View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17055_low_21 (Length: 247)
Name: NF17055_low_21
Description: NF17055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17055_low_21 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-125; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 14 - 247
Target Start/End: Complemental strand, 31605636 - 31605403
Alignment:
| Q |
14 |
cagagacaagcaaattcaaggaaagatagttcttctatagattcgatgacaatttgtttgctggctatgattgctttcacaatatgtgttttacgtccca |
113 |
Q |
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| T |
31605636 |
cagagacaagcaaattcaaggaaagatagttcttctatagattcgatgacaatttgtttgctggctatgattgctttcacaatatgtgttttacgtccca |
31605537 |
T |
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| Q |
114 |
taatgttttggatgataagacaaacaccagaagggaaacaaattaaagaatcgtacatattttcggtatttttaatgttattaggctgctcgttatttag |
213 |
Q |
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| T |
31605536 |
taatgttttggatgataagacaaacaccagaagggaaacaaattaaagaatcgtacatactttcggtatttttaatgttattaggctgctcgttatttag |
31605437 |
T |
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| Q |
214 |
tgaagttattggagaacattttatgcttggtcct |
247 |
Q |
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| T |
31605436 |
tgaggttattggagaacattttatgcttggtcct |
31605403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 13 - 243
Target Start/End: Complemental strand, 31595873 - 31595643
Alignment:
| Q |
13 |
gcagagacaagcaaattcaaggaaagatagttcttctatagattcgatgacaatttgtttgctggctatgattgctttcacaatatgtgttttacgtccc |
112 |
Q |
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| T |
31595873 |
gcagaaacaaggaactttaatgaaagacagttctaatgtaaattggatgacaatttgtttgctagctatgattgccttcacaatatgtgttctacgtccc |
31595774 |
T |
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| Q |
113 |
ataatgttttggatgataagacaaacaccagaagggaaacaaattaaagaatcgtacatattttcggtatttttaatgttattaggctgctcgttattta |
212 |
Q |
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| T |
31595773 |
ataatgttgtggatggtaagacaaacacccgaagggcaaccaattaaagaatcatacgtactttcggtaattttaatgttattggggtgctcattattta |
31595674 |
T |
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| Q |
213 |
gtgaagttattggagaacattttatgcttgg |
243 |
Q |
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| T |
31595673 |
tggaggttattggagaacattttacgcttgg |
31595643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 113 - 247
Target Start/End: Complemental strand, 31579911 - 31579777
Alignment:
| Q |
113 |
ataatgttttggatgataagacaaacaccagaagggaaacaaattaaagaatcgtacatattttcggtatttttaatgttattaggctgctcgttattta |
212 |
Q |
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| T |
31579911 |
ataatgttttggatgataagaaaaacacctgaaggaaaaccaatcaaagaatcatacatattttcagtgtttttaatgatattgggctgctcattattta |
31579812 |
T |
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| Q |
213 |
gtgaagttattggagaacattttatgcttggtcct |
247 |
Q |
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| T |
31579811 |
gtgaggttattggagaacattatatgattggtcct |
31579777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 79 - 202
Target Start/End: Complemental strand, 31564411 - 31564288
Alignment:
| Q |
79 |
tatgattgctttcacaatatgtgttttacgtcccataatgttttggatgataagacaaacaccagaagggaaacaaattaaagaatcgtacatattttcg |
178 |
Q |
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| T |
31564411 |
tatggttgttttcataatatgtgttcttagacccataatgctttggatggtaagaaaaacaccagaaggaaaaccaatcaaagaatcatacataatgtct |
31564312 |
T |
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| Q |
179 |
gtatttttaatgttattaggctgc |
202 |
Q |
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| T |
31564311 |
gtgtttttaatgttactcggctgc |
31564288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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