View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17055_low_2 (Length: 498)
Name: NF17055_low_2
Description: NF17055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17055_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 1 - 476
Target Start/End: Complemental strand, 40170858 - 40170368
Alignment:
| Q |
1 |
aaatatctgagcg--ataaaatgtaatcgaatgcatgtgtaaaacttttttacaccaataatgcatatcaattaaa-ctcattgtatactttcccactta |
97 |
Q |
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||||||||||||| ||||||||| | ||||||||||||||||||||| || || ||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
40170858 |
aaatatctgagcgcgataaaatgtgactgaatgcatgtgtaaaacttttataggccgataatgcatatcaattaaaactcattatatactttcccactta |
40170759 |
T |
|
| Q |
98 |
aaaccaaacacttgtccattgttttgtattgttcaactttatttgcagaagttccacatgcatagcatatatggtgggtcctaatgattttgataaaata |
197 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
40170758 |
aaaccaaacacttgttcattgttttgtattgttcaactttatttgcaaaagttccacatgcatagaatatatggtgggtcctaatgattttgataaaata |
40170659 |
T |
|
| Q |
198 |
atcctcaaaaaggtgaagacac-tatatgttaaatgaaaccatgcatgttgttatatcattctcgtgcttcatcaacacaatttcaagatacactttcat |
296 |
Q |
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|||||||||| |||||| |||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
40170658 |
atcctcaaaa-ggtgaacacacatatatgttaaattaaaccatgcatgttattatatcattctcgtgcttcatcaacacaattccaagatacacttccat |
40170560 |
T |
|
| Q |
297 |
tattacgcaacactatcccgtcatgattcgaacaatctttaattattcataagcaaaatcactaagattgttcagtattactaaacagaaccaaactaat |
396 |
Q |
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|||||||||||||||||| |||| |||| ||||||||||||||| ||||||||||| |||||||||||| ||||| ||| |||| |||||||||||||| |
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| T |
40170559 |
tattacgcaacactatccaatcataattcaaacaatctttaattagtcataagcaaattcactaagattgctcagtgttaataaaaagaaccaaactaat |
40170460 |
T |
|
| Q |
397 |
caaattcagcgtt---------ccaatcacaacacaaactcaaattgagtgatagtagtaa---attataatagtatcattaccatgggctt |
476 |
Q |
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| T |
40170459 |
caaattcagcgttgccataacactaatcacaacacaaactcaaattgagtaatagtagtaaatgattataacagtatcattaccatgggctt |
40170368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 36480073 - 36480121
Alignment:
| Q |
29 |
atgcatgtgtaaaacttttttacaccaataatgcatatcaattaaactc |
77 |
Q |
| |
|
||||||||||||||||| |||||||| | |||||||||||||||||||| |
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|
| T |
36480073 |
atgcatgtgtaaaacttgtttacaccgacaatgcatatcaattaaactc |
36480121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 8279576 - 8279625
Alignment:
| Q |
29 |
atgcatgtgtaaaacttttttacaccaataatgcatatcaattaaactca |
78 |
Q |
| |
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|||||||||||||||||||||||||||| | || |||| ||||||||||| |
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|
| T |
8279576 |
atgcatgtgtaaaacttttttacaccaacagtgtatatgaattaaactca |
8279625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 20996368 - 20996421
Alignment:
| Q |
29 |
atgcatgtgtaaaacttttttacaccaataatgcatatcaattaaactcattgt |
82 |
Q |
| |
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|||| ||| |||||||||||||||| | |||||||||||||||||||||||| |
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|
| T |
20996368 |
atgcttgtataaaacttttttacacttaatatgcatatcaattaaactcattgt |
20996421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 18637491 - 18637438
Alignment:
| Q |
24 |
atcgaatgcatgtgtaaaacttttttacaccaataatgcatatcaattaaactc |
77 |
Q |
| |
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|||| |||||| |||||||||| ||||||| | |||||||||||||||||||| |
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|
| T |
18637491 |
atcgtatgcatatgtaaaacttctttacactgacaatgcatatcaattaaactc |
18637438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 28479165 - 28479117
Alignment:
| Q |
29 |
atgcatgtgtaaaacttttttacaccaataatgcatatcaattaaactc |
77 |
Q |
| |
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|||||||||||||||||||||||||| | || ||||||||||||||| |
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| T |
28479165 |
atgcatgtgtaaaacttttttacaccgacggtgaatatcaattaaactc |
28479117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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