277652 caaataaattttgttattttttatgaaaatttatgtgt-ttttctataatacccttaattatttagtacttcattctatt 21277574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 209 - 266
Target Start/End: Complemental strand, 19996773 - 19996716
Alignment:
Q  209 tttaatactccctccatttcaaattacatgtccattttggagaaattgcactaaccaa 266  Q
    ||||||||||||||| ||||||| |||||||| ||||||||||||||||| |||||||    
T  19996773 tttaatactccctccgtttcaaaatacatgtctattttggagaaattgcagtaaccaa 19996716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 263 - 351
Target Start/End: Original strand, 14287038 - 14287125
Alignment:
Q  263 ccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttatt 351  Q
    |||| ||| ||||||||||||||||||||| |||||| | ||||  | ||||||||||||||||||  | |||||||||||||||||||    
T  14287038 ccaataaatcaaataaattttgttattttttatgaaattctgtgctt-ttttctataatacccttacccctttattatttcattttatt 14287125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 346
Target Start/End: Complemental strand, 11370704 - 11370630
Alignment:
Q  272 caaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcatt 346  Q
    |||||||||||||||||||||||||| | |   ||||| |||| |||||||| ||||| ||||||||||| ||||    
T  11370704 caaataaattttgttatttttgatgatattcattgtgttttttttataatactcttaaccatttattattccatt 11370630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 255
Target Start/End: Original strand, 19996321 - 19996363
Alignment:
Q  213 atactccctccatttcaaattacatgtccattttggagaaatt 255  Q
    ||||||||||| ||||||| |||||||||||||| ||||||||    
T  19996321 atactccctccgtttcaaaatacatgtccattttagagaaatt 19996363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 305
Target Start/End: Complemental strand, 33845502 - 33845469
Alignment:
Q  272 caaataaattttgttatttttgatgaaaatatgt 305  Q
    |||||||||||||||||||||||||||| |||||    
T  33845502 caaataaattttgttatttttgatgaaattatgt 33845469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 351
Target Start/End: Complemental strand, 30235487 - 30235447
Alignment:
Q  311 ttttctataatacccttaatcatttattatttcattttatt 351  Q
    ||||||||| ||| |||||||||||||||||||||| ||||    
T  30235487 ttttctatattactcttaatcatttattatttcattctatt 30235447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 130; Significance: 3e-67; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 214 - 359
Target Start/End: Complemental strand, 23045556 - 23045411
Alignment:
Q  214 tactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttt 313  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  23045556 tactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttt 23045457  T
Q  314 tctataatacccttaatcatttattatttcattttattttcttctc 359  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  23045456 tctataatacccttaatcatttattatttcattttatttttttctc 23045411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 213 - 359
Target Start/End: Complemental strand, 40783935 - 40783789
Alignment:
Q  213 atactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtt 312  Q
    ||||||||||| ||||||| ||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  40783935 atactccctccgtttcaaaatacatgttcattttggagaaattgcactaaccaagaaatcaaataaattttgttatttttgatgaaaatatgtgtgtgtt 40783836  T
Q  313 ttctataatacccttaatcatttattatttcattttattttcttctc 359  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||    
T  40783835 ttctataatacccttaatcatttattatttcattttatttttttctc 40783789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 208 - 349
Target Start/End: Original strand, 284327 - 284468
Alignment:
Q  208 gtttaatactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgt 307  Q
    ||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||    
T  284327 gtttattactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatatgt 284426  T
Q  308 gtgttttctataatacccttaatcatttattatttcatttta 349  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  284427 gtgttttctataatacccttaatcatttattatttcatttta 284468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 214 - 353
Target Start/End: Original strand, 321626 - 321765
Alignment:
Q  214 tactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttt 313  Q
    |||||||||| ||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  321626 tactccctccgtttcaaaatacatgttcattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttt 321725  T
Q  314 tctataatacccttaatcatttattatttcattttatttt 353  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  321726 tctataatatccttaatcatttattatttcattttatttt 321765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 213 - 353
Target Start/End: Original strand, 23526239 - 23526379
Alignment:
Q  213 atactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtt 312  Q
    ||||||| ||||||||||| ||||||| |||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  23526239 atactccttccatttcaaaatacatgttcattttggagaaattgcagtaatcaagaaaccaaataaattttgttatttttgatgaaattatgtgtgtgtt 23526338  T
Q  313 ttctataatacccttaatcatttattatttcattttatttt 353  Q
    ||||||||||||||||| |||||||||||||||| ||||||    
T  23526339 ttctataatacccttaaccatttattatttcattctatttt 23526379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 214 - 353
Target Start/End: Complemental strand, 24772182 - 24772043
Alignment:
Q  214 tactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttt 313  Q
    |||||||||| ||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||    
T  24772182 tactccctccgtttcaaaatacatgtccattttgaagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaattatgtgtgtattt 24772083  T
Q  314 tctataatacccttaatcatttattatttcattttatttt 353  Q
    |||||||||||||||| |||||||||||| ||| ||||||    
T  24772082 tctataatacccttaaccatttattattttattctatttt 24772043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 214 - 359
Target Start/End: Complemental strand, 47038127 - 47037984
Alignment:
Q  214 tactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttt 313  Q
    |||||| ||| ||||||| |||||||||||||||||||||||| |||||| || ||| ||||||||||||||||||||||||||||||||||  ||||||    
T  47038127 tactccatccgtttcaaaatacatgtccattttggagaaattgtactaactaagaaatcaaataaattttgttatttttgatgaaaatatgt--gtgttt 47038030  T
Q  314 tctataatacccttaatcatttattatttcattttattttcttctc 359  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  47038029 tctataatacccttaatcatttattatttcattttatttttttctc 47037984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 215 - 353
Target Start/End: Complemental strand, 27211240 - 27211102
Alignment:
Q  215 actccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 314  Q
    ||||||||| ||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||| ||| ||||||||||    
T  27211240 actccctccgtttcaaaatacatgtccattttggagaaattgcaataaccaagaaaccaaataaattttgttatttttgaggaaattatatgtgtgtttt 27211141  T
Q  315 ctataatacccttaatcatttattatttcattttatttt 353  Q
    ||||||||||||||| |||||||||||| ||| ||||||    
T  27211140 ctataatacccttaaccatttattattttattctatttt 27211102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 212 - 353
Target Start/End: Original strand, 46771635 - 46771776
Alignment:
Q  212 aatactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgt 311  Q
    |||||||  ||| ||||||| |||||||||||||||||||||||||| ||||||| |||  ||||||||||||||||||||||||||| |||||||||||    
T  46771635 aatactctatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaattaaataaattttgttatttttgatgaaattatgtgtgtgt 46771734  T
Q  312 tttctataatacccttaatcatttattatttcattttatttt 353  Q
    |||||||||||||||||| |||||||| ||||||| ||||||    
T  46771735 tttctataatacccttaaccatttattttttcattctatttt 46771776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 234 - 353
Target Start/End: Original strand, 33082765 - 33082884
Alignment:
Q  234 acatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcat 333  Q
    ||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||    
T  33082765 acatgtctattttggagaaattgcactaaccaagaaatcaaataaattttgttatttttgatgaaattatgtgtgtattttctataatacccttaaccat 33082864  T
Q  334 ttattatttcattttatttt 353  Q
    ||||||||| ||| ||||||    
T  33082865 ttattattttattctatttt 33082884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 224 - 353
Target Start/End: Complemental strand, 52037387 - 52037260
Alignment:
Q  224 atttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatac 323  Q
    |||| ||| |||||||||||||| ||||||||||| || ||||||||||||||||||||| ||||||||||| ||| ||  |||||||||||||||||||    
T  52037387 attttaaaatacatgtccattttagagaaattgcattatccaaaaaaccaaataaattttattatttttgataaaatta--tgtgtgttttctataatac 52037290  T
Q  324 ccttaatcatttattatttcattttatttt 353  Q
     ||||| |||||||||||||||| ||||||    
T  52037289 tcttaaccatttattatttcattctatttt 52037260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 272 - 353
Target Start/End: Original strand, 1749365 - 1749446
Alignment:
Q  272 caaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttatttt 353  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||||| | |||| |||||||||||| ||| ||||||    
T  1749365 caaataaattttgttatttttgatgaaattatatgtgtgttttctataatagcattaaccatttattattttattctatttt 1749446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 273 - 355
Target Start/End: Original strand, 7765072 - 7765154
Alignment:
Q  273 aaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttattttct 355  Q
    ||||||||||||||||||||| ||||| ||| |||||||||||  |||||||| ||| |||||||||||| ||||| ||||||    
T  7765072 aaataaattttgttatttttggtgaaattatatgtgtgttttccgtaatacccataaccatttattatttaatttttttttct 7765154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 272 - 342
Target Start/End: Complemental strand, 1838046 - 1837978
Alignment:
Q  272 caaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattattt 342  Q
    |||||||||||||||||||||||||||| ||  ||||| ||||||||||||||||||  ||||||||||||    
T  1838046 caaataaattttgttatttttgatgaaatta--tgtgttttttctataatacccttacccatttattattt 1837978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 212 - 266
Target Start/End: Original strand, 9588668 - 9588722
Alignment:
Q  212 aatactccctccatttcaaattacatgtccattttggagaaattgcactaaccaa 266  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||| |||||||    
T  9588668 aatactccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaa 9588722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 214 - 351
Target Start/End: Complemental strand, 51065033 - 51064893
Alignment:
Q  214 tactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttt 313  Q
    |||||||||| ||||| | ||| ||||||||||  ||||||| |||  |||||  || ||||||||| |||| ||||||||||||| | | ||||| |||    
T  51065033 tactccctccgtttcacaatacttgtccattttaaagaaattacacataccaaggaatcaaataaatgttgtcatttttgatgaaattctttgtgttttt 51064934  T
Q  314 tctat---aatacccttaatcatttattatttcattttatt 351  Q
    |||||   |||||||||| || |||||||||||||| ||||    
T  51064933 tctataataatacccttactcgtttattatttcattatatt 51064893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 213 - 266
Target Start/End: Original strand, 3943059 - 3943112
Alignment:
Q  213 atactccctccatttcaaattacatgtccattttggagaaattgcactaaccaa 266  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||| |||||||    
T  3943059 atactccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaa 3943112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 41959078 - 41959130
Alignment:
Q  214 tactccctccatttcaaattacatgtccattttggagaaattgcactaaccaa 266  Q
    |||||||||| ||||||| |||||||||||||||||||||||||| |||||||    
T  41959078 tactccctccgtttcaaaatacatgtccattttggagaaattgcaataaccaa 41959130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 262 - 351
Target Start/End: Complemental strand, 31004012 - 31003926
Alignment:
Q  262 accaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttatt 351  Q
    ||||| ||| ||||||||||||   |||||| |||||| ||||||| | ||||||||||||||||||| |||||||||||| ||| ||||    
T  31004012 accaagaaatcaaataaatttt---atttttaatgaaagtatgtgtattttttctataatacccttaaccatttattatttaattctatt 31003926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 262 - 336
Target Start/End: Original strand, 3657125 - 3657199
Alignment:
Q  262 accaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcattta 336  Q
    ||||| ||| ||||||||||||||||||||| |||||| | ||| ||| |||||||||||| |||||| ||||||    
T  3657125 accaagaaatcaaataaattttgttatttttaatgaaattttgtatgttttttctataataaccttaaccattta 3657199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 273 - 351
Target Start/End: Original strand, 18396754 - 18396832
Alignment:
Q  273 aaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttatt 351  Q
    |||||||||||||||||||| |||||| ||||||||  ||||||||||||   |||| |||| ||||||||||| ||||    
T  18396754 aaataaattttgttattttttatgaaattatgtgtggtttttctataatatatttaaccattcattatttcattctatt 18396832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 262 - 351
Target Start/End: Original strand, 52478016 - 52478103
Alignment:
Q  262 accaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttatt 351  Q
    ||||| ||| ||||||||||||||||||||||||||||   | ||||| |||||||||||| ||||||  |||||| |||||||| ||||    
T  52478016 accaagaaatcaaataaattttgttatttttgatgaaa--ttttgtgttttttctataataaccttaaaaatttatcatttcattctatt 52478103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 282 - 351
Target Start/End: Complemental strand, 31061662 - 31061594
Alignment:
Q  282 ttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttatt 351  Q
    ||||||||||| |||||| ||||||||| ||||| ||||||||| ||| |||||||||||||||| ||||    
T  31061662 ttgttattttttatgaaattatgtgtgttttttccataataccc-taaccatttattatttcattatatt 31061594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 274 - 339
Target Start/End: Complemental strand, 40562797 - 40562733
Alignment:
Q  274 aataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttatta 339  Q
    |||||||||||||||||||||| ||| ||| | |||||||||||||||||| |||| |||||||||    
T  40562797 aataaattttgttatttttgat-aaattatatatgtgttttctataataccattaaccatttatta 40562733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 255
Target Start/End: Original strand, 44227844 - 44227889
Alignment:
Q  210 ttaatactccctccatttcaaattacatgtccattttggagaaatt 255  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||    
T  44227844 ttaatactccctccgtttcaaaatacatgtccattttggagaaatt 44227889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 266
Target Start/End: Complemental strand, 44228282 - 44228229
Alignment:
Q  213 atactccctccatttcaaattacatgtccattttggagaaattgcactaaccaa 266  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||  |||||||    
T  44228282 atactacctccatttcaaaatacatgtccattttggagaaattgctgtaaccaa 44228229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 214 - 266
Target Start/End: Complemental strand, 13985044 - 13984992
Alignment:
Q  214 tactccctccatttcaaattacatgtccattttggagaaattgcactaaccaa 266  Q
    |||||| ||| ||||||| |||||||||||||||||||||||||| |||||||    
T  13985044 tactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaa 13984992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 272 - 351
Target Start/End: Complemental strand, 27143231 - 27143151
Alignment:
Q  272 caaataaattttgttatttttgatgaaaatatgtgtg-tgttttctataatacccttaatcatttattatttcattttatt 351  Q
    ||||||||||||||||||||||| |||| |  ||| | | ||||||||||||  |||||||||||||||||||||| ||||    
T  27143231 caaataaattttgttatttttgaggaaattccgtgagtttttttctataatattcttaatcatttattatttcattctatt 27143151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 343
Target Start/End: Complemental strand, 40261501 - 40261419
Alignment:
Q  262 accaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtg-tgttttctataatacccttaatcatttattatttc 343  Q
    ||||| ||| |||||||||||||||| ||||||||||| |  ||||| | |||||||||||| | |||| |||||||||||||    
T  40261501 accaagaaatcaaataaattttgttaattttgatgaaattgcgtgtgtttttttctataatatcattaaccatttattatttc 40261419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 255
Target Start/End: Complemental strand, 41959853 - 41959809
Alignment:
Q  211 taatactccctccatttcaaattacatgtccattttggagaaatt 255  Q
    ||||||||||||| ||||||| |||||||||||||| ||||||||    
T  41959853 taatactccctccgtttcaaaatacatgtccattttagagaaatt 41959809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 255
Target Start/End: Complemental strand, 3943809 - 3943763
Alignment:
Q  209 tttaatactccctccatttcaaattacatgtccattttggagaaatt 255  Q
    |||| |||||||||| ||||||| |||||||||||||| ||||||||    
T  3943809 tttagtactccctccgtttcaaaatacatgtccattttagagaaatt 3943763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 351
Target Start/End: Complemental strand, 34458950 - 34458863
Alignment:
Q  262 accaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttatt 351  Q
    ||||| ||| ||||||||||||  ||||||| |||||| | ||||| |  ||||||||||| ||||| | ||||||||||||||| ||||    
T  34458950 accaagaaatcaaataaatttttctattttttatgaaattctgtgttt--tttctataataaccttactaatttattatttcattctatt 34458863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 280
Target Start/End: Complemental strand, 40564285 - 40564241
Alignment:
Q  236 atgtccattttggagaaattgcactaaccaaaaaaccaaataaat 280  Q
    |||||||||||||| |||| ||| ||||||| |||||||||||||    
T  40564285 atgtccattttggaaaaatcgcagtaaccaagaaaccaaataaat 40564241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 129; Significance: 1e-66; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 213 - 353
Target Start/End: Original strand, 10981507 - 10981647
Alignment:
Q  213 atactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtt 312  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  10981507 atactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtt 10981606  T
Q  313 ttctataatacccttaatcatttattatttcattttatttt 353  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  10981607 ttctataatacccttaatcatttattatttcattttatttt 10981647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 211 - 359
Target Start/End: Original strand, 27813808 - 27813956
Alignment:
Q  211 taatactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtg 310  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  27813808 taatactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtatgtg 27813907  T
Q  311 ttttctataatacccttaatcatttattatttcattttattttcttctc 359  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  27813908 ttttctataatacccttaatcatttattatttcattttatttttttctc 27813956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 216 - 359
Target Start/End: Complemental strand, 36453399 - 36453256
Alignment:
Q  216 ctccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 315  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||    
T  36453399 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgttttttc 36453300  T
Q  316 tataatacccttaatcatttattatttcattttattttcttctc 359  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  36453299 tataatacccttaatcatttattatttcattttatttttttctc 36453256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 214 - 353
Target Start/End: Original strand, 40348960 - 40349099
Alignment:
Q  214 tactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttt 313  Q
    |||||| ||| ||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  40348960 tactccttccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaatcaaataaattttgttatttttgatgaaaatatgtgtgtgttt 40349059  T
Q  314 tctataatacccttaatcatttattatttcattttatttt 353  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  40349060 tctataatacccttaatcatttattatttcattttatttt 40349099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 214 - 353
Target Start/End: Original strand, 47110451 - 47110588
Alignment:
Q  214 tactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttt 313  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||  |||||||||    
T  47110451 tactccctccatttcaaaatacatgtccattttggagaaattgcactaaccaagaaacaaaataaattttgttatttttgatgaaaata--tgtgtgttt 47110548  T
Q  314 tctataatacccttaatcatttattatttcattttatttt 353  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  47110549 tctataatacccttaatcatttattattttattttatttt 47110588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 214 - 359
Target Start/End: Complemental strand, 25614628 - 25614485
Alignment:
Q  214 tactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttt 313  Q
    |||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  25614628 tactccttccgtttcaaaatacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgt--gtgttt 25614531  T
Q  314 tctataatacccttaatcatttattatttcattttattttcttctc 359  Q
    |||  ||||||||||||||||||||||||||||||||||| |||||    
T  25614530 tctgaaatacccttaatcatttattatttcattttatttttttctc 25614485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 262 - 346
Target Start/End: Original strand, 3091565 - 3091649
Alignment:
Q  262 accaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcatt 346  Q
    ||||||||| |||||||||||||||||||||||||||| | | ||||| ||||||||||||||||||| ||||||||||||||||    
T  3091565 accaaaaaatcaaataaattttgttatttttgatgaaattctttgtgttttttctataatacccttaaccatttattatttcatt 3091649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 274 - 353
Target Start/End: Complemental strand, 27942256 - 27942177
Alignment:
Q  274 aataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttatttt 353  Q
    |||||||||| |||||||| |||| | ||||||||| |||||||||||||| |||| |||||||||||||||| ||||||    
T  27942256 aataaatttttttatttttaatgagattatgtgtgttttttctataatacctttaaccatttattatttcattctatttt 27942177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 272 - 346
Target Start/End: Complemental strand, 7743615 - 7743542
Alignment:
Q  272 caaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcatt 346  Q
    |||||||||||||||||||||||||||| ||||||| |  ||||||||||||| ||||| |||||||||||||||    
T  7743615 caaataaattttgttatttttgatgaaattatgtgt-ttctttctataataccgttaattatttattatttcatt 7743542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 262 - 343
Target Start/End: Original strand, 16360432 - 16360511
Alignment:
Q  262 accaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttc 343  Q
    |||| |||| |||||||||||||||||||||||||||| | ||||| |  |||||||||||||||||| |||||||||||||    
T  16360432 accagaaaatcaaataaattttgttatttttgatgaaattctgtgttt--tttctataatacccttaaccatttattatttc 16360511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 213 - 266
Target Start/End: Complemental strand, 2911602 - 2911549
Alignment:
Q  213 atactccctccatttcaaattacatgtccattttggagaaattgcactaaccaa 266  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  2911602 atactccctccatttcaaaatacatgtccattttggagaaattgcagtaaccaa 2911549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 210 - 266
Target Start/End: Complemental strand, 25060190 - 25060134
Alignment:
Q  210 ttaatactccctccatttcaaattacatgtccattttggagaaattgcactaaccaa 266  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||    
T  25060190 ttaatactccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaa 25060134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 262 - 353
Target Start/End: Complemental strand, 3498983 - 3498892
Alignment:
Q  262 accaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttatttt 353  Q
    ||||||||  ||||| ||||||||||||||| |||||| | | ||| | |||||||||||||  |||| |||||||||||||||||||||||    
T  3498983 accaaaaattcaaattaattttgttattttttatgaaattttttgtatcttttctataatacttttaaccatttattatttcattttatttt 3498892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 273 - 351
Target Start/End: Original strand, 16662155 - 16662231
Alignment:
Q  273 aaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttatt 351  Q
    |||||||||||||||||||||||||||  || ||||| |||| |||||||||||||| |||||||||||| ||| ||||    
T  16662155 aaataaattttgttatttttgatgaaa--atttgtgttttttttataatacccttaaccatttattattttattatatt 16662231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 273 - 351
Target Start/End: Original strand, 17636515 - 17636591
Alignment:
Q  273 aaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttatt 351  Q
    |||||||||||||||||||||||||||  || ||||| |||| |||||||||||||| |||||||||||| ||| ||||    
T  17636515 aaataaattttgttatttttgatgaaa--atttgtgttttttttataatacccttaaccatttattattttattatatt 17636591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 351
Target Start/End: Original strand, 37983179 - 37983289
Alignment:
Q  237 tgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcattta 336  Q
    |||||||||||  |||||| |||  | ||| ||| ||||||||||||||||||||||||||||     | | |||||| ||||||||| |||| ||||||    
T  37983179 tgtccattttgaggaaattacacatatcaagaaatcaaataaattttgttatttttgatgaaa----ttttatgttttttataatacctttaaccattta 37983274  T
Q  337 ttatttcattttatt 351  Q
    |||||||||| ||||    
T  37983275 ttatttcattatatt 37983289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 342
Target Start/End: Original strand, 28200298 - 28200335
Alignment:
Q  305 tgtgtgttttctataatacccttaatcatttattattt 342  Q
    ||||| |||||||||||| |||||||||||||||||||    
T  28200298 tgtgttttttctataatatccttaatcatttattattt 28200335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 129; Significance: 1e-66; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 213 - 353
Target Start/End: Original strand, 25704650 - 25704790
Alignment:
Q  213 atactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtt 312  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  25704650 atactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtt 25704749  T
Q  313 ttctataatacccttaatcatttattatttcattttatttt 353  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  25704750 ttctataatacccttaatcatttattatttcattttatttt 25704790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 212 - 359
Target Start/End: Complemental strand, 24706526 - 24706379
Alignment:
Q  212 aatactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgt 311  Q
    |||||||| ||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  24706526 aatactccatccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgt 24706427  T
Q  312 tttctataatacccttaatcatttattatttcattttattttcttctc 359  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||    
T  24706426 tttctataatacccttaatcatttattatttcattttatttttttctc 24706379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 213 - 359
Target Start/End: Complemental strand, 40122763 - 40122617
Alignment:
Q  213 atactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtt 312  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40122763 atactccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtt 40122664  T
Q  313 ttctataatacccttaatcatttattatttcattttattttcttctc 359  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||    
T  40122663 ttctataatacccttaaccatttattatttcattttatttttttctc 40122617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 213 - 353
Target Start/End: Original strand, 12071560 - 12071700
Alignment:
Q  213 atactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtt 312  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  12071560 atactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaataaactaaataaattttgttatttttgatgaaaatatgtgtgtgtt 12071659  T
Q  313 ttctataatacccttaatcatttattatttcattttatttt 353  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  12071660 ttctataatacccttaatcatttattatttcattttatttt 12071700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 213 - 353
Target Start/End: Original strand, 21310424 - 21310564
Alignment:
Q  213 atactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtt 312  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  21310424 atactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtt 21310523  T
Q  313 ttctataatacccttaatcatttattatttcattttatttt 353  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  21310524 ttctataatacccttaatcatttattatttcattttttttt 21310564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 213 - 359
Target Start/End: Original strand, 14261043 - 14261189
Alignment:
Q  213 atactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtt 312  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  14261043 atactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgataaaaatatgtgtgtgtt 14261142  T
Q  313 ttctataatacccttaatcatttattatttcattttattttcttctc 359  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||    
T  14261143 ttctataatacccttaataatttattatttcattttatttttttctc 14261189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 213 - 359
Target Start/End: Original strand, 44568836 - 44568982
Alignment:
Q  213 atactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtt 312  Q
    ||||||| ||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  44568836 atactccttccgtttcaaaatacatgtccattttgaagaaattgcactaaccaaaaaaccaaataaattttgttattttttatgaaaatatgtgtgtgtt 44568935  T
Q  313 ttctataatacccttaatcatttattatttcattttattttcttctc 359  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||    
T  44568936 ttctataatacccttaatcatttattatttcattttatttttttctc 44568982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 213 - 353
Target Start/End: Complemental strand, 22321545 - 22321405
Alignment:
Q  213 atactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtt 312  Q
    ||||||| ||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  22321545 atactccttccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttattttttatgaaaatatgtgtgtgtt 22321446  T
Q  313 ttctataatacccttaatcatttattatttcattttatttt 353  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  22321445 ttctataatacccttaatcatttattatttcattttatttt 22321405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 211 - 359
Target Start/End: Complemental strand, 21661815 - 21661667
Alignment:
Q  211 taatactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtg 310  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  21661815 taatactccctccctttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtg 21661716  T
Q  311 ttttctataatacccttaatcatttattatttcattttattttcttctc 359  Q
    |||||||||||||| |||| ||||||||||||||||||||||| |||||    
T  21661715 ttttctataatacctttaaccatttattatttcattttatttttttctc 21661667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 211 - 359
Target Start/End: Complemental strand, 21670579 - 21670431
Alignment:
Q  211 taatactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtg 310  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  21670579 taatactccctccctttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaatttttttatttttgatgaaaatatgtgtgtg 21670480  T
Q  311 ttttctataatacccttaatcatttattatttcattttattttcttctc 359  Q
    |||||||||||||| |||| ||||||||||||||||||||||| |||||    
T  21670479 ttttctataatacctttaaccatttattatttcattttatttttttctc 21670431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 214 - 353
Target Start/End: Complemental strand, 34324860 - 34324720
Alignment:
Q  214 tactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaat-aaattttgttatttttgatgaaaatatgtgtgtgtt 312  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||    
T  34324860 tactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaactaaattaaattttgttatttttgatgaaaatatgtgtgtgtt 34324761  T
Q  313 ttctataatacccttaatcatttattatttcattttatttt 353  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  34324760 ttctataatacccttaatcatttattatttcattttatttt 34324720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 212 - 359
Target Start/End: Original strand, 50767862 - 50768009
Alignment:
Q  212 aatactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgt 311  Q
    |||||||  ||| ||||||| ||||| | |||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||    
T  50767862 aatactcattccgtttcaaaatacatattcattttagagaaattgcactaatcaagaaaccaaataaattttgttatttttgatgaaaatatatgtgtgt 50767961  T
Q  312 tttctataatacccttaatcatttattatttcattttattttcttctc 359  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||||    
T  50767962 tttctataatacccttaataatttattatttcattttatttttttctc 50768009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 209 - 353
Target Start/End: Complemental strand, 20249294 - 20249151
Alignment:
Q  209 tttaatactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtg 308  Q
    |||| ||||| |||| ||||||| ||||||||||||||||| |||||| | ||||||| ||||||||||||||||||||||||||| |||| ||||||||    
T  20249294 tttattactctctccgtttcaaaatacatgtccattttggataaattgtattaaccaagaaaccaaataaattttgttatttttgaagaaattatgtgtg 20249195  T
Q  309 tgttttctataatacccttaatcatttattatttcattttatttt 353  Q
    || |||||||||||||||||| |||||||||||| ||| ||||||    
T  20249194 tg-tttctataatacccttaaccatttattattttattctatttt 20249151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 216 - 353
Target Start/End: Original strand, 31892240 - 31892373
Alignment:
Q  216 ctccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 315  Q
    |||||||| | ||||| ||||||| ||||||  |||||||||| ||||||| ||| |||||||||||| ||||||||||||||| ||    |||||||||    
T  31892240 ctccctccgtatcaaaatacatgttcattttaaagaaattgcagtaaccaagaaatcaaataaattttattatttttgatgaaatta----tgtgttttc 31892335  T
Q  316 tataatacccttaatcatttattatttcattttatttt 353  Q
    ||||||||| || | |||||||||||||||| ||||||    
T  31892336 tataatacctttgaccatttattatttcattctatttt 31892373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 244 - 329
Target Start/End: Original strand, 1988065 - 1988150
Alignment:
Q  244 tttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaa 329  Q
    ||||||||||||||| |||| || ||| |||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||    
T  1988065 tttggagaaattgcagtaactaagaaatcaaataaattttattatttttgatgaaattatgtatgtgttttctataatacccttaa 1988150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 262 - 351
Target Start/End: Complemental strand, 20714577 - 20714488
Alignment:
Q  262 accaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtg-ttttctataatacccttaatcatttattatttcattttatt 351  Q
    ||||| ||| |||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||| |||||||||||||||| ||||    
T  20714577 accaataaatcaaataaattttgttatttttgatgaaactatgtgtgtgtttttctataata-ccttaaccatttattatttcattatatt 20714488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 268 - 351
Target Start/End: Original strand, 32543535 - 32543617
Alignment:
Q  268 aaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttatt 351  Q
    ||||||||||| |||||||| ||||||||||| | | ||||| |||| ||||||||||||||||||||||||||||||||||||    
T  32543535 aaaccaaataatttttgttaattttgatgaaattctttgtgtttttt-tataatacccttaatcatttattatttcattttatt 32543617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 272 - 346
Target Start/End: Complemental strand, 6129167 - 6129093
Alignment:
Q  272 caaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcatt 346  Q
    |||||||||||||||||||||||| ||| | | ||| | ||||||| ||||||||||||||||||||||||||||    
T  6129167 caaataaattttgttatttttgataaaattctttgtattttttctacaatacccttaatcatttattatttcatt 6129093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 239 - 351
Target Start/End: Original strand, 19692748 - 19692860
Alignment:
Q  239 tccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttatt 338  Q
    ||||||||| |||||||  ||  ||||| ||| ||||||||| |||| |||||| |||||| | | ||||| |||||||||||| ||||| |||||||||    
T  19692748 tccattttgaagaaattatacataccaagaaatcaaataaatgttgtcattttttatgaaattctttgtgttttttctataatatccttactcatttatt 19692847  T
Q  339 atttcattttatt 351  Q
    |||||||| ||||    
T  19692848 atttcattctatt 19692860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 239 - 351
Target Start/End: Original strand, 19703333 - 19703445
Alignment:
Q  239 tccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttatt 338  Q
    ||||||||| |||||||  ||  ||||| ||| ||||||||| |||| |||||| |||||| | | ||||| |||||||||||| ||||| |||||||||    
T  19703333 tccattttgaagaaattatacataccaagaaatcaaataaatgttgtcattttttatgaaattctttgtgttttttctataatatccttactcatttatt 19703432  T
Q  339 atttcattttatt 351  Q
    |||||||| ||||    
T  19703433 atttcattctatt 19703445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 214 - 343
Target Start/End: Complemental strand, 26676843 - 26676714
Alignment:
Q  214 tactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttt 313  Q
    ||||| |||| ||||| | ||| | ||||||||| ||||||| |||  |||||  || ||||||||| |||| |||||| |||||| | |  |||| |||    
T  26676843 tactctctccgtttcacaatacttatccattttgaagaaattacacataccaaggaatcaaataaatgttgtcattttttatgaaattcttcgtgttttt 26676744  T
Q  314 tctataatacccttaatcatttattatttc 343  Q
    ||||||||||||||| ||||||||||||||    
T  26676743 tctataatacccttactcatttattatttc 26676714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 274 - 337
Target Start/End: Complemental strand, 34284234 - 34284171
Alignment:
Q  274 aataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttat 337  Q
    |||||||||||||| ||||||||||| ||| ||| | |||||||||||||||||||| ||||||    
T  34284234 aataaattttgttacttttgatgaaactatttgtattttttctataatacccttaattatttat 34284171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 351
Target Start/End: Complemental strand, 18507472 - 18507404
Alignment:
Q  282 ttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttatt 351  Q
    |||||||||||||||||| | ||||||| |||||||||||| |||| |  ||||||||||||||| ||||    
T  18507472 ttgttatttttgatgaaattttgtgtgttttttctataata-ccttgacaatttattatttcattatatt 18507404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 262 - 351
Target Start/End: Original strand, 48652268 - 48652356
Alignment:
Q  262 accaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttatt 351  Q
    ||||| ||| |||||||||||||||||||||||||||| | | ||| | |||||| ||| ||  ||| ||||||||||||||||| ||||    
T  48652268 accaagaaatcaaataaattttgttatttttgatgaaattctttgtat-ttttctttaacacatttactcatttattatttcattatatt 48652356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 353
Target Start/End: Original strand, 21064834 - 21064899
Alignment:
Q  286 tatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttatttt 353  Q
    |||||||||||||| ||||||||| ||||  ||||||| |||||  ||||||||||||||| ||||||    
T  21064834 tatttttgatgaaattatgtgtgtttttt--ataatactcttaactatttattatttcattctatttt 21064899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 266
Target Start/End: Original strand, 19361666 - 19361699
Alignment:
Q  233 tacatgtccattttggagaaattgcactaaccaa 266  Q
    |||||||||||||||||||||||||| |||||||    
T  19361666 tacatgtccattttggagaaattgcagtaaccaa 19361699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 351
Target Start/End: Original strand, 51777715 - 51777755
Alignment:
Q  311 ttttctataatacccttaatcatttattatttcattttatt 351  Q
    ||||||||||||| ||||| ||||||||||||||| |||||    
T  51777715 ttttctataatactcttaaccatttattatttcatgttatt 51777755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 128; Significance: 4e-66; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 210 - 353
Target Start/End: Complemental strand, 2540212 - 2540069
Alignment:
Q  210 ttaatactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgt 309  Q
    |||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2540212 ttaatacttcctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgt 2540113  T
Q  310 gttttctataatacccttaatcatttattatttcattttatttt 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  2540112 gttttctataatacccttaatcatttattatttcattttatttt 2540069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 212 - 359
Target Start/End: Complemental strand, 40058582 - 40058435
Alignment:
Q  212 aatactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgt 311  Q
    |||||||||||| ||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  40058582 aatactccctccgtttcaaaatacatgtccatttcggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgt 40058483  T
Q  312 tttctataatacccttaatcatttattatttcattttattttcttctc 359  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||    
T  40058482 tttctataatacccttaatcatttattatttcattttatttttttctc 40058435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 214 - 359
Target Start/End: Complemental strand, 11174500 - 11174355
Alignment:
Q  214 tactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttt 313  Q
    |||||||||| ||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11174500 tactccctccgtttcaaaatacatgttcattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttt 11174401  T
Q  314 tctataatacccttaatcatttattatttcattttattttcttctc 359  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  11174400 tctataatacccttaatcatttattatttcattttatttttttctc 11174355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 214 - 349
Target Start/End: Original strand, 3585451 - 3585586
Alignment:
Q  214 tactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttt 313  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  3585451 tactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatatgtgtgttt 3585550  T
Q  314 tctataatacccttaatcatttattatttcatttta 349  Q
    ||||||||||||||||||||||||||||||||||||    
T  3585551 tctataatacccttaatcatttattatttcatttta 3585586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 213 - 359
Target Start/End: Complemental strand, 11646603 - 11646457
Alignment:
Q  213 atactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtt 312  Q
    ||||||||| | ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  11646603 atactcccttcgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatatgtgtgtt 11646504  T
Q  313 ttctataatacccttaatcatttattatttcattttattttcttctc 359  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||    
T  11646503 ttctataatacccttaatcatttattatttcattttacttttttctc 11646457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 214 - 359
Target Start/End: Complemental strand, 43275674 - 43275531
Alignment:
Q  214 tactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttt 313  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||    
T  43275674 tactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgt--gtgttt 43275577  T
Q  314 tctataatacccttaatcatttattatttcattttattttcttctc 359  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  43275576 tctataatacccttaatcatttattatttcattttatttttttctc 43275531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 214 - 359
Target Start/End: Original strand, 37345571 - 37345716
Alignment:
Q  214 tactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttt 313  Q
    |||||||||| ||||||| ||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  37345571 tactccctccgtttcaaaatacatgtccattttgaagaaattgcaccaaccaagaaaccaaataaattttgttatttttaatgaaaatatgtgtgtgttt 37345670  T
Q  314 tctataatacccttaatcatttattatttcattttattttcttctc 359  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  37345671 tctataatacccttaatcatttattatttcattttatttttttctc 37345716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 214 - 359
Target Start/End: Original strand, 7146913 - 7147058
Alignment:
Q  214 tactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttt 313  Q
    |||||| ||| ||||||| ||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7146913 tactccttccgtttcaaaatacatgtccattttgaagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttt 7147012  T
Q  314 tctataatacccttaatcatttattatttcattttattttcttctc 359  Q
    | |||||||||||||||||||||||||||||||||||||| |||||    
T  7147013 tttataatacccttaatcatttattatttcattttatttttttctc 7147058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 213 - 359
Target Start/End: Complemental strand, 40919007 - 40918863
Alignment:
Q  213 atactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtt 312  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |  ||||||||    
T  40919007 atactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttattttttatgaaaaca--tgtgtgtt 40918910  T
Q  313 ttctataatacccttaatcatttattatttcattttattttcttctc 359  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||    
T  40918909 ttctataatacccttaatcatttattatttcattttatttttttctc 40918863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 214 - 359
Target Start/End: Original strand, 36068080 - 36068225
Alignment:
Q  214 tactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttt 313  Q
    |||||||||| ||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  36068080 tactccctccgtttcaaaatacatgtccattttggaggaattgtactaaccaaaaaaccaaataaattttgttatttttaatgaaaatatatgtgtgttt 36068179  T
Q  314 tctataatacccttaatcatttattatttcattttattttcttctc 359  Q
    ||||||||||||||||||||| |||||||||||||| ||| |||||    
T  36068180 tctataatacccttaatcattaattatttcattttacttttttctc 36068225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 225 - 353
Target Start/End: Complemental strand, 30999787 - 30999661
Alignment:
Q  225 tttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacc 324  Q
    ||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  30999787 tttcaaaatacatgtcaattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgt--gtgttttctataatacc 30999690  T
Q  325 cttaatcatttattatttcattttatttt 353  Q
    |||||||||||||||||||||||||||||    
T  30999689 cttaatcatttattatttcattttatttt 30999661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 214 - 353
Target Start/End: Original strand, 27034997 - 27035135
Alignment:
Q  214 tactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttt 313  Q
    |||||||||| ||||||| |||||||||||||||||||||||||| ||||||| ||||||||||| |||| ||||||||||||||| ||||| |||| ||    
T  27034997 tactccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataattttttttatttttgatgaaattatgtctgtg-tt 27035095  T
Q  314 tctataatacccttaatcatttattatttcattttatttt 353  Q
    |||||||||||||||| |||||||||||||||| ||||||    
T  27035096 tctataatacccttaaccatttattatttcattctatttt 27035135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 214 - 359
Target Start/End: Complemental strand, 20546564 - 20546421
Alignment:
Q  214 tactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttt 313  Q
    |||||||||||||||||| || |||||||||||| ||||||||||  || ||| |||  ||||||||||||||||||||||||||| ||  |||||||||    
T  20546564 tactccctccatttcaaaatatatgtccattttgaagaaattgcaacaatcaagaaattaaataaattttgttatttttgatgaaatta--tgtgtgttt 20546467  T
Q  314 tctataatacccttaatcatttattatttcattttattttcttctc 359  Q
    | ||| ||||||||||  ||||||||||||||| |||||| |||||    
T  20546466 tatatgatacccttaacaatttattatttcattatatttttttctc 20546421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 265 - 351
Target Start/End: Complemental strand, 13881181 - 13881094
Alignment:
Q  265 aaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt-ctataatacccttaatcatttattatttcattttatt 351  Q
    |||||| |||||||||||||||||||||||||||| | |||| || |||| |||||||||||||||||||||||||||||||| ||||    
T  13881181 aaaaaatcaaataaattttgttatttttgatgaaattgtgtgcgtttttttctataatacccttaatcatttattatttcattatatt 13881094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 213 - 346
Target Start/End: Original strand, 28562420 - 28562554
Alignment:
Q  213 atactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtg-tgt 311  Q
    ||||| ||||| ||||||| ||| ||||||||||| ||||||| |||  |||||  || ||||||||| |||| ||||||||||||| | | |||| | |    
T  28562420 atacttcctccgtttcaaaatacttgtccattttgaagaaattacacataccaaggaatcaaataaatgttgtcatttttgatgaaattctttgtgtttt 28562519  T
Q  312 tttctataatacccttaatcatttattatttcatt 346  Q
    ||||||||||||||||| |||||||| ||||||||    
T  28562520 tttctataatacccttactcatttatgatttcatt 28562554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 262 - 351
Target Start/End: Complemental strand, 28326883 - 28326797
Alignment:
Q  262 accaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttatt 351  Q
    ||||| ||| |||||||||||||||||||||||||||| |||||||   ||||| ||||||| |||||  ||||||||||||||| ||||    
T  28326883 accaagaaatcaaataaattttgttatttttgatgaaattatgtgt---ttttcaataatactcttaactatttattatttcattctatt 28326797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 262 - 353
Target Start/End: Original strand, 37510314 - 37510405
Alignment:
Q  262 accaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttatttt 353  Q
    ||||| |||| |||||||||||||||||||| || ||| | | | | | ||||| |||||||||||||||||||| ||||||||||||||||    
T  37510314 accaagaaactaaataaattttgttatttttaataaaattctttctattttttcaataatacccttaatcatttaatatttcattttatttt 37510405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 213 - 266
Target Start/End: Complemental strand, 8697952 - 8697899
Alignment:
Q  213 atactccctccatttcaaattacatgtccattttggagaaattgcactaaccaa 266  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||| |||||||    
T  8697952 atactccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaa 8697899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 213 - 266
Target Start/End: Complemental strand, 41308015 - 41307962
Alignment:
Q  213 atactccctccatttcaaattacatgtccattttggagaaattgcactaaccaa 266  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||| |||||||    
T  41308015 atactccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaa 41307962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 275 - 351
Target Start/End: Original strand, 35866675 - 35866751
Alignment:
Q  275 ataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttatt 351  Q
    |||||| ||||||||||| |||||| | | ||||| ||||||||||||||||||| |||||||||||| ||| ||||    
T  35866675 ataaatgttgttatttttcatgaaattctttgtgttttttctataatacccttaaacatttattattttattctatt 35866751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 214 - 266
Target Start/End: Complemental strand, 45278754 - 45278702
Alignment:
Q  214 tactccctccatttcaaattacatgtccattttggagaaattgcactaaccaa 266  Q
    |||||||||| ||||||| |||||||||||||||||||||||||| |||||||    
T  45278754 tactccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaa 45278702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 213 - 346
Target Start/End: Original strand, 28567918 - 28568051
Alignment:
Q  213 atactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgt-gt 311  Q
    ||||| ||||| ||||||| ||| ||||||||||| ||||||| |||  |||||  || ||||||||| |||| |||||| |||||| | | |||||  |    
T  28567918 atacttcctccgtttcaaaatacttgtccattttgaagaaattacacataccaatgaatcaaataaatgttgtcattttttatgaaattctttgtgtctt 28568017  T
Q  312 tttctataatacccttaatcatttattatttcatt 346  Q
    |||||||||||||| |  |||||||||||||||||    
T  28568018 tttctataataccc-tgctcatttattatttcatt 28568051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 213 - 346
Target Start/End: Original strand, 28575511 - 28575644
Alignment:
Q  213 atactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgt-gt 311  Q
    ||||| ||||| ||||||| ||| ||||||||||| ||||||| |||  |||||  || ||||||||| |||| |||||| |||||| | | |||||  |    
T  28575511 atacttcctccgtttcaaaatacttgtccattttgaagaaattacacataccaatgaatcaaataaatgttgtcattttttatgaaattctttgtgtctt 28575610  T
Q  312 tttctataatacccttaatcatttattatttcatt 346  Q
    |||||||||||||| |  |||||||||||||||||    
T  28575611 tttctataataccc-tgctcatttattatttcatt 28575644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 266
Target Start/End: Original strand, 10646591 - 10646644
Alignment:
Q  213 atactccctccatttcaaattacatgtccattttggagaaattgcactaaccaa 266  Q
    ||||| ||||| ||||||| |||||||||||||||||||||||||| |||||||    
T  10646591 atacttcctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaa 10646644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 214 - 266
Target Start/End: Complemental strand, 40486506 - 40486454
Alignment:
Q  214 tactccctccatttcaaattacatgtccattttggagaaattgcactaaccaa 266  Q
    |||||||||| ||||||| ||||||||||||||| |||||||||| |||||||    
T  40486506 tactccctccgtttcaaaatacatgtccattttgaagaaattgcagtaaccaa 40486454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 351
Target Start/End: Original strand, 39151457 - 39151542
Alignment:
Q  265 aaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttatt 351  Q
    |||||| |||||||| ||||||||||||||||||| ||||| | | ||||||||||||   || |||||||||||||| ||| ||||    
T  39151457 aaaaaatcaaataaactttgttatttttgatgaaattatgtat-ttttttctataatataatttatcatttattattttattctatt 39151542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 273 - 346
Target Start/End: Complemental strand, 10181074 - 10181002
Alignment:
Q  273 aaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcatt 346  Q
    |||||||||||||||||||| || ||| || || ||| |||| ||||||||| |||| ||||||||||||||||    
T  10181074 aaataaattttgttattttttataaaattacgtttgtttttt-tataataccgttaaccatttattatttcatt 10181002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 307
Target Start/End: Complemental strand, 26629235 - 26629193
Alignment:
Q  265 aaaaaaccaaataaattttgttatttttgatgaaaatatgtgt 307  Q
    |||||| ||||||||||||||||| |||||||||| |||||||    
T  26629235 aaaaaatcaaataaattttgttatgtttgatgaaattatgtgt 26629193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1431 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: scaffold1431
Description:

Target: scaffold1431; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 213 - 359
Target Start/End: Complemental strand, 177 - 31
Alignment:
Q  213 atactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtt 312  Q
    |||||| |||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  177 atactctctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtt 78  T
Q  313 ttctataatacccttaatcatttattatttcattttattttcttctc 359  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||    
T  77 ttctataatacccttaatcatttattatttcattttatttttttctc 31  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 126; Significance: 7e-65; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 212 - 353
Target Start/End: Original strand, 3518906 - 3519047
Alignment:
Q  212 aatactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgt 311  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3518906 aatactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgt 3519005  T
Q  312 tttctataatacccttaatcatttattatttcattttatttt 353  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  3519006 tttctataatacccttaataatttattatttcattttatttt 3519047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 214 - 359
Target Start/End: Original strand, 39938170 - 39938315
Alignment:
Q  214 tactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttt 313  Q
    |||||||||| ||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  39938170 tactccctccgtttcaaaatacatgaccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttt 39938269  T
Q  314 tctataatacccttaatcatttattatttcattttattttcttctc 359  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  39938270 tctataatacccttaatcatttattatttcattttatttttttctc 39938315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 215 - 359
Target Start/End: Original strand, 23366790 - 23366934
Alignment:
Q  215 actccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 314  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  23366790 actccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttattttttatgaaaatatgtgtgtgtttt 23366889  T
Q  315 ctataatacccttaatcatttattatttcattttattttcttctc 359  Q
    ||||||||||||||||||||||||||||||||||||||| |||||    
T  23366890 ctataatacccttaatcatttattatttcattttatttttttctc 23366934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 214 - 359
Target Start/End: Original strand, 1102503 - 1102648
Alignment:
Q  214 tactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttt 313  Q
    |||||||||| ||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1102503 tactccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttt 1102602  T
Q  314 tctataatacccttaatcatttattatttcattttattttcttctc 359  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||    
T  1102603 tctataatacccttaaccatttattatttcattttatttttttctc 1102648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 214 - 341
Target Start/End: Complemental strand, 37674014 - 37673887
Alignment:
Q  214 tactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttt 313  Q
    |||||||||| ||||||| ||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  37674014 tactccctccgtttcaaaatacatgttcattttggagaaattgcactaaccaagaaatcaaataaattttgttatttttgatgaaaatatgtgtgtgttt 37673915  T
Q  314 tctataatacccttaatcatttattatt 341  Q
    ||||||||||||||||||||||||||||    
T  37673914 tctataatacccttaatcatttattatt 37673887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 213 - 353
Target Start/End: Complemental strand, 12970017 - 12969877
Alignment:
Q  213 atactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtt 312  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| | ||    
T  12970017 atactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaattatgtgtatatt 12969918  T
Q  313 ttctataatacccttaatcatttattatttcattttatttt 353  Q
    ||||||||||||||||| |||||||||||| ||| ||||||    
T  12969917 ttctataatacccttaaccatttattattttattctatttt 12969877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 242 - 359
Target Start/End: Original strand, 1646317 - 1646432
Alignment:
Q  242 attttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatt 341  Q
    |||||||||||||||||  |||||| |||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  1646317 attttggagaaattgcagcaaccaagaaactaaataaattttgttatttttgatgaaaata--tgtgtgttttctataatacccttaatcatttattatt 1646414  T
Q  342 tcattttattttcttctc 359  Q
    |||||||||||| |||||    
T  1646415 tcattttatttttttctc 1646432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 291 - 353
Target Start/End: Complemental strand, 22388335 - 22388273
Alignment:
Q  291 ttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttatttt 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22388335 ttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttatttt 22388273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 273 - 351
Target Start/End: Original strand, 14779838 - 14779914
Alignment:
Q  273 aaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttatt 351  Q
    ||||||||||| ||||||||||||||| ||| ||||| ||||||||||||  |||| ||||||||||||||||| ||||    
T  14779838 aaataaatttttttatttttgatgaaattatttgtgttttttctataata--cttactcatttattatttcattatatt 14779914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 262 - 351
Target Start/End: Original strand, 18078104 - 18078193
Alignment:
Q  262 accaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttatt 351  Q
    ||||||||| |||||||||||||||||||||||||||  | | ||||  ||||||||||||| ||| | ||||||||| |||||| ||||    
T  18078104 accaaaaaatcaaataaattttgttatttttgatgaatttttttgtggattttctataatactcttgaccatttattaattcattctatt 18078193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 214 - 266
Target Start/End: Complemental strand, 34224431 - 34224379
Alignment:
Q  214 tactccctccatttcaaattacatgtccattttggagaaattgcactaaccaa 266  Q
    |||||||||| ||||||| |||||||||||||||||||||||||| |||||||    
T  34224431 tactccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaa 34224379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 273 - 329
Target Start/End: Complemental strand, 35179153 - 35179097
Alignment:
Q  273 aaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaa 329  Q
    ||||||||||||||||||||||||||| | ||||||| |||||||||||| ||||||    
T  35179153 aaataaattttgttatttttgatgaaattttgtgtgttttttctataataaccttaa 35179097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 264 - 341
Target Start/End: Complemental strand, 39562112 - 39562037
Alignment:
Q  264 caaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatt 341  Q
    ||||||| ||||||||||||||||||||||| |||| ||| | ||| |||||  |||||||||||| |||||||||||    
T  39562112 caaaaaatcaaataaattttgttatttttgaagaaattatttttgttttttc--taatacccttaaccatttattatt 39562037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 262 - 351
Target Start/End: Original strand, 19976380 - 19976468
Alignment:
Q  262 accaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttatt 351  Q
    ||||| ||| ||||||||||||| || ||||||| ||| ||||||| | ||||||||||||||||||   ||||||||||| ||| ||||    
T  19976380 accaagaaatcaaataaattttggtacttttgataaaattatgtgt-ttttttctataatacccttacctatttattattttattatatt 19976468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 351
Target Start/End: Complemental strand, 32840394 - 32840312
Alignment:
Q  272 caaataaattttgttatttttgatgaaaatatgtgtgtgt---tttctataatacccttaatcatttattatttcattttatt 351  Q
    |||||||||||||||||||||||||||| | ||||| | |   ||||||||||||| |||   ||||||||||||||| ||||    
T  32840394 caaataaattttgttatttttgatgaaattctgtgtttttttctttctataataccattatcgatttattatttcattctatt 32840312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 124; Significance: 1e-63; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 214 - 353
Target Start/End: Complemental strand, 12807130 - 12806991
Alignment:
Q  214 tactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttt 313  Q
    |||||||||| ||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  12807130 tactccctccgtttcaaaatacatgtccattttggagaaattgcattaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttt 12807031  T
Q  314 tctataatacccttaatcatttattatttcattttatttt 353  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  12807030 tctataatacccttaatcatttattatttcattttatttt 12806991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 214 - 353
Target Start/End: Original strand, 25773649 - 25773788
Alignment:
Q  214 tactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttt 313  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  25773649 tactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaatcaaataaattttgttatttttgatgaaaatatgtgtgtgttt 25773748  T
Q  314 tctataatacccttaatcatttattatttcattttatttt 353  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  25773749 tctataatacccttaatcatttattatttcattttatttt 25773788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 209 - 359
Target Start/End: Complemental strand, 30720774 - 30720624
Alignment:
Q  209 tttaatactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtg 308  Q
    |||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  30720774 tttattactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtg 30720675  T
Q  309 tgttttctataatacccttaatcatttattatttcattttattttcttctc 359  Q
    |||||| |||||||||||||||||| ||||||||||||||||||| |||||    
T  30720674 tgttttttataatacccttaatcatctattatttcattttatttttttctc 30720624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 212 - 359
Target Start/End: Complemental strand, 10285336 - 10285189
Alignment:
Q  212 aatactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgt 311  Q
    |||||||||||| ||||||| || ||||| ||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  10285336 aatactccctccgtttcaaaatagatgtctattttggagaaattgcattaaccaagaaactaaataaattttgttatttttgatgaaaatatgtgtgtgt 10285237  T
Q  312 tttctataatacccttaatcatttattatttcattttattttcttctc 359  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||    
T  10285236 tttctataatacccttaatcatttattatttcattttatttttttctc 10285189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 214 - 359
Target Start/End: Complemental strand, 40886887 - 40886742
Alignment:
Q  214 tactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttt 313  Q
    |||||| ||| ||||||| ||||||| |||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||| |||    
T  40886887 tactccatccgtttcaaaatacatgttcattttggagaaattgcactaaccaagaaatcgaataaattttgttatttttgatgaaaatatgtgtgtattt 40886788  T
Q  314 tctataatacccttaatcatttattatttcattttattttcttctc 359  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  40886787 tctataatacccttaatcatttattatttcattttatttttttctc 40886742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 214 - 359
Target Start/End: Complemental strand, 36561376 - 36561231
Alignment:
Q  214 tactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttt 313  Q
    |||||| ||| ||||||| |||||||||||||| || |||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  36561376 tactccatccgtttcaaaatacatgtccattttagaaaaattgcagtaatcaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttt 36561277  T
Q  314 tctataatacccttaatcatttattatttcattttattttcttctc 359  Q
    ||||||||||| |||| ||||||||||||||||||||||| |||||    
T  36561276 tctataatacctttaaccatttattatttcattttatttttttctc 36561231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 213 - 353
Target Start/End: Complemental strand, 37900902 - 37900762
Alignment:
Q  213 atactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtt 312  Q
    ||||||||||| ||||||| ||||  |||||||||||||||||||| ||||||| |||| |||||||||||| |||||||||||||| ||| ||||||||    
T  37900902 atactccctccgtttcaaaatacacatccattttggagaaattgcagtaaccaagaaactaaataaattttgatatttttgatgaaattatatgtgtgtt 37900803  T
Q  313 ttctataatacccttaatcatttattatttcattttatttt 353  Q
    ||||||||||||||||| |||||||||||||||| ||||||    
T  37900802 ttctataatacccttaaccatttattatttcattctatttt 37900762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 225 - 353
Target Start/End: Complemental strand, 7277688 - 7277560
Alignment:
Q  225 tttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacc 324  Q
    ||||||| |||||||| ||||||||||||||| | ||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  7277688 tttcaaaatacatgtctattttggagaaattggagtaaccaataaaccaaataaattttgttatttttgatcaaattatgtgtgtgttttctataatacc 7277589  T
Q  325 cttaatcatttattatttcattttatttt 353  Q
     |||| |||||||||||||||| ||||||    
T  7277588 tttaaccatttattatttcattatatttt 7277560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 252 - 353
Target Start/End: Complemental strand, 25683467 - 25683366
Alignment:
Q  252 aattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttatt 351  Q
    ||||||| ||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||| ||| ||||    
T  25683467 aattgcaataaccaagaaaccaaataaattttgttatttttgataaaattatgtgtgtgttttctataatacccttaaccatttattattttattctatt 25683368  T
Q  352 tt 353  Q
    ||    
T  25683367 tt 25683366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 213 - 348
Target Start/End: Original strand, 16983257 - 16983393
Alignment:
Q  213 atactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataa--attttgttatttttgatgaaaatatgtgtgtg 310  Q
    ||||||||||  ||||||| |||||||||||||||||||||||||| ||||||| |||||||||||   |||| || ||||||||||||  || |||||     
T  16983257 atactccctctgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataattttttttttttttttgatgaaatgatatgtgtt 16983356  T
Q  311 ttttctataatacccttaatcatttattatttcatttt 348  Q
    ||||||| ||||||||||| || ||||||||| |||||    
T  16983357 ttttctacaatacccttaacca-ttattattttatttt 16983393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 211 - 351
Target Start/End: Complemental strand, 734617 - 734478
Alignment:
Q  211 taatactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtg 310  Q
    ||||| ||||||| ||||| | ||| ||||||||||| ||||||| | |  |||||| || |||||||||||||| ||| ||||||||| | | |||||     
T  734617 taatattccctccgtttcacaatacttgtccattttgaagaaattactcataccaaagaatcaaataaattttgtcattattgatgaaattctttgtgt- 734519  T
Q  311 ttttctataatacccttaatcatttattatttcattttatt 351  Q
    |||||||||||||||||| ||||||||||||||||| ||||    
T  734518 ttttctataatacccttactcatttattatttcattctatt 734478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 262 - 351
Target Start/End: Complemental strand, 30403191 - 30403101
Alignment:
Q  262 accaaaaaaccaaataaattttgttatttttgatgaaaatatgtg-tgtgttttctataatacccttaatcatttattatttcattttatt 351  Q
    ||||| |||||||||||||||||||||||||||||||| | |||| | | ||||||||||||| ||||||||||| |||||||||||||||    
T  30403191 accaagaaaccaaataaattttgttatttttgatgaaattctgtgtttttttttctataatactcttaatcatttgttatttcattttatt 30403101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 209 - 339
Target Start/End: Complemental strand, 23098508 - 23098386
Alignment:
Q  209 tttaatactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtg 308  Q
    ||||||||||| ||| |||||||| ||||||||| |||| ||||||| ||       | |||| ||||||||||||||||||||||||||| ||||||      
T  23098508 tttaatactccatccgtttcaaat-acatgtccaatttgaagaaattaca-------agaaactaaataaattttgttatttttgatgaaattatgtgca 23098417  T
Q  309 tgttttctataatacccttaatcatttatta 339  Q
    ||||| ||||||||||||||| |||||||||    
T  23098416 tgtttcctataatacccttaaccatttatta 23098386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 211 - 351
Target Start/End: Original strand, 11319556 - 11319696
Alignment:
Q  211 taatactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtg 310  Q
    ||||||| ||||| ||||| | ||  ||||||||||| ||||||| |||  || ||  || ||||||||| |||| |||||| |||||| | | ||| |     
T  11319556 taatacttcctccgtttcacaatatttgtccattttgaagaaattacacatactaatgaatcaaataaatgttgtaattttttatgaaattctttgtttt 11319655  T
Q  311 ttttctataatacccttaatcatttattatttcattttatt 351  Q
    |||||||||||||||||| ||||||||||||||||| ||||    
T  11319656 ttttctataatacccttactcatttattatttcattctatt 11319696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 213 - 351
Target Start/End: Original strand, 39070882 - 39071020
Alignment:
Q  213 atactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgt-gtgtgt 311  Q
    ||||||||||| ||||| | ||| ||| ||||||| ||||||| |||  |  ||  || ||||||||| |||| ||||||||||||| | ||| |||| |    
T  39070882 atactccctccgtttcacaatacttgttcattttgaagaaattacacatattaaggaatcaaataaatgttgtcatttttgatgaaa-tctgttgtgttt 39070980  T
Q  312 tttctataatacccttaatcatttattatttcattttatt 351  Q
    ||||||||||||||||| ||||||||||||||||| ||||    
T  39070981 tttctataatacccttactcatttattatttcattctatt 39071020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 274 - 351
Target Start/End: Complemental strand, 1056498 - 1056422
Alignment:
Q  274 aataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttatt 351  Q
    ||||||||||||||||||| |||||| | | ||||| |||||||||||||  || |||||||||||||||||| ||||    
T  1056498 aataaattttgttatttttaatgaaattctttgtgt-ttttctataatactattgatcatttattatttcattatatt 1056422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 263
Target Start/End: Complemental strand, 15305265 - 15305216
Alignment:
Q  214 tactccctccatttcaaattacatgtccattttggagaaattgcactaac 263  Q
    |||||||||| ||||||| |||||||||||||||||||||||||| ||||    
T  15305265 tactccctccgtttcaaaatacatgtccattttggagaaattgcagtaac 15305216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 211 - 322
Target Start/End: Original strand, 11796448 - 11796559
Alignment:
Q  211 taatactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtg 310  Q
    ||||||||||||| ||||| | ||| ||||  ||||| ||||||| ||   ||||| |||  |||| |||||||||||||||||||||| | | |||||     
T  11796448 taatactccctccttttcacactacttgtcatttttgaagaaattacagataccaagaaattaaattaattttgttatttttgatgaaattctatgtgtt 11796547  T
Q  311 ttttctataata 322  Q
    | ||||||||||    
T  11796548 tgttctataata 11796559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 273 - 351
Target Start/End: Original strand, 16054173 - 16054249
Alignment:
Q  273 aaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttatt 351  Q
    |||||||||||||||||||| ||||||   | ||||| |||||||||||| |||| | |||||||||||| ||| ||||    
T  16054173 aaataaattttgttattttttatgaaa--ttttgtgttttttctataatatccttgaccatttattattttattctatt 16054249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 213 - 353
Target Start/End: Original strand, 45453 - 45593
Alignment:
Q  213 atactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtt 312  Q
    ||||||||||| ||||||| ||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||| ||    
T  45453 atactccctccgtttcaaaatacatgttcattttggagaaattgcaccaaccaagaaaccaaataaattttgttatttttgatgaaattatgtgtgtatt 45552  T
Q  313 ttctataatacccttaatcatttattatttcattttatttt 353  Q
    ||||||||||||||||| |||||||||||| ||| ||||||    
T  45553 ttctataatacccttaaccatttattattttattctatttt 45593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1770 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold1770
Description:

Target: scaffold1770; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 214 - 359
Target Start/End: Original strand, 170 - 307
Alignment:
Q  214 tactccctccatttcaaattacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttt 313  Q
    |||||||||| ||||||| ||||| |||| ||||||||||||||| |||||        |||||||||||||||||||| ||||||||||||||||||||    
T  170 tactccctccgtttcaaaatacatatccactttggagaaattgcagtaacc--------aaataaattttgttattttttatgaaaatatgtgtgtgttt 261  T
Q  314 tctataatacccttaatcatttattatttcattttattttcttctc 359  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||    
T  262 tctataatacccttaaccatttattatttcattttatttttttctc 307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 233 - 353
Target Start/End: Complemental strand, 521 - 403
Alignment:
Q  233 tacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatca 332  Q
    ||||||| |||||||| ||||||||| ||| ||||||| |||||||||||||||||||||||| ||| ||  |||||||||| |||||||||||||||||    
T  521 tacatgttcattttggcgaaattgcagtaatcaaaaaatcaaataaattttgttatttttgataaaatta--tgtgtgttttttataatacccttaatca 424  T
Q  333 tttattatttcattttatttt 353  Q
    |||||||||||||| ||||||    
T  423 tttattatttcattctatttt 403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 272 - 351
Target Start/End: Original strand, 70882 - 70961
Alignment:
Q  272 caaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttatt 351  Q
    |||||||||||||||||||||||||||| | ||||||| |||||| ||| |||||||| |||||||||||||||| ||||    
T  70882 caaataaattttgttatttttgatgaaattctgtgtgttttttctgtaacacccttaaccatttattatttcattctatt 70961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 280 - 353
Target Start/End: Complemental strand, 65375 - 65301
Alignment:
Q  280 ttttgttatttttgatgaaaatatgtgtgtgtttt-ctataatacccttaatcatttattatttcattttatttt 353  Q
    |||| ||||||||||||||| ||| ||||| |||| ||||||||||||||| |||||||||||||||| ||||||    
T  65375 ttttattatttttgatgaaattatatgtgtttttttctataatacccttaaccatttattatttcattctatttt 65301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 23467 - 23519
Alignment:
Q  214 tactccctccatttcaaattacatgtccattttggagaaattgcactaaccaa 266  Q
    |||||||||| ||||||| |||||||||||||||||||||||||| |||||||    
T  23467 tactccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaa 23519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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