View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17055_low_10 (Length: 319)
Name: NF17055_low_10
Description: NF17055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17055_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 305
Target Start/End: Complemental strand, 12106239 - 12105952
Alignment:
| Q |
18 |
gcttaaccttcctaaactccttaacaaccggcttcacaaacctctgctgcttccgccacgccacctgctgtaacgcatactccaactcattaaccgaata |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
12106239 |
gcttaaccttcctaaactccttaacaaccggcttcacaaacctctgctgcttccgccacgccacctgctgtaacgcatactccacctcattaaccgaata |
12106140 |
T |
|
| Q |
118 |
gtactgctgcataagaagcacttgattccaattaattctcctctgctgaattgcaccaacaacatgatcatactcaccactctcaccagcaacacctaaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12106139 |
gtactgctgcataagaagcacttgattccaattaattctcctctgctgaattgcaccaacaacatgatcatactcaccactctcaccagcaacacctaaa |
12106040 |
T |
|
| Q |
218 |
tgctgacacaaacaatctataatcgcattcgcagctgcaaattcgctgcgaagccaattcataaacccatctctctcatccacaaacc |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12106039 |
tgctgacacaaacaatctataatcgcattcgcagctgcaaattcgctgcgaagccaattcataaacccatctctctcatccacaaacc |
12105952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 24 - 305
Target Start/End: Complemental strand, 12089596 - 12089315
Alignment:
| Q |
24 |
ccttcctaaactccttaacaaccggcttcacaaacctctgctgcttccgccacgccacctgctgtaacgcatactccaactcattaaccgaatagtactg |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||| | | ||| ||||||||| | ||||| |
|
|
| T |
12089596 |
ccttcctaaactccttaacaaccggcttcacaaacctctgctgccgcctccacgccacctgctgcaacgcatatgcaacctcgttaaccgaaaaatactg |
12089497 |
T |
|
| Q |
124 |
ctgcataagaagcacttgattccaattaattctcctctgctgaattgcaccaacaacatgatcatactcaccactctcaccagcaacacctaaatgctga |
223 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
12089496 |
ctgcataagcagcacttgattccaattaaccctcctctgctgaattgcaccaacaacatgatcatactcaccactctcaccaataacacctaaatgctga |
12089397 |
T |
|
| Q |
224 |
cacaaacaatctataatcgcattcgcagctgcaaattcgctgcgaagccaattcataaacccatctctctcatccacaaacc |
305 |
Q |
| |
|
||||||||||| ||||| ||||||||||| || |||||||| |||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
12089396 |
cacaaacaatcaataatagcattcgcagcagcgaattcgctacgaatccaattcataaacccatctctctcatcaacaaacc |
12089315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University