View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17055_low_12 (Length: 304)
Name: NF17055_low_12
Description: NF17055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17055_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 14 - 286
Target Start/End: Complemental strand, 31604789 - 31604517
Alignment:
| Q |
14 |
atatggtagtgggttgatagctgttctatggttaacaggaataaccacacccattttgaaattcctatatgacccatctaagagatatttgtccttaaat |
113 |
Q |
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| T |
31604789 |
atatggtagtgggttgatagctgttctatggttaacaggaataaccacacccattttgaaattcctatatgacccatctaagagatatttgtccttaaat |
31604690 |
T |
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| Q |
114 |
aagagaagaaccattgaacaatcaacttcagatattgagctacgtctcatggcatgtgtacacagtcaagaaaacacaccaaccattatcaatcttcttg |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
31604689 |
aagagaagaaccattgaacaatcaacttcagatattgagctacgtctcatggcatgtgtacacagtcaagaaaacacaccatccattatcaatcttcttg |
31604590 |
T |
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| Q |
214 |
aaatgtcaaacccttctttggaaaatcctatttgtttctatgtccaacatcttattcaacttagagggagatc |
286 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
31604589 |
aaatgtcaaacccttctttggaaaatcctatttgtttctatgtcctacatcttattcaacttagaggaagatc |
31604517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 14 - 275
Target Start/End: Complemental strand, 31594537 - 31594276
Alignment:
| Q |
14 |
atatggtagtgggttgatagctgttctatggttaacaggaataaccacacccattttgaaattcctatatgacccatctaagagatatttgtccttaaat |
113 |
Q |
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| T |
31594537 |
atatggtagtgggttgatagctctggtatgggtaacaggactaatcacacccattgtgaaattcctatatgacccatctaagagatatttgtccttaaat |
31594438 |
T |
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| Q |
114 |
aagagaagaaccattgaacaatcaacttcagatattgagctacgtctcatggcatgtgtacacagtcaagaaaacacaccaaccattatcaatcttcttg |
213 |
Q |
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| T |
31594437 |
aagagaagaaccattgaacaatcagcttcagatattgagctacgtctcatggcatgtgtacacgatcaagaaaacataccatccatgatcaatcttcttg |
31594338 |
T |
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| Q |
214 |
aaatgtcaaacccttctttggaaaatcctatttgtttctatgtccaacatcttattcaactt |
275 |
Q |
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|||||||||||||||| || || |||||||||||||||||||| |||||||||||||||| |
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| T |
31594337 |
aaatgtcaaacccttcactgcgaagtcctatttgtttctatgtcctacatcttattcaactt |
31594276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 14 - 280
Target Start/End: Complemental strand, 31579010 - 31578744
Alignment:
| Q |
14 |
atatggtagtgggttgatagctgttctatggttaacaggaataaccacacccattttgaaattcctatatgacccatctaagagatatttgtccttaaat |
113 |
Q |
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|||||||| ||||||||||||| | ||||| |||||| | || ||||||||| |||||||||||||||| ||||||||||| || || ||||||||| |
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| T |
31579010 |
atatggtattgggttgatagctttaatatggataacagcagccacaacacccattgtgaaattcctatatgatccatctaagaggtacttatccttaaat |
31578911 |
T |
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| Q |
114 |
aagagaagaaccattgaacaatcaacttcagatattgagctacgtctcatggcatgtgtacacagtcaagaaaacacaccaaccattatcaatcttcttg |
213 |
Q |
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| T |
31578910 |
aggagaagaaccattgaacaatcaacttcagatattgaacttcgtatcttggcatgtatacacagtcaagaaaacacaccatccattatcaatcttcttg |
31578811 |
T |
|
| Q |
214 |
aaatgtcaaacccttctttggaaaatcctatttgtttctatgtccaacatcttattcaacttagagg |
280 |
Q |
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| T |
31578810 |
aaatgtcaagcccttcattgaaaaatccaatttgtttctatgtcctacatcttattcaacttagagg |
31578744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 60 - 286
Target Start/End: Complemental strand, 31563610 - 31563384
Alignment:
| Q |
60 |
acacccattttgaaattcctatatgacccatctaagagatatttgtccttaaataagagaagaaccattgaacaatcaacttcagatattgagctacgtc |
159 |
Q |
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||||||||| |||||||||||||||| |||||||||| ||| || |||||||||| |||||||||||||||||||||||||||||||| || ||| ||| |
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| T |
31563610 |
acacccattgtgaaattcctatatgatccatctaagaaatacttatccttaaataggagaagaaccattgaacaatcaacttcagataccgaactaagtc |
31563511 |
T |
|
| Q |
160 |
tcatggcatgtgtacacagtcaagaaaacacaccaaccattatcaatcttcttgaaatgtcaaacccttctttggaaaatcctatttgtttctatgtcca |
259 |
Q |
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||||||||||| |||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
31563510 |
tcatggcatgtatacatagtcaagaaaacacaccatccattattaatcttcttgaaatgtcaaacccttcattggagaatcctatttgtttctatgtcct |
31563411 |
T |
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| Q |
260 |
acatcttattcaacttagagggagatc |
286 |
Q |
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| T |
31563410 |
acatcttattcaacttagaggaagatc |
31563384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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