View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17055_low_22 (Length: 246)

Name: NF17055_low_22
Description: NF17055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17055_low_22
NF17055_low_22
[»] chr1 (17 HSPs)
chr1 (7-246)||(48033387-48033626)
chr1 (163-201)||(48057980-48058018)
chr1 (161-197)||(1231594-1231630)
chr1 (161-197)||(2951774-2951810)
chr1 (161-197)||(4266166-4266202)
chr1 (161-197)||(7333732-7333768)
chr1 (161-197)||(18706911-18706947)
chr1 (161-197)||(19764952-19764988)
chr1 (161-197)||(19768251-19768287)
chr1 (161-197)||(23483110-23483146)
chr1 (163-195)||(29814823-29814855)
chr1 (161-197)||(35613853-35613889)
chr1 (161-197)||(35614603-35614639)
chr1 (161-197)||(38914155-38914191)
chr1 (161-197)||(41531003-41531039)
chr1 (161-197)||(52036448-52036484)
chr1 (161-197)||(52687519-52687555)
[»] chr4 (13 HSPs)
chr4 (161-201)||(54624744-54624784)
chr4 (161-197)||(12090868-12090904)
chr4 (161-197)||(14148769-14148805)
chr4 (161-197)||(16918296-16918332)
chr4 (161-197)||(30825330-30825366)
chr4 (161-197)||(31966377-31966413)
chr4 (161-197)||(37591208-37591244)
chr4 (161-197)||(39058760-39058796)
chr4 (161-197)||(41386911-41386947)
chr4 (161-197)||(44376485-44376521)
chr4 (161-197)||(47143208-47143244)
chr4 (161-197)||(52098598-52098634)
chr4 (161-197)||(52434409-52434445)
[»] chr2 (11 HSPs)
chr2 (161-201)||(20597511-20597551)
chr2 (161-197)||(6120336-6120372)
chr2 (161-197)||(16214610-16214646)
chr2 (161-197)||(18351336-18351372)
chr2 (161-197)||(31423793-31423829)
chr2 (161-197)||(34008119-34008155)
chr2 (161-197)||(36279861-36279897)
chr2 (161-197)||(41663021-41663057)
chr2 (161-197)||(41664295-41664331)
chr2 (161-197)||(42055037-42055073)
chr2 (161-197)||(44901867-44901903)
[»] chr8 (19 HSPs)
chr8 (172-201)||(32976648-32976677)
chr8 (161-197)||(996223-996259)
chr8 (161-197)||(6299428-6299464)
chr8 (161-197)||(10477722-10477758)
chr8 (161-197)||(11724975-11725011)
chr8 (161-197)||(18175166-18175202)
chr8 (161-197)||(18997485-18997521)
chr8 (161-197)||(19240449-19240485)
chr8 (161-197)||(19313633-19313669)
chr8 (161-197)||(23353978-23354014)
chr8 (161-197)||(24408664-24408700)
chr8 (161-197)||(25875705-25875741)
chr8 (161-197)||(30474291-30474327)
chr8 (161-197)||(32111269-32111305)
chr8 (161-197)||(35122723-35122759)
chr8 (161-197)||(39997449-39997485)
chr8 (161-197)||(44832595-44832631)
chr8 (161-197)||(44836403-44836439)
chr8 (161-197)||(44836693-44836729)
[»] scaffold0003 (1 HSPs)
scaffold0003 (161-197)||(38305-38341)
[»] chr7 (10 HSPs)
chr7 (161-197)||(3841050-3841086)
chr7 (161-197)||(7889788-7889824)
chr7 (161-197)||(17178646-17178682)
chr7 (161-197)||(21804980-21805016)
chr7 (161-197)||(27138936-27138972)
chr7 (161-197)||(27903820-27903856)
chr7 (161-197)||(31096484-31096520)
chr7 (161-197)||(33917355-33917391)
chr7 (161-197)||(42242562-42242598)
chr7 (161-197)||(43933951-43933987)
[»] chr6 (10 HSPs)
chr6 (161-197)||(2266553-2266589)
chr6 (161-197)||(3588933-3588969)
chr6 (161-197)||(3591956-3591992)
chr6 (161-197)||(3592681-3592717)
chr6 (161-197)||(10585137-10585173)
chr6 (161-197)||(12597673-12597709)
chr6 (161-197)||(17202217-17202253)
chr6 (161-197)||(19997449-19997485)
chr6 (161-197)||(27448435-27448471)
chr6 (161-197)||(33645727-33645763)
[»] chr5 (16 HSPs)
chr5 (161-197)||(2399348-2399384)
chr5 (161-197)||(6940906-6940942)
chr5 (161-197)||(14141515-14141551)
chr5 (161-197)||(16526715-16526751)
chr5 (161-197)||(17373572-17373608)
chr5 (161-197)||(20874473-20874509)
chr5 (161-197)||(24223572-24223608)
chr5 (161-197)||(25099643-25099679)
chr5 (161-197)||(25158732-25158768)
chr5 (161-197)||(29275409-29275445)
chr5 (161-197)||(33375549-33375585)
chr5 (161-197)||(33570716-33570752)
chr5 (161-197)||(34107746-34107782)
chr5 (161-197)||(34110435-34110471)
chr5 (161-197)||(38247273-38247309)
chr5 (161-197)||(40176902-40176938)
[»] chr3 (9 HSPs)
chr3 (161-197)||(12263984-12264020)
chr3 (161-197)||(20671035-20671071)
chr3 (161-197)||(21098088-21098124)
chr3 (161-197)||(34121140-34121176)
chr3 (161-197)||(38654336-38654372)
chr3 (161-197)||(39146232-39146268)
chr3 (161-197)||(49477993-49478029)
chr3 (161-197)||(49506744-49506780)
chr3 (161-197)||(49672347-49672383)


Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 7 - 246
Target Start/End: Original strand, 48033387 - 48033626
Alignment:
Q  7 tatattattcttccttaacttcactttttcacttcacagtcacatgcatgcatcttccattgccgtaaatttctaactctttcttaatctcactatatgt 106  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48033387 tatattcttcttccttaacttcactttttcacttcacagtcacatgcatgcatcttccattgccgtaaatttctaactctttcttaatctcactatatgt 48033486  T
Q  107 atttctaaattggaatatagtagtaataatatgctttgctgtattcaatgaatttgatgcccttcaactgtttgttgaaatgtttcttccaactggtttt 206  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |    
T  48033487 aattctaaattggaatatagtagtaataatatgctttgctgtattcaatgactttgatgcccttcaactgtttgttgaaatgtttcttccaactggttat 48033586  T
Q  207 acgtggtgaaaatctcttttctcgtttctttttctgatat 246  Q
    | ||||||||||||||||||||| ||||||||||||||||    
T  48033587 aagtggtgaaaatctcttttctcttttctttttctgatat 48033626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 201
Target Start/End: Original strand, 48057980 - 48058018
Alignment:
Q  163 atgcccttcaactgtttgttgaaatgtttcttccaactg 201  Q
    |||||||| |||||||||||| |||||||||||||||||    
T  48057980 atgccctttaactgtttgttggaatgtttcttccaactg 48058018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 1231630 - 1231594
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  1231630 tgataccctttaactgtttgttgaaatgtttcttcca 1231594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 2951774 - 2951810
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  2951774 tgataccctttaactgtttgttgaaatgtttcttcca 2951810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 4266202 - 4266166
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  4266202 tgataccctttaactgtttgttgaaatgtttcttcca 4266166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 7333768 - 7333732
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  7333768 tgataccctttaactgtttgttgaaatgtttcttcca 7333732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 18706911 - 18706947
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  18706911 tgataccctttaactgtttgttgaaatgtttcttcca 18706947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 19764952 - 19764988
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  19764952 tgataccctttaactgtttgttgaaatgtttcttcca 19764988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 19768287 - 19768251
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  19768287 tgataccctttaactgtttgttgaaatgtttcttcca 19768251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 23483110 - 23483146
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  23483110 tgataccctttaactgtttgttgaaatgtttcttcca 23483146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 195
Target Start/End: Complemental strand, 29814855 - 29814823
Alignment:
Q  163 atgcccttcaactgtttgttgaaatgtttcttc 195  Q
    |||||||| ||||||||||||||||||||||||    
T  29814855 atgccctttaactgtttgttgaaatgtttcttc 29814823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 35613889 - 35613853
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  35613889 tgataccctttaactgtttgttgaaatgtttcttcca 35613853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 35614639 - 35614603
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  35614639 tgataccctttaactgtttgttgaaatgtttcttcca 35614603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 38914155 - 38914191
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  38914155 tgataccctttaactgtttgttgaaatgtttcttcca 38914191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 41531003 - 41531039
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  41531003 tgataccctttaactgtttgttgaaatgtttcttcca 41531039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 52036448 - 52036484
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  52036448 tgataccctttaactgtttgttgaaatgtttcttcca 52036484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 52687519 - 52687555
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  52687519 tgataccctttaactgtttgttgaaatgtttcttcca 52687555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 54624784 - 54624744
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttccaactg 201  Q
    |||||||||| |||||||||||||||||||||| |||||||    
T  54624784 tgatgccctttaactgtttgttgaaatgtttctaccaactg 54624744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 12090868 - 12090904
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  12090868 tgataccctttaactgtttgttgaaatgtttcttcca 12090904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 14148769 - 14148805
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  14148769 tgataccctttaactgtttgttgaaatgtttcttcca 14148805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 16918296 - 16918332
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  16918296 tgataccctttaactgtttgttgaaatgtttcttcca 16918332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 30825330 - 30825366
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  30825330 tgataccctttaactgtttgttgaaatgtttcttcca 30825366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 31966377 - 31966413
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  31966377 tgataccctttaactgtttgttgaaatgtttcttcca 31966413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 37591208 - 37591244
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  37591208 tgataccctttaactgtttgttgaaatgtttcttcca 37591244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 39058760 - 39058796
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  39058760 tgataccctttaactgtttgttgaaatgtttcttcca 39058796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 41386947 - 41386911
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  41386947 tgataccctttaactgtttgttgaaatgtttcttcca 41386911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 44376485 - 44376521
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  44376485 tgataccctttaactgtttgttgaaatgtttcttcca 44376521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 47143208 - 47143244
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  47143208 tgataccctttaactgtttgttgaaatgtttcttcca 47143244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 52098598 - 52098634
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  52098598 tgataccctttaactgtttgttgaaatgtttcttcca 52098634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 52434445 - 52434409
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  52434445 tgataccctttaactgtttgttgaaatgtttcttcca 52434409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 20597511 - 20597551
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttccaactg 201  Q
    |||| ||||| ||||||||||||||||||||||||||||||    
T  20597511 tgataccctttaactgtttgttgaaatgtttcttccaactg 20597551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 6120372 - 6120336
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  6120372 tgataccctttaactgtttgttgaaatgtttcttcca 6120336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 16214646 - 16214610
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  16214646 tgataccctttaactgtttgttgaaatgtttcttcca 16214610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 18351372 - 18351336
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  18351372 tgataccctttaactgtttgttgaaatgtttcttcca 18351336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 31423829 - 31423793
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  31423829 tgataccctttaactgtttgttgaaatgtttcttcca 31423793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 34008119 - 34008155
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  34008119 tgataccctttaactgtttgttgaaatgtttcttcca 34008155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 36279861 - 36279897
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  36279861 tgataccctttaactgtttgttgaaatgtttcttcca 36279897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 41663057 - 41663021
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  41663057 tgataccctttaactgtttgttgaaatgtttcttcca 41663021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 41664331 - 41664295
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  41664331 tgataccctttaactgtttgttgaaatgtttcttcca 41664295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 42055073 - 42055037
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  42055073 tgataccctttaactgtttgttgaaatgtttcttcca 42055037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 44901903 - 44901867
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  44901903 tgataccctttaactgtttgttgaaatgtttcttcca 44901867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 201
Target Start/End: Original strand, 32976648 - 32976677
Alignment:
Q  172 aactgtttgttgaaatgtttcttccaactg 201  Q
    ||||||||||||||||||||||||||||||    
T  32976648 aactgtttgttgaaatgtttcttccaactg 32976677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 996223 - 996259
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  996223 tgataccctttaactgtttgttgaaatgtttcttcca 996259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 6299428 - 6299464
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  6299428 tgataccctttaactgtttgttgaaatgtttcttcca 6299464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 10477758 - 10477722
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  10477758 tgataccctttaactgtttgttgaaatgtttcttcca 10477722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 11725011 - 11724975
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  11725011 tgataccctttaactgtttgttgaaatgtttcttcca 11724975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 18175202 - 18175166
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  18175202 tgataccctttaactgtttgttgaaatgtttcttcca 18175166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 18997521 - 18997485
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  18997521 tgataccctttaactgtttgttgaaatgtttcttcca 18997485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 19240485 - 19240449
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||||||||| |||||||||||||| |||||||||||    
T  19240485 tgatgccctttaactgtttgttgaattgtttcttcca 19240449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 19313669 - 19313633
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||||||||| |||||||||||||| |||||||||||    
T  19313669 tgatgccctttaactgtttgttgaattgtttcttcca 19313633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 23353978 - 23354014
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||||||||| || |||||||||||||||||||||||    
T  23353978 tgatgccctttaaatgtttgttgaaatgtttcttcca 23354014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 24408700 - 24408664
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  24408700 tgataccctttaactgtttgttgaaatgtttcttcca 24408664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 25875705 - 25875741
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  25875705 tgataccctttaactgtttgttgaaatgtttcttcca 25875741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 30474291 - 30474327
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  30474291 tgataccctttaactgtttgttgaaatgtttcttcca 30474327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 32111269 - 32111305
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  32111269 tgataccctttaactgtttgttgaaatgtttcttcca 32111305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 35122723 - 35122759
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  35122723 tgataccctttaactgtttgttgaaatgtttcttcca 35122759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 39997485 - 39997449
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  39997485 tgataccctttaactgtttgttgaaatgtttcttcca 39997449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 44832595 - 44832631
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  44832595 tgataccctttaactgtttgttgaaatgtttcttcca 44832631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 44836439 - 44836403
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  44836439 tgataccctttaactgtttgttgaaatgtttcttcca 44836403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 44836729 - 44836693
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  44836729 tgataccctttaactgtttgttgaaatgtttcttcca 44836693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 38305 - 38341
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  38305 tgataccctttaactgtttgttgaaatgtttcttcca 38341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 3841050 - 3841086
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  3841050 tgataccctttaactgtttgttgaaatgtttcttcca 3841086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 7889788 - 7889824
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  7889788 tgataccctttaactgtttgttgaaatgtttcttcca 7889824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 17178646 - 17178682
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  17178646 tgataccctttaactgtttgttgaaatgtttcttcca 17178682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 21804980 - 21805016
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  21804980 tgataccctttaactgtttgttgaaatgtttcttcca 21805016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 27138936 - 27138972
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  27138936 tgataccctttaactgtttgttgaaatgtttcttcca 27138972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 27903820 - 27903856
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  27903820 tgataccctttaactgtttgttgaaatgtttcttcca 27903856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 31096520 - 31096484
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  31096520 tgataccctttaactgtttgttgaaatgtttcttcca 31096484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 33917355 - 33917391
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  33917355 tgataccctttaactgtttgttgaaatgtttcttcca 33917391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 42242562 - 42242598
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  42242562 tgataccctttaactgtttgttgaaatgtttcttcca 42242598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 43933951 - 43933987
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  43933951 tgataccctttaactgtttgttgaaatgtttcttcca 43933987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 2266589 - 2266553
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  2266589 tgataccctttaactgtttgttgaaatgtttcttcca 2266553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 3588969 - 3588933
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  3588969 tgataccctttaactgtttgttgaaatgtttcttcca 3588933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 3591992 - 3591956
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  3591992 tgataccctttaactgtttgttgaaatgtttcttcca 3591956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 3592717 - 3592681
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  3592717 tgataccctttaactgtttgttgaaatgtttcttcca 3592681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 10585137 - 10585173
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  10585137 tgataccctttaactgtttgttgaaatgtttcttcca 10585173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 12597673 - 12597709
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  12597673 tgataccctttaactgtttgttgaaatgtttcttcca 12597709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 17202253 - 17202217
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  17202253 tgataccctttaactgtttgttgaaatgtttcttcca 17202217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 19997485 - 19997449
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  19997485 tgataccctttaactgtttgttgaaatgtttcttcca 19997449  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 27448471 - 27448435
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  27448471 tgataccctttaactgtttgttgaaatgtttcttcca 27448435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 33645763 - 33645727
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  33645763 tgataccctttaactgtttgttgaaatgtttcttcca 33645727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 2399348 - 2399384
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  2399348 tgataccctttaactgtttgttgaaatgtttcttcca 2399384  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 6940906 - 6940942
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  6940906 tgataccctttaactgtttgttgaaatgtttcttcca 6940942  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 14141515 - 14141551
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  14141515 tgataccctttaactgtttgttgaaatgtttcttcca 14141551  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 16526715 - 16526751
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  16526715 tgataccctttaactgtttgttgaaatgtttcttcca 16526751  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 17373572 - 17373608
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  17373572 tgataccctttaactgtttgttgaaatgtttcttcca 17373608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 20874509 - 20874473
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  20874509 tgataccctttaactgtttgttgaaatgtttcttcca 20874473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 24223572 - 24223608
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  24223572 tgataccctttaactgtttgttgaaatgtttcttcca 24223608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 25099643 - 25099679
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  25099643 tgataccctttaactgtttgttgaaatgtttcttcca 25099679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 25158732 - 25158768
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  25158732 tgataccctttaactgtttgttgaaatgtttcttcca 25158768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 29275445 - 29275409
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  29275445 tgataccctttaactgtttgttgaaatgtttcttcca 29275409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 33375585 - 33375549
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  33375585 tgataccctttaactgtttgttgaaatgtttcttcca 33375549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 33570716 - 33570752
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  33570716 tgataccctttaactgtttgttgaaatgtttcttcca 33570752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 34107746 - 34107782
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  34107746 tgataccctttaactgtttgttgaaatgtttcttcca 34107782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 34110471 - 34110435
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  34110471 tgataccctttaactgtttgttgaaatgtttcttcca 34110435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 38247273 - 38247309
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  38247273 tgataccctttaactgtttgttgaaatgtttcttcca 38247309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 40176938 - 40176902
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  40176938 tgataccctttaactgtttgttgaaatgtttcttcca 40176902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 12264020 - 12263984
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  12264020 tgataccctttaactgtttgttgaaatgtttcttcca 12263984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 20671071 - 20671035
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  20671071 tgataccctttaactgtttgttgaaatgtttcttcca 20671035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 21098124 - 21098088
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  21098124 tgataccctttaactgtttgttgaaatgtttcttcca 21098088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 34121176 - 34121140
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  34121176 tgataccctttaactgtttgttgaaatgtttcttcca 34121140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 38654336 - 38654372
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  38654336 tgataccctttaactgtttgttgaaatgtttcttcca 38654372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 39146268 - 39146232
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  39146268 tgataccctttaactgtttgttgaaatgtttcttcca 39146232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 49478029 - 49477993
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  49478029 tgataccctttaactgtttgttgaaatgtttcttcca 49477993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 49506744 - 49506780
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  49506744 tgataccctttaactgtttgttgaaatgtttcttcca 49506780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 49672383 - 49672347
Alignment:
Q  161 tgatgcccttcaactgtttgttgaaatgtttcttcca 197  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  49672383 tgataccctttaactgtttgttgaaatgtttcttcca 49672347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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