View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17055_low_15 (Length: 291)
Name: NF17055_low_15
Description: NF17055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17055_low_15 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 15 - 269
Target Start/End: Complemental strand, 626261 - 626007
Alignment:
| Q |
15 |
caaaatgcaacatttttgaaattttatggtgtgagtaaacaacgtagatgcctatagagcaactctagcttccaaaaccagcaccaaagtccaaaaccga |
114 |
Q |
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| T |
626261 |
caaaatgcaacatttttgaaattttatggtgtgagtaaacaacgtagatgcctatagagcaactttagcttccaaaaccagctccaaagtccaaaaccga |
626162 |
T |
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| Q |
115 |
accgatgttgttaataataataatatgcaaagtggtggtgggggaaacgttgaatagggtggaggttaaaataattcaagtttggttacggttaatgatg |
214 |
Q |
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| T |
626161 |
accgatgttgttaataataataatatgcaaagtggtggtggaggaaacgttgaataaggtggaggttaaaataattcaagtttggttacggttaatgatg |
626062 |
T |
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| Q |
215 |
aataaagtgttttatctaggttgagtttgatgatggtggtcgggatgttcgtgaa |
269 |
Q |
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| T |
626061 |
aataaagtgttttatctaggttgagtttgatgatgatggtcgggatgttcgtgaa |
626007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 16465264 - 16465324
Alignment:
| Q |
174 |
tggaggttaaaataattcaagtttggttacggttaatgatgaataaagtgttttatctagg |
234 |
Q |
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| T |
16465264 |
tggaagttaagataatccaagttaggttacagtcaatgatgaataaggtgttttatctagg |
16465324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 129 - 267
Target Start/End: Complemental strand, 190363 - 190226
Alignment:
| Q |
129 |
taataataatatgcaaagtggtggtgggggaaacgttgaatagggtggaggttaaaataattcaagtttggttacggttaatgatgaataaagtgtttta |
228 |
Q |
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| T |
190363 |
taataatgatatgcaaagtggtggtagaggcaatgttgaattatgtggagtttaaaataattcaagttagattacggttaatgatgaataagatgtttta |
190264 |
T |
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| Q |
229 |
tctaggttgagtttgatgatggtggtcgggatgttcgtg |
267 |
Q |
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| T |
190263 |
tct-gggagagtttaatgatgatggtcaggatgttcgtg |
190226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 131 - 249
Target Start/End: Complemental strand, 25052634 - 25052515
Alignment:
| Q |
131 |
ataataatatgcaaagtggtggtgggggaaacgttgaatagggtggaggttaaaataattcaagtttggttacggttaatgatgaataaagtgttttatc |
230 |
Q |
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| T |
25052634 |
ataatgatgtgcaaagtggcggtggaggcaatgacgaattaggtggaggctaaaataattcaagttaggttacggttaatgatgaataagatgttttatt |
25052535 |
T |
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| Q |
231 |
t-aggttgagtttgatgatg |
249 |
Q |
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| T |
25052534 |
tggggttgagtttgatgatg |
25052515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 254
Target Start/End: Original strand, 7858277 - 7858352
Alignment:
| Q |
180 |
ttaaaataattcaagtttggttacggttaatgatgaataaagtgttttatcta-ggttgagtttgatgatggtggt |
254 |
Q |
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| T |
7858277 |
ttaaaataatccaatttaggttacaattaaggatgaataagatgttttatctagggttgagtttgatgatgctggt |
7858352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 173 - 269
Target Start/End: Original strand, 37205246 - 37205343
Alignment:
| Q |
173 |
gtggaggttaaaataattcaagtttggttacggttaatgatgaataaagtgttttatct-aggttgagtttgatgatggtggtcgggatgttcgtgaa |
269 |
Q |
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| T |
37205246 |
gtggaggtttaaataatccaagtcaggttacggttaatgatgaataaggtgttttatgtgcggttgagtttgatggtgatggtcaagatgtttgtgaa |
37205343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 129 - 254
Target Start/End: Complemental strand, 10253937 - 10253811
Alignment:
| Q |
129 |
taataataatatgcaaagtggtggtgggggaaacgttgaatagggtggaggttaaaataattcaagtttggttacggttaatgatgaataaagtgtttta |
228 |
Q |
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| T |
10253937 |
taataatgatgtgcaaagtggtgttggaagcaatgttgaattaggtgaatgttaaaataatccaagttaggttacggttaatgatcaataaggtgattta |
10253838 |
T |
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| Q |
229 |
tct-aggttgagtttgatgatggtggt |
254 |
Q |
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| T |
10253837 |
tttggggtagagtttgatgatgatggt |
10253811 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 255
Target Start/End: Complemental strand, 12261363 - 12261287
Alignment:
| Q |
180 |
ttaaaataattcaagtttggttacggttaatgatgaataaagtgttttatctag-gttgagtttgatgatggtggtc |
255 |
Q |
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| T |
12261363 |
ttaaaataatcaaagttaggttacagttaaggatgaataaggtgttttatttggtgttgagtttgatgatgatggtc |
12261287 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 231
Target Start/End: Complemental strand, 12266554 - 12266497
Alignment:
| Q |
174 |
tggaggttaaaataattcaagtttggttacggttaatgatgaataaagtgttttatct |
231 |
Q |
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| T |
12266554 |
tggaggttaaatcaatccaagttaggttacggttaatggtgaataagatgttttatct |
12266497 |
T |
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