View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17055_low_23 (Length: 244)
Name: NF17055_low_23
Description: NF17055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17055_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 171; Significance: 6e-92; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 16 - 186
Target Start/End: Original strand, 2583555 - 2583725
Alignment:
| Q |
16 |
gatttaaataaatctgattaatcctaaagtttataacagtttattcatgagagaacattaaagaaaacaatagtagcttattttaatttgactttatcaa |
115 |
Q |
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| T |
2583555 |
gatttaaataaatctgattaatcctaaagtttataacagtttattcatgagagaacattaaagaaaacaatagtagcttattttaatttgactttatcaa |
2583654 |
T |
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| Q |
116 |
ctttgtgatgcagaatgttattgtattgttatatttggcatgtgcctcttctgttgcttgcttcctaggtg |
186 |
Q |
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| T |
2583655 |
ctttgtgatgcagaatgttattgtattgttatatttggcatgtgcctcttctgttgcttgcttcctaggtg |
2583725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 33 - 185
Target Start/End: Original strand, 2616743 - 2616896
Alignment:
| Q |
33 |
ttaatcctaaagtttat-aacagtttattcatgagagaacattaaagaaaacaatagtagcttattttaatttgactttatcaactttgtgatgcagaat |
131 |
Q |
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| T |
2616743 |
ttaatcctaaatttttttaacagtttcttcatgagagaacattaaagaaaacgatagtagcttattttaatttgactttgttaactttgtgatgcagaat |
2616842 |
T |
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| Q |
132 |
gttattgtattgttatatttggcatgtgcctcttctgttgcttgcttcctaggt |
185 |
Q |
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| T |
2616843 |
gctgttgttttgttatatttggcatgtgcctcttgtgttgcttgcttcctaggt |
2616896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 103 - 186
Target Start/End: Complemental strand, 2646850 - 2646767
Alignment:
| Q |
103 |
ttgactttatcaactttgtgatgcagaatgttattgtattgttatatttggcatgtgcctcttctgttgcttgcttcctaggtg |
186 |
Q |
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| T |
2646850 |
ttgactttgtcaactttgtgatgcagaatgctattgttttgttatatttggcatgtgcttcttttgttgcttgcttcctaggtg |
2646767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 47 - 186
Target Start/End: Complemental strand, 2679565 - 2679415
Alignment:
| Q |
47 |
tataacagtttattcatgagagaacattaaagaaaacaata----gtagc-ttat------tttaatttgactttatcaactttgtgatgcagaatgtta |
135 |
Q |
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| T |
2679565 |
tataacagtttcttcatgagagaacattaaagaaaataatatatagtagcattataggatatttggtttgactttattaactttgtgatgcagaatgctc |
2679466 |
T |
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| Q |
136 |
ttgtattgttatatttggcatgtgcctcttctgttgcttgcttcctaggtg |
186 |
Q |
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| T |
2679465 |
ttgttttgttatatttggcatgtgcctcttttgctgcttgcttcctaggtg |
2679415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 2574668 - 2574583
Alignment:
| Q |
102 |
tttgactttatcaa-ctttgtgatgcagaatgttattgtattgttatatttggcatgtgcctcttctgttgcttgcttcctaggtg |
186 |
Q |
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| T |
2574668 |
tttgactttattaaactttttgatgcagaatgctgttctttttttatatttggcatgtgcctcttttgttgcttgcttcctaggtg |
2574583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 186
Target Start/End: Original strand, 2447137 - 2447221
Alignment:
| Q |
102 |
tttgactttatcaactttgtgatgcagaatgttattgtattgttatatttggcatgtgcctcttctgttgcttgcttcctaggtg |
186 |
Q |
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| T |
2447137 |
tttgactttatcaactttatgatgcagaatgctgttattgtgttatatttggcgtgtgcctctttttttctttgcttcctaggtg |
2447221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 2602675 - 2602591
Alignment:
| Q |
102 |
tttgactttatcaactttgtgatgcagaatgttattgtattgttatatttggcatgtgcctcttctgttgcttgcttcctaggtg |
186 |
Q |
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||||||||||| |||||| ||||||| |||| | || | || |||||| |||| |||||||||| ||||||||||||||||||| |
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| T |
2602675 |
tttgactttattaactttttgatgcacaatgctgttctttttttatatctggcttgtgcctctttcgttgcttgcttcctaggtg |
2602591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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