View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17055_low_24 (Length: 239)

Name: NF17055_low_24
Description: NF17055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17055_low_24
NF17055_low_24
[»] chr1 (22 HSPs)
chr1 (1-129)||(48033908-48034036)
chr1 (1-122)||(37275239-37275360)
chr1 (8-128)||(4551079-4551199)
chr1 (1-128)||(39873291-39873418)
chr1 (1-128)||(26060197-26060327)
chr1 (1-123)||(38680884-38681006)
chr1 (1-126)||(2351197-2351322)
chr1 (8-92)||(32512083-32512167)
chr1 (8-125)||(12482352-12482468)
chr1 (7-107)||(30111783-30111883)
chr1 (1-99)||(4081205-4081303)
chr1 (1-98)||(3077048-3077145)
chr1 (3-123)||(15177001-15177121)
chr1 (175-224)||(48034081-48034130)
chr1 (46-122)||(22346215-22346291)
chr1 (46-122)||(34874619-34874695)
chr1 (72-122)||(27209699-27209749)
chr1 (72-128)||(49508706-49508762)
chr1 (55-101)||(8904029-8904075)
chr1 (1-98)||(21029326-21029421)
chr1 (72-122)||(28850888-28850938)
chr1 (72-122)||(41147456-41147506)
[»] chr4 (21 HSPs)
chr4 (1-127)||(16559970-16560098)
chr4 (4-108)||(31463288-31463392)
chr4 (1-108)||(22665689-22665796)
chr4 (1-124)||(54400217-54400338)
chr4 (15-128)||(2804368-2804479)
chr4 (8-125)||(19934443-19934560)
chr4 (1-128)||(51581431-51581559)
chr4 (1-98)||(27628872-27628969)
chr4 (4-101)||(29533537-29533632)
chr4 (1-98)||(33894081-33894178)
chr4 (1-126)||(26805657-26805782)
chr4 (1-97)||(54357728-54357824)
chr4 (72-122)||(27839287-27839337)
chr4 (46-122)||(26040341-26040417)
chr4 (2-128)||(3180531-3180657)
chr4 (72-122)||(35808377-35808427)
chr4 (72-122)||(55669817-55669867)
chr4 (46-122)||(2362683-2362759)
chr4 (1-98)||(7031615-7031710)
chr4 (1-47)||(49482959-49483005)
chr4 (46-122)||(51290482-51290558)
[»] chr3 (13 HSPs)
chr3 (8-127)||(46055749-46055868)
chr3 (3-113)||(38611367-38611477)
chr3 (2-97)||(36473310-36473405)
chr3 (1-85)||(38014655-38014739)
chr3 (15-128)||(20499354-20499466)
chr3 (12-128)||(52313438-52313553)
chr3 (3-99)||(21195283-21195379)
chr3 (56-122)||(29915556-29915622)
chr3 (56-122)||(29964709-29964775)
chr3 (72-122)||(44570367-44570417)
chr3 (72-122)||(48136704-48136754)
chr3 (3-52)||(32734551-32734600)
chr3 (49-106)||(45899540-45899597)
[»] chr7 (17 HSPs)
chr7 (3-129)||(44207644-44207771)
chr7 (1-119)||(16492005-16492123)
chr7 (1-123)||(3408198-3408320)
chr7 (1-125)||(675087-675210)
chr7 (1-108)||(45174488-45174595)
chr7 (1-100)||(39321177-39321278)
chr7 (1-127)||(10980950-10981076)
chr7 (3-107)||(36856554-36856658)
chr7 (1-129)||(35729403-35729533)
chr7 (1-98)||(5787266-5787363)
chr7 (72-122)||(40763327-40763377)
chr7 (46-122)||(5240313-5240389)
chr7 (46-120)||(43567489-43567563)
chr7 (72-122)||(48454803-48454853)
chr7 (13-93)||(24620778-24620858)
chr7 (46-122)||(5347953-5348029)
chr7 (46-122)||(29034739-29034815)
[»] chr2 (19 HSPs)
chr2 (1-126)||(9991417-9991542)
chr2 (1-127)||(6084713-6084840)
chr2 (1-100)||(41464292-41464391)
chr2 (1-125)||(32354707-32354831)
chr2 (3-128)||(40356427-40356551)
chr2 (1-78)||(3095064-3095141)
chr2 (3-71)||(36402473-36402541)
chr2 (26-99)||(18904248-18904321)
chr2 (33-128)||(5711165-5711260)
chr2 (77-128)||(3094867-3094918)
chr2 (72-122)||(765131-765181)
chr2 (72-122)||(39401516-39401566)
chr2 (72-123)||(16361644-16361695)
chr2 (72-123)||(39085772-39085823)
chr2 (72-122)||(17056039-17056089)
chr2 (72-122)||(17068486-17068536)
chr2 (72-122)||(17074469-17074519)
chr2 (77-122)||(23685644-23685689)
chr2 (46-122)||(862641-862717)
[»] chr6 (6 HSPs)
chr6 (7-126)||(6614856-6614975)
chr6 (1-128)||(22616875-22617000)
chr6 (1-104)||(31765801-31765904)
chr6 (46-122)||(29692322-29692398)
chr6 (72-122)||(26572063-26572113)
chr6 (46-122)||(10855484-10855560)
[»] chr5 (13 HSPs)
chr5 (1-128)||(33338215-33338341)
chr5 (5-128)||(11680185-11680305)
chr5 (3-126)||(24397490-24397611)
chr5 (10-128)||(41530402-41530520)
chr5 (3-98)||(28273373-28273468)
chr5 (35-128)||(19804488-19804581)
chr5 (1-98)||(5108410-5108506)
chr5 (7-125)||(8212993-8213110)
chr5 (46-122)||(15915884-15915960)
chr5 (46-122)||(35653236-35653312)
chr5 (72-118)||(338749-338795)
chr5 (49-122)||(39567958-39568031)
chr5 (46-122)||(4962498-4962573)
[»] chr8 (8 HSPs)
chr8 (1-105)||(36054980-36055084)
chr8 (1-117)||(10635953-10636069)
chr8 (4-108)||(40451920-40452024)
chr8 (7-102)||(24286509-24286604)
chr8 (1-123)||(44159348-44159470)
chr8 (1-94)||(31452079-31452171)
chr8 (57-122)||(19389291-19389356)
chr8 (8-100)||(28280431-28280523)


Alignment Details
Target: chr1 (Bit Score: 113; Significance: 2e-57; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 48033908 - 48034036
Alignment:
Q  1 acattggaaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  48033908 acattggaaacaacaatttataaactttttacaagttggcttgaccacttttcttctttttccaacacaaaatttctatttttgttcctttatctaatgc 48034007  T
Q  101 cccaagggaaatggttagcatttcccttc 129  Q
    |||||||| |||| |||||||||||||||    
T  48034008 cccaagggcaatgattagcatttcccttc 48034036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 37275360 - 37275239
Alignment:
Q  1 acattggaaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgc 100  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||| ||||  ||||||||||| ||||||||||||||||||| ||||||||||||||    
T  37275360 acattggaaacaacaatttataaactttttataagttgtcttgaccattttttatcattttccaatacaaaatttctatttttgtacctttatccaatgc 37275261  T
Q  101 cccaagggaaatggttagcatt 122  Q
    |  ||||| |||||||||||||    
T  37275260 ctgaagggcaatggttagcatt 37275239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 8 - 128
Target Start/End: Original strand, 4551079 - 4551199
Alignment:
Q  8 aaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgccccaagg 107  Q
    ||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||  |||||    
T  4551079 aaacaacaatttataaactttttacaagtcgacttgaccacttttcatcattttccaacacaaaatttctatttttgttccattatccaatgcatcaagg 4551178  T
Q  108 gaaatggttagcatttccctt 128  Q
      |||||||| |||| |||||    
T  4551179 acaatggttaacattaccctt 4551199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 39873418 - 39873291
Alignment:
Q  1 acattggaaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgc 100  Q
    |||||||||||||||||||||||| ||||||||||||| |||||| ||||||  ||||||||||||| ||||||||||||||||||||||||| |||| |    
T  39873418 acattggaaacaacaatttataaattttttacaagttgacttgactactttttatcattttccaacataaaatttctatttttgttcctttattcaatac 39873319  T
Q  101 cccaagggaaatggttagcatttccctt 128  Q
    | ||| || |||||||| ||||| ||||    
T  39873318 ctcaaaggcaatggttaacattttcctt 39873291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 26060197 - 26060327
Alignment:
Q  1 acattggaaacaacaatttataaactttttacaagttggcttgaccacttttct----tcattttccaacacaaaatttctatttttgttcctttatcca 96  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||| |    ||||||| || || ||||||||||||||| || | |||||||    
T  26060197 acattggaaacaacaatttataaactttttacaagttgatttgaccactttttttttatcatttttcagcataaaatttctatttttatttc-ttatcca 26060295  T
Q  97 atgccccaagggaaatggttagcatttccctt 128  Q
    |||| ||||||| |||||||||||||||||||    
T  26060296 atgctccaagggcaatggttagcatttccctt 26060327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 38681006 - 38680884
Alignment:
Q  1 acattggaaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgc 100  Q
    |||||||||||||||||||||||| ||||||||| ||  |||||| | ||||  | ||||||||||||||||||| ||||  ||||||||||||||||||    
T  38681006 acattggaaacaacaatttataaattttttacaaattaacttgacaattttttattattttccaacacaaaatttttattgatgttcctttatccaatgc 38680907  T
Q  101 cccaagggaaatggttagcattt 123  Q
    |||||| | ||||||||||||||    
T  38680906 cccaagagcaatggttagcattt 38680884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 2351322 - 2351197
Alignment:
Q  1 acattggaaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgc 100  Q
    ||||||||||||||||||| ||||||||||| |||||| |||||||| ||||  ||||||| ||||||||||||| |||||||||| |||||||||||||    
T  2351322 acattggaaacaacaatttgtaaactttttataagttgacttgaccattttttatcatttttcaacacaaaatttttatttttgtttctttatccaatgc 2351223  T
Q  101 cccaagggaaatggttagcatttccc 126  Q
      |||||| | |  ||||||||||||    
T  2351222 atcaagggcactctttagcatttccc 2351197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 32512083 - 32512167
Alignment:
Q  8 aaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttccttta 92  Q
    ||||||||||||||||| ||||||||||||| ||||| |||||||  ||||||||||||||||||||||||||||||||||||||    
T  32512083 aaacaacaatttataaaatttttacaagttgacttgatcactttttatcattttccaacacaaaatttctatttttgttccttta 32512167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 12482468 - 12482352
Alignment:
Q  8 aaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgccccaagg 107  Q
    |||||||||||| ||||||||||||||||||  |||| |||||||  ||||||||||||||||||||| ||||||||||||||||||||||  |||||      
T  12482468 aaacaacaattt-taaactttttacaagttgatttgatcactttttatcattttccaacacaaaatttttatttttgttcctttatccaatatcccaaaa 12482370  T
Q  108 gaaatggttagcatttcc 125  Q
    |  |||||||||||||||    
T  12482369 gccatggttagcatttcc 12482352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 7 - 107
Target Start/End: Original strand, 30111783 - 30111883
Alignment:
Q  7 gaaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgccccaag 106  Q
    ||||||||||||| |||| |||||| |||||| |||||||||||||  ||||||||| ||||||||||| |||||||||||| |||||||||||| ||||    
T  30111783 gaaacaacaatttgtaaattttttataagttgacttgaccactttttatcattttccgacacaaaatttgtatttttgttcccttatccaatgcctcaag 30111882  T
Q  107 g 107  Q
    |    
T  30111883 g 30111883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 4081303 - 4081205
Alignment:
Q  1 acattggaaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatg 99  Q
    |||||||||| ||||||||| |||||||||| || ||  |||||||||||||| ||| ||||||||||| |||||||||||||||| ||||||||||||    
T  4081303 acattggaaataacaatttaaaaactttttataaatttacttgaccacttttcatcactttccaacacataatttctatttttgtttctttatccaatg 4081205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 3077145 - 3077048
Alignment:
Q  1 acattggaaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaat 98  Q
    |||||| |||||| |||||||||| ||||||||||||   ||||||||||||  | ||||||||||||||||||||||||||| ||||||||||||||    
T  3077145 acattgtaaacaataatttataaattttttacaagttaatttgaccactttttattattttccaacacaaaatttctatttttattcctttatccaat 3077048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 123
Target Start/End: Complemental strand, 15177121 - 15177001
Alignment:
Q  3 attggaaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgccc 102  Q
    |||| ||||||| ||||||||| ||||||||||||  ||| |||| ||||  ||||| | ||||||||||||| |||||||||| ||||||||||||||     
T  15177121 attgaaaacaacgatttataaattttttacaagttaacttaaccattttttatcattgttcaacacaaaatttttatttttgtttctttatccaatgcct 15177022  T
Q  103 caagggaaatggttagcattt 123  Q
    |||||| |||| ||| |||||    
T  15177021 caagggcaatgattaacattt 15177001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 175 - 224
Target Start/End: Original strand, 48034081 - 48034130
Alignment:
Q  175 ccttcaaaggtttgacgagtgagctatgtaggatttccaactgctgaaat 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48034081 ccttcaaaggtttgacgagtgagctatgtaggatttccaactgctgaaat 48034130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 122
Target Start/End: Complemental strand, 22346291 - 22346215
Alignment:
Q  46 cacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgccccaagggaaatggttagcatt 122  Q
    ||||||||  |||||| ||| || | |||||||||||| |||| |||||||| |||||||||| |||||||||||||    
T  22346291 cacttttcaccatttttcaatactatatttctatttttattcccttatccaaagccccaagggcaatggttagcatt 22346215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 122
Target Start/End: Original strand, 34874619 - 34874695
Alignment:
Q  46 cacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgccccaagggaaatggttagcatt 122  Q
    ||||||||  ||||||||||  | | |||||||||||| | || ||||||||||||||||||| |||||||||||||    
T  34874619 cacttttcaccattttccaatgctatatttctatttttatccccttatccaatgccccaagggcaatggttagcatt 34874695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 27209749 - 27209699
Alignment:
Q  72 atttctatttttgttcctttatccaatgccccaagggaaatggttagcatt 122  Q
    |||||||||||| | |||||||||||||||||||||  |||||||||||||    
T  27209749 atttctatttttatccctttatccaatgccccaaggacaatggttagcatt 27209699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 128
Target Start/End: Complemental strand, 49508762 - 49508706
Alignment:
Q  72 atttctatttttgttcctttatccaatgccccaagggaaatggttagcatttccctt 128  Q
    |||||||||||| | || ||||||||||||||||||| |||||||| ||||| ||||    
T  49508762 atttctatttttatccccttatccaatgccccaagggcaatggttaacattttcctt 49508706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 8904029 - 8904075
Alignment:
Q  55 tcattttccaacacaaaatttctatttttgttcctttatccaatgcc 101  Q
    ||||||| ||||||||||||| ||||||||||| | |||||||||||    
T  8904029 tcatttttcaacacaaaatttttatttttgttcatatatccaatgcc 8904075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 21029326 - 21029421
Alignment:
Q  1 acattggaaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaat 98  Q
    |||||| |||||| ||||||||||| ||||| |||||| |||||  ||||||  ||| |||||||| |  ||||| |||||||||| ||| |||||||    
T  21029326 acattgaaaacaataatttataaacattttataagttgacttgataactttttatcactttccaacgc--aatttttatttttgtttcttcatccaat 21029421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 28850938 - 28850888
Alignment:
Q  72 atttctatttttgttcctttatccaatgccccaagggaaatggttagcatt 122  Q
    |||||||||||| |||  ||||| ||||||||||||| |||||||||||||    
T  28850938 atttctatttttattctcttatctaatgccccaagggcaatggttagcatt 28850888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 41147506 - 41147456
Alignment:
Q  72 atttctatttttgttcctttatccaatgccccaagggaaatggttagcatt 122  Q
    |||||||||||| | || ||||||||||||||||||  |||||||||||||    
T  41147506 atttctatttttatccccttatccaatgccccaaggacaatggttagcatt 41147456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 16560098 - 16559970
Alignment:
Q  1 acattggaaacaacaatttataaactttttacaagttggcttgaccacttttctt--cattttccaacacaaaatttctatttttgttcctttatccaat 98  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| |||| ||  |||||||||||||||||||||||||||| ||||||||||||||    
T  16560098 acattggaaacaacaatttataaactttttacaagttgacttgaccattttttttatcattttccaacacaaaatttctatttttattcctttatccaat 16559999  T
Q  99 gccccaagggaaatggttagcatttccct 127  Q
    |||||||||| ||||||||||||||||||    
T  16559998 gccccaagggcaatggttagcatttccct 16559970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 4 - 108
Target Start/End: Complemental strand, 31463392 - 31463288
Alignment:
Q  4 ttggaaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgcccc 103  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||   || |||||||||||||||||||||||||||||||||||||||||||||    
T  31463392 ttggaaacaacaatttgtaaactttttacaagttgacttgaccactttttaccactttccaacacaaaatttctatttttgttcctttatccaatgcccc 31463293  T
Q  104 aaggg 108  Q
    |||||    
T  31463292 aaggg 31463288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 22665689 - 22665796
Alignment:
Q  1 acattggaaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgc 100  Q
    ||||||||||||||||||| |||||||||||||| ||| |||||||||||||  ||||||||||||| |||||||||||||||||||| |||||||||||    
T  22665689 acattggaaacaacaatttgtaaactttttacaatttgacttgaccactttttatcattttccaacagaaaatttctatttttgttcccttatccaatgc 22665788  T
Q  101 cccaaggg 108  Q
    ||||||||    
T  22665789 cccaaggg 22665796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 54400217 - 54400338
Alignment:
Q  1 acattggaaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgc 100  Q
    |||| ||||||||||||| ||||||||||||||||||| ||| |||| |||| | |||||||||||||||||||| ||||||| ||||||||||||||||    
T  54400217 acatcggaaacaacaatt-ataaactttttacaagttgacttaaccatttttat-cattttccaacacaaaatttttatttttattcctttatccaatgc 54400314  T
Q  101 cccaagggaaatggttagcatttc 124  Q
    ||| |||| |||||||||||||||    
T  54400315 cccgagggcaatggttagcatttc 54400338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 15 - 128
Target Start/End: Original strand, 2804368 - 2804479
Alignment:
Q  15 aatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgccccaagggaaatgg 114  Q
    |||||||||||||||||||||||| |||||| ||||||  ||||||||||||||||||||||||||||||||||||||| ||||  |||||||| |||||    
T  2804368 aatttataaactttttacaagttgacttgactactttttatcattttccaacacaaaatttctatttttgttcctttattcaat--cccaagggcaatgg 2804465  T
Q  115 ttagcatttccctt 128  Q
    ||| ||||| ||||    
T  2804466 ttatcattttcctt 2804479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 19934560 - 19934443
Alignment:
Q  8 aaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgccccaagg 107  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||  ||||||||||| ||||||||| ||||||||||||||| ||||||  ||||| |    
T  19934560 aaacaacaatttataaactttttacaagttgacttgaccattttttatcattttccaatacaaaatttttatttttgttcctttctccaatatcccaaag 19934461  T
Q  108 gaaatggttagcatttcc 125  Q
    | |||||||||| |||||    
T  19934460 gcaatggttagcctttcc 19934443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 51581559 - 51581431
Alignment:
Q  1 acattggaaacaacaatttataaactttttacaagttggcttgaccacttttct-tcattttccaacacaaaatttctatttttgttcctttatccaatg 99  Q
    |||||| |||||||||||| ||||  |||||||||||  ||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||    
T  51581559 acattgaaaacaacaatttgtaaatgttttacaagttaacttgaccacttttttatcactttccaacacaaaatttctatttttgttcctttatccaatg 51581460  T
Q  100 ccccaagggaaatggttagcatttccctt 128  Q
    || |||||| | |  ||||||||||||||    
T  51581459 cctcaagggcactctttagcatttccctt 51581431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 27628872 - 27628969
Alignment:
Q  1 acattggaaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaat 98  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||| ||  ||| ||||||||||| ||||||||||    
T  27628872 acattgaaaacaacaatttataaactttttacaagttgacttgaccacttttaatcattttccaacaaaatttttttatttttgttcttttatccaat 27628969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 29533632 - 29533537
Alignment:
Q  4 ttggaaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgcc 101  Q
    ||||||||||||||| ||||||||||||||||||| |||||| ||||||  ||||||||||||| |||||||||| |||| ||| |||||||||||||    
T  29533632 ttggaaacaacaatt-ataaactttttacaagttgacttgactactttttatcattttccaacaaaaaatttcta-ttttattcttttatccaatgcc 29533537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 33894081 - 33894178
Alignment:
Q  1 acattggaaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaat 98  Q
    ||||| |||||||||||||||||||||||||||| ||| ||| || ||||||  ||| | || |||||||||||| ||||||||||||||||||||||    
T  33894081 acattcgaaacaacaatttataaactttttacaaattgactttactactttttatcactatctaacacaaaatttttatttttgttcctttatccaat 33894178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 26805782 - 26805657
Alignment:
Q  1 acattggaaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgc 100  Q
    ||||||||||||||||||| ||||||||||||||| || |||||||||||||   || ||| |||||  |  |||||||||||| | | |||||||||||    
T  26805782 acattggaaacaacaatttttaaactttttacaagctgacttgaccactttttaccacttttcaacatcatttttctatttttgcttccttatccaatgc 26805683  T
Q  101 cccaagggaaatggttagcatttccc 126  Q
    || ||||| | |  ||||||||||||    
T  26805682 cctaagggcactttttagcatttccc 26805657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 54357824 - 54357728
Alignment:
Q  1 acattggaaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaa 97  Q
    |||||| ||| |||||||| |||||||||||||||||   ||||||||||||| ||| ||| |||||||  |||| |||||||||| ||||||||||    
T  54357824 acattgaaaagaacaatttgtaaactttttacaagttaatttgaccacttttcatcacttttcaacacattatttttatttttgtttctttatccaa 54357728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 27839337 - 27839287
Alignment:
Q  72 atttctatttttgttcctttatccaatgccccaagggaaatggttagcatt 122  Q
    |||||||||||| |||| ||||||||||||||||||| |||||||||||||    
T  27839337 atttctatttttattcccttatccaatgccccaagggcaatggttagcatt 27839287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 122
Target Start/End: Complemental strand, 26040417 - 26040341
Alignment:
Q  46 cacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgccccaagggaaatggttagcatt 122  Q
    ||||||||  |||||||||| || | |||||||||||| | || ||||||||||||||||||  |||||||||||||    
T  26040417 cacttttcaccattttccaatactatatttctatttttatccccttatccaatgccccaaggacaatggttagcatt 26040341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 128
Target Start/End: Original strand, 3180531 - 3180657
Alignment:
Q  2 cattggaaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgcc 101  Q
    ||||||||| |||||||| |||| |||| | ||||||  || ||||||||||  |  ||| |||||||| ||||||| |||| |||| ||| ||||||||    
T  3180531 cattggaaataacaatttttaaatttttcagaagttgaattcaccacttttcaccccttttcaacacaatatttctaattttattccattaaccaatgcc 3180630  T
Q  102 ccaagggaaatggttagcatttccctt 128  Q
    | ||||| | |  ||||||||||||||    
T  3180631 ctaagggcactctttagcatttccctt 3180657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 35808427 - 35808377
Alignment:
Q  72 atttctatttttgttcctttatccaatgccccaagggaaatggttagcatt 122  Q
    |||||||||||| | || ||||||||||||||||||| |||||||||||||    
T  35808427 atttctatttttatccccttatccaatgccccaagggcaatggttagcatt 35808377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 55669817 - 55669867
Alignment:
Q  72 atttctatttttgttcctttatccaatgccccaagggaaatggttagcatt 122  Q
    |||||||||||| | || ||||||||||||||||||| |||||||||||||    
T  55669817 atttctatttttatccccttatccaatgccccaagggcaatggttagcatt 55669867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 122
Target Start/End: Original strand, 2362683 - 2362759
Alignment:
Q  46 cacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgccccaagggaaatggttagcatt 122  Q
    ||||||||  |||||||||| || | |||| ||||||| | || |||||| |||||||||||| |||||||||||||    
T  2362683 cacttttcaccattttccaatactatatttttatttttatccccttatccgatgccccaagggcaatggttagcatt 2362759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 7031615 - 7031710
Alignment:
Q  1 acattggaaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaat 98  Q
    |||||||||||||||| || |||||||| ||  |||||  || |||||||||  ||| ||| ||||| || |||| |||||||||||| |||||||||    
T  7031615 acattggaaacaacaaattttaaactttata--agttgattttaccactttttatcacttttcaacaaaatatttttatttttgttccgttatccaat 7031710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 49483005 - 49482959
Alignment:
Q  1 acattggaaacaacaatttataaactttttacaagttggcttgacca 47  Q
    |||||| ||||||||||||||||||||||||||| |||  |||||||    
T  49483005 acattgaaaacaacaatttataaactttttacaaattgatttgacca 49482959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 122
Target Start/End: Original strand, 51290482 - 51290558
Alignment:
Q  46 cacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgccccaagggaaatggttagcatt 122  Q
    |||||||| |||||||||||  | | ||||||| |||| | || |||||||||| |||||||  |||||||||||||    
T  51290482 cacttttcatcattttccaatgctatatttctaattttatccccttatccaatgtcccaaggacaatggttagcatt 51290558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 8e-45; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 46055868 - 46055749
Alignment:
Q  8 aaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgccccaagg 107  Q
    |||||||||||||| |||||||||||||||| |||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  46055868 aaacaacaatttattaactttttacaagttgacttgactactttttatcattttccaacacaaaatttctatttttgttcctttatccaatgctccaagg 46055769  T
Q  108 gaaatggttagcatttccct 127  Q
    | ||||||||||||||||||    
T  46055768 gcaatggttagcatttccct 46055749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 3 - 113
Target Start/End: Original strand, 38611367 - 38611477
Alignment:
Q  3 attggaaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgccc 102  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||||   ||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  38611367 attggaaacaacaatttataaactttttacaagttgacttgacaactttctatcattttccaacacaaaatttctatttttcttcctttatccaatgtcc 38611466  T
Q  103 caagggaaatg 113  Q
    |||||| ||||    
T  38611467 caagggcaatg 38611477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 2 - 97
Target Start/End: Complemental strand, 36473405 - 36473310
Alignment:
Q  2 cattggaaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaa 97  Q
    ||||| ||| |||||||||||||||||||||| |||| |||||||||||||  ||||||| ||||||||| |||||||||||||||||||||||||    
T  36473405 cattgaaaataacaatttataaactttttacacgttgacttgaccactttttatcatttttcaacacaaattttctatttttgttcctttatccaa 36473310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 38014739 - 38014655
Alignment:
Q  1 acattggaaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgt 85  Q
    |||||||||||||| |||||||||||||||| |||||| |||||||||||||  ||||||||||||||||||||| |||||||||    
T  38014739 acattggaaacaacgatttataaactttttataagttgacttgaccactttttatcattttccaacacaaaatttatatttttgt 38014655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 128
Target Start/End: Original strand, 20499354 - 20499466
Alignment:
Q  15 aatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgccccaagggaaatgg 114  Q
    ||||||||||||||||| || ||| |||||  ||||||  || ||||| ||||||||||||||||||||||||||||||||||||  ||||| | ||||     
T  20499354 aatttataaactttttataaattgacttgattactttttatcgttttc-aacacaaaatttctatttttgttcctttatccaatgttccaagagcaatga 20499452  T
Q  115 ttagcatttccctt 128  Q
    ||||||||||||||    
T  20499453 ttagcatttccctt 20499466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 128
Target Start/End: Complemental strand, 52313553 - 52313438
Alignment:
Q  12 aacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgccccaagggaaa 111  Q
    |||||||||||||| ||||| ||||||  ||||||||||||  | |||||  ||||||||||||  ||||||||||||||||||||||| ||||||  ||    
T  52313553 aacaatttataaaccttttataagttgatttgaccactttttatgattttt-aacacaaaattttgatttttgttcctttatccaatgctccaaggacaa 52313455  T
Q  112 tggttagcatttccctt 128  Q
    ||||||| |||| ||||    
T  52313454 tggttagaattttcctt 52313438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 99
Target Start/End: Complemental strand, 21195379 - 21195283
Alignment:
Q  3 attggaaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatg 99  Q
    |||||||| |||||||| | ||||||| | ||||||  || |||||||||| ||| |||||||||  | ||||||||||||||||||||| ||||||    
T  21195379 attggaaataacaattttttaacttttaaaaagttgaattcaccacttttcatcactttccaacaagatatttctatttttgttcctttaaccaatg 21195283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 29915622 - 29915556
Alignment:
Q  56 cattttccaacacaaaatttctatttttgttcctttatccaatgccccaagggaaatggttagcatt 122  Q
    |||||||||| || | |||| ||||||| | || |||||||| |||||||||| |||||||||||||    
T  29915622 cattttccaatactatatttttatttttatccccttatccaacgccccaagggcaatggttagcatt 29915556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 29964775 - 29964709
Alignment:
Q  56 cattttccaacacaaaatttctatttttgttcctttatccaatgccccaagggaaatggttagcatt 122  Q
    |||||||||| || | |||| ||||||| | || |||||||| |||||||||| |||||||||||||    
T  29964775 cattttccaatactatatttttatttttatccccttatccaacgccccaagggcaatggttagcatt 29964709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 44570417 - 44570367
Alignment:
Q  72 atttctatttttgttcctttatccaatgccccaagggaaatggttagcatt 122  Q
    |||||||||||  | |||||||| ||||||||||||| |||||||||||||    
T  44570417 atttctattttgatccctttatcgaatgccccaagggcaatggttagcatt 44570367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 48136754 - 48136704
Alignment:
Q  72 atttctatttttgttcctttatccaatgccccaagggaaatggttagcatt 122  Q
    |||||||||||| |||| ||||||||| ||||||||  |||||||||||||    
T  48136754 atttctatttttattcccttatccaataccccaaggacaatggttagcatt 48136704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 32734600 - 32734551
Alignment:
Q  3 attggaaacaacaatttataaactttttacaagttggcttgaccactttt 52  Q
    ||||||||||||||||| ||| ||||||| |||||| |||||||| ||||    
T  32734600 attggaaacaacaatttctaacctttttagaagttgacttgaccattttt 32734551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 106
Target Start/End: Complemental strand, 45899597 - 45899540
Alignment:
Q  49 ttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgccccaag 106  Q
    ||||| ||||||||||| | || |||||||||||| |||  |||||||||||||||||    
T  45899597 ttttcatcattttccaatataatatttctatttttattctcttatccaatgccccaag 45899540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 3 - 129
Target Start/End: Original strand, 44207644 - 44207771
Alignment:
Q  3 attggaaacaacaatttataaactttttacaagttggcttgaccacttttcttcatttt-ccaacacaaaatttctatttttgttcctttatccaatgcc 101  Q
    ||||||||||||||||||||||  |||||||||||| |||||| ||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  44207644 attggaaacaacaatttataaaaattttacaagttgacttgactactttttatcatttttccaacacaaaatttctatttttgttcctttatccaatgcc 44207743  T
Q  102 ccaagggaaatggttagcatttcccttc 129  Q
     |||||| ||||||||||||||||||||    
T  44207744 acaagggcaatggttagcatttcccttc 44207771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 16492123 - 16492005
Alignment:
Q  1 acattggaaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgc 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||||||  |||||||| ||||||||||||||| |||||||||||||||||||||    
T  16492123 acattggaaacaacaatttataaactttttacaagttgacttgactactttttatcattttctaacacaaaatttctagttttgttcctttatccaatgc 16492024  T
Q  101 cccaagggaaatggttagc 119  Q
    || ||||| ||||||||||    
T  16492023 cctaagggcaatggttagc 16492005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 3408198 - 3408320
Alignment:
Q  1 acattggaaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgc 100  Q
    ||||||||||||||||||||| |||||||||||||||| |||||| ||||||  ||||||| ||||||||||||||||||||||||| ||||| |||||     
T  3408198 acattggaaacaacaatttattaactttttacaagttgacttgactactttttatcatttttcaacacaaaatttctatttttgttcttttattcaatgt 3408297  T
Q  101 cccaagggaaatggttagcattt 123  Q
    |||||| | ||||||||||||||    
T  3408298 cccaagagcaatggttagcattt 3408320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 675210 - 675087
Alignment:
Q  1 acattggaaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgc 100  Q
    |||||| ||||||||||||||||||||||||| |||||  ||||||||||||  | ||||||||||||||||||||||||||| || |||||||||||||    
T  675210 acattgaaaacaacaatttataaactttttactagttgatttgaccactttttattattttccaacacaaaatttctattttt-tttctttatccaatgc 675112  T
Q  101 cccaagggaaatggttagcatttcc 125  Q
    || ||||| ||||||||||||||||    
T  675111 ccaaagggcaatggttagcatttcc 675087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 45174595 - 45174488
Alignment:
Q  1 acattggaaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgc 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||||  ||||||| ||||||||||||||||| ||  ||||||||| ||||||    
T  45174595 acattggaaacaacaatttataaactttttacaagttgacttgaccaatttttatcatttttcaacacaaaatttctatcttcattcctttattcaatgc 45174496  T
Q  101 cccaaggg 108  Q
    ||||||||    
T  45174495 cccaaggg 45174488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 39321177 - 39321278
Alignment:
Q  1 acattggaaacaacaatttataaactttttacaagttggcttgaccacttttctt--cattttccaacacaaaatttctatttttgttcctttatccaat 98  Q
    ||||||||||||||||||||||||||||||||||||||  ||||| | |||| ||  |||||||||||||||||||| ||||||||||||||||||||||    
T  39321177 acattggaaacaacaatttataaactttttacaagttgatttgactattttttttatcattttccaacacaaaatttatatttttgttcctttatccaat 39321276  T
Q  99 gc 100  Q
    ||    
T  39321277 gc 39321278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 10980950 - 10981076
Alignment:
Q  1 acattggaaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgc 100  Q
    |||||| |||||| |||||||||||||||||||||||| |||||  ||||||  |||||||||||||||| ||||  ||||||||| ||||||||||||     
T  10980950 acattgaaaacaataatttataaactttttacaagttgacttgagtactttttatcattttccaacacaacattttcatttttgtttctttatccaatga 10981049  T
Q  101 cccaagggaaatggttagcatttccct 127  Q
    |||| ||  |||| |||||||||||||    
T  10981050 cccagggacaatgattagcatttccct 10981076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 107
Target Start/End: Original strand, 36856554 - 36856658
Alignment:
Q  3 attggaaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgccc 102  Q
    |||||||||||| |||| |||||||||||||||||| ||||| |||||||  ||| |||| || ||| ||||||||||||||||||||||||||||||||    
T  36856554 attggaaacaactatttgtaaactttttacaagttgacttgatcactttttatcactttctaatacacaatttctatttttgttcctttatccaatgccc 36856653  T
Q  103 caagg 107  Q
     ||||    
T  36856654 taagg 36856658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 35729533 - 35729403
Alignment:
Q  1 acattggaaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctat--ttttgttcctttatccaat 98  Q
    ||||||||||||| |||||||||| ||||||||||||| ||| |||||||||  ||| ||| ||||||| |||||||||  |||| ||||||||| ||||    
T  35729533 acattggaaacaataatttataaattttttacaagttgacttaaccactttttatcacttttcaacacacaatttctattttttttttcctttattcaat 35729434  T
Q  99 gccccaagggaaatggttagcatttcccttc 129  Q
    | |||||||| | |  ||| |||||||||||    
T  35729433 gtcccaagggcactctttaacatttcccttc 35729403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 5787266 - 5787363
Alignment:
Q  1 acattggaaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaat 98  Q
    |||||| |||||| ||||| ||||||||||| ||| || |||||||||||||  ||| ||||||||| ||| ||| ||||||||||||| ||||||||    
T  5787266 acattgaaaacaataatttgtaaactttttataagatgacttgaccactttttatcactttccaacataaattttttatttttgttcctctatccaat 5787363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 40763327 - 40763377
Alignment:
Q  72 atttctatttttgttcctttatccaatgccccaagggaaatggttagcatt 122  Q
    |||||||||||| | || ||||||||||||||||||| |||||||||||||    
T  40763327 atttctatttttatccccttatccaatgccccaagggcaatggttagcatt 40763377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 122
Target Start/End: Complemental strand, 5240389 - 5240313
Alignment:
Q  46 cacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgccccaagggaaatggttagcatt 122  Q
    ||||||||  |||||| ||| || | |||||||||||| | ||||||||||||||| |||||  |||||||||||||    
T  5240389 cacttttcaccatttttcaatactatatttctatttttatccctttatccaatgcctcaaggacaatggttagcatt 5240313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 120
Target Start/End: Complemental strand, 43567563 - 43567489
Alignment:
Q  46 cacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgccccaagggaaatggttagca 120  Q
    ||||||||  |||||||||| || | | |||||||||| |  | ||||||||||||||||||| |||||||||||    
T  43567563 cacttttcaccattttccaatactataattctatttttatctccttatccaatgccccaagggcaatggttagca 43567489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 48454853 - 48454803
Alignment:
Q  72 atttctatttttgttcctttatccaatgccccaagggaaatggttagcatt 122  Q
    |||||||||||| | || ||||||||||||||||||| |||||||| ||||    
T  48454853 atttctatttttatccccttatccaatgccccaagggtaatggttaacatt 48454803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 24620778 - 24620858
Alignment:
Q  13 acaatttataaactttttacaagttggcttgaccacttttct-tcattttccaacacaaaatttctatttttgttcctttat 93  Q
    |||||||||||| ||||||||||||| |||||  | |||| | |||||||| |||| ||||||| ||||||| |||||||||    
T  24620778 acaatttataaaatttttacaagttgacttgataatttttttatcattttctaacataaaatttttattttt-ttcctttat 24620858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 122
Target Start/End: Complemental strand, 5348029 - 5347953
Alignment:
Q  46 cacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgccccaagggaaatggttagcatt 122  Q
    |||||||| |||||||||||    | |||||||||| | |||| |||| |||||||| ||||| |||||||||||||    
T  5348029 cacttttcatcattttccaatgttatatttctatttatattcccttattcaatgccctaagggtaatggttagcatt 5347953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 122
Target Start/End: Original strand, 29034739 - 29034815
Alignment:
Q  46 cacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgccccaagggaaatggttagcatt 122  Q
    ||||||||  |||||||||| || | |||| ||||||| | || |||||||||||| |||||  |||||||||||||    
T  29034739 cacttttcaccattttccaatactatatttatatttttatccccttatccaatgcctcaaggacaatggttagcatt 29034815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 9991542 - 9991417
Alignment:
Q  1 acattggaaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgc 100  Q
    |||||| ||||||||||||||||| |||||||||||||  ||||| ||||||  ||||||||||| |||||||||||||||||||| |||||||||||||    
T  9991542 acattgaaaacaacaatttataaattttttacaagttgatttgactactttttatcattttccaatacaaaatttctatttttgtttctttatccaatgc 9991443  T
Q  101 cccaagggaaatggttagcatttccc 126  Q
    |||||||| |||||||||||||||||    
T  9991442 cccaagggcaatggttagcatttccc 9991417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 6084713 - 6084840
Alignment:
Q  1 acattggaaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttct-atttttgttcctttatccaatg 99  Q
    ||||||||||||| | |||||||||||||||||| ||| |||||||||||||  ||||||| ||| ||||| ||| | |||||||||||||||||||||     
T  6084713 acattggaaacaatattttataaactttttacaaattgacttgaccactttttatcatttttcaatacaaattttttaatttttgttcctttatccaata 6084812  T
Q  100 ccccaagggaaatggttagcatttccct 127  Q
    ||| ||||| ||||||||||||||||||    
T  6084813 ccctaagggcaatggttagcatttccct 6084840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 41464292 - 41464391
Alignment:
Q  1 acattggaaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgc 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| |||||  | ||||| ||| ||||||||||||||||| ||||||||| ||||||    
T  41464292 acattggaaacaacaatttataaactttttacaagttgacttgaccgctttttataatttttcaatacaaaatttctatttttattcctttattcaatgc 41464391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 32354831 - 32354707
Alignment:
Q  1 acattggaaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgc 100  Q
    |||||| ||| || |||||||||||||||||||||||| |||||||||||||  ||||||| |||||  || ||| |||||||||||||||||||||| |    
T  32354831 acattgtaaataataatttataaactttttacaagttgacttgaccactttttatcatttttcaacaggaattttttatttttgttcctttatccaatac 32354732  T
Q  101 cccaagggaaatggttagcatttcc 125  Q
    |||| |   ||||||||||||||||    
T  32354731 cccatgaacaatggttagcatttcc 32354707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 128
Target Start/End: Original strand, 40356427 - 40356551
Alignment:
Q  3 attggaaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgccc 102  Q
    |||||||||||||||||||||||||| ||||| ||   || |||||||||  |||||||  |||| |||||||| |||||||||||||||||||||||||    
T  40356427 attggaaacaacaatttataaactttatacaaattaatttaaccactttttatcattttttaacataaaatttc-atttttgttcctttatccaatgccc 40356525  T
Q  103 caagggaaatggttagcatttccctt 128  Q
    ||| |  |||||||| ||||||||||    
T  40356526 caaagacaatggttaacatttccctt 40356551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 3095141 - 3095064
Alignment:
Q  1 acattggaaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttcta 78  Q
    ||||| ||||||| ||||||||||||||||||||||||  ||||| | ||||  ||||||||||||||||||||||||    
T  3095141 acattagaaacaataatttataaactttttacaagttgatttgactattttttatcattttccaacacaaaatttcta 3095064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 36402473 - 36402541
Alignment:
Q  3 attggaaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaa 71  Q
    |||||||||||||||||||||||||||||||||||  |||||| ||||||  |||||||| ||||||||    
T  36402473 attggaaacaacaatttataaactttttacaagttaacttgactacttttgatcattttcgaacacaaa 36402541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 99
Target Start/End: Original strand, 18904248 - 18904321
Alignment:
Q  26 tttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatg 99  Q
    ||||||||||||| ||| || ||||||  ||||||||||||||||||||||||||||| |||| |||| |||||    
T  18904248 tttttacaagttgacttaactactttttatcattttccaacacaaaatttctattttttttcccttattcaatg 18904321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 33 - 128
Target Start/End: Original strand, 5711165 - 5711260
Alignment:
Q  33 aagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgccccaagggaaatggttagcatttccctt 128  Q
    |||||| |||||| | ||||  ||||||||||||||||||||| ||||||| |||||||||| |||| |  || || |||||||| ||||||||||    
T  5711165 aagttgacttgacaattttttatcattttccaacacaaaatttttatttttattcctttatctaatgtcttaaaggcaatggttaacatttccctt 5711260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 128
Target Start/End: Complemental strand, 3094918 - 3094867
Alignment:
Q  77 tatttttgttcctttatccaatgccccaagggaaatggttagcatttccctt 128  Q
    ||||||| |||||||||||||| |||||| || |||||||||||||||||||    
T  3094918 tatttttattcctttatccaataccccaaaggcaatggttagcatttccctt 3094867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 765181 - 765131
Alignment:
Q  72 atttctatttttgttcctttatccaatgccccaagggaaatggttagcatt 122  Q
    |||||||||||| | || ||||||||||||||||||| |||||||||||||    
T  765181 atttctatttttatccccttatccaatgccccaagggcaatggttagcatt 765131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 39401566 - 39401516
Alignment:
Q  72 atttctatttttgttcctttatccaatgccccaagggaaatggttagcatt 122  Q
    |||||||||||| | || ||||||||||||||||||| |||||||||||||    
T  39401566 atttctatttttatccccttatccaatgccccaagggcaatggttagcatt 39401516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 123
Target Start/End: Original strand, 16361644 - 16361695
Alignment:
Q  72 atttctatttttgttcctttatccaatgccccaagggaaatggttagcattt 123  Q
    |||||||||||| |||| ||||||||||| ||||||| ||| ||||||||||    
T  16361644 atttctatttttattcccttatccaatgctccaagggcaattgttagcattt 16361695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 123
Target Start/End: Complemental strand, 39085823 - 39085772
Alignment:
Q  72 atttctatttttgttcctttatccaatgccccaagggaaatggttagcattt 123  Q
    |||||||||||| | ||||||||||||| |||||| | ||||||||||||||    
T  39085823 atttctatttttatccctttatccaatgtcccaagagcaatggttagcattt 39085772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 17056089 - 17056039
Alignment:
Q  72 atttctatttttgttcctttatccaatgccccaagggaaatggttagcatt 122  Q
    |||||| ||||| | |||||||||||||||| ||||| |||||||||||||    
T  17056089 atttctttttttatccctttatccaatgccctaagggcaatggttagcatt 17056039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 17068536 - 17068486
Alignment:
Q  72 atttctatttttgttcctttatccaatgccccaagggaaatggttagcatt 122  Q
    |||||| ||||| | |||||||||||||||| ||||| |||||||||||||    
T  17068536 atttctttttttatccctttatccaatgccctaagggcaatggttagcatt 17068486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 17074519 - 17074469
Alignment:
Q  72 atttctatttttgttcctttatccaatgccccaagggaaatggttagcatt 122  Q
    |||||||||||| | |||||||| ||||||| ||||| |||||||||||||    
T  17074519 atttctatttttatccctttatctaatgccctaagggcaatggttagcatt 17074469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 122
Target Start/End: Complemental strand, 23685689 - 23685644
Alignment:
Q  77 tatttttgttcctttatccaatgccccaagggaaatggttagcatt 122  Q
    ||||||| | |||||||||||||||||||||| |||||||| ||||    
T  23685689 tatttttatccctttatccaatgccccaagggcaatggttaacatt 23685644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 122
Target Start/End: Original strand, 862641 - 862717
Alignment:
Q  46 cacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgccccaagggaaatggttagcatt 122  Q
    ||||||||  |||||||||| || | |||||||||||| | || |||| |||||||| ||||| ||| |||||||||    
T  862641 cacttttcaccattttccaatactatatttctatttttatcccattattcaatgccctaagggcaattgttagcatt 862717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 7 - 126
Target Start/End: Complemental strand, 6614975 - 6614856
Alignment:
Q  7 gaaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgccccaag 106  Q
    ||||||| ||||||||||||||||||||||||  ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||      
T  6614975 gaaacaataatttataaactttttacaagttgatttgaccactttttatcattttccaacacaaaatttctatttttgttcctttatccaatgccccata 6614876  T
Q  107 ggaaatggttagcatttccc 126  Q
    |  ||||| |||||||||||    
T  6614875 gacaatggatagcatttccc 6614856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 22616875 - 22617000
Alignment:
Q  1 acattggaaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgc 100  Q
    ||||||||||||||||||||||||||||||| ||||||  ||||| ||||||  ||||||||||||||  ||||||||||||||||  ||||||||||||    
T  22616875 acattggaaacaacaatttataaactttttataagttgatttgactactttttatcattttccaacac--aatttctatttttgttattttatccaatgc 22616972  T
Q  101 cccaagggaaatggttagcatttccctt 128  Q
    |||||||  |||| ||||||||||||||    
T  22616973 cccaaggacaatgattagcatttccctt 22617000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 31765801 - 31765904
Alignment:
Q  1 acattggaaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgc 100  Q
    |||||| |||||| ||||  ||||||||||||||||||  ||||||| ||||  | | | ||||||||| ||||||||||||| |||| ||||||||| |    
T  31765801 acattgaaaacaataattcgtaaactttttacaagttgatttgaccattttttattactctccaacacagaatttctatttttattcccttatccaatac 31765900  T
Q  101 ccca 104  Q
    ||||    
T  31765901 ccca 31765904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 122
Target Start/End: Complemental strand, 29692398 - 29692322
Alignment:
Q  46 cacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgccccaagggaaatggttagcatt 122  Q
    ||||||||  |||||| ||| || | |||||||||||| | | |||||||||||||||||||| |||| ||||||||    
T  29692398 cacttttcaccatttttcaatactatatttctatttttatccatttatccaatgccccaagggcaatgattagcatt 29692322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 26572113 - 26572063
Alignment:
Q  72 atttctatttttgttcctttatccaatgccccaagggaaatggttagcatt 122  Q
    |||||||||||| | || ||||||||||||||||||  |||||||||||||    
T  26572113 atttctatttttatccccttatccaatgccccaaggacaatggttagcatt 26572063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 122
Target Start/End: Original strand, 10855484 - 10855560
Alignment:
Q  46 cacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgccccaagggaaatggttagcatt 122  Q
    |||||||| ||||||| ||| |  | |||||||||||| | || ||||| ||||||||||||  |||||||||||||    
T  10855484 cacttttcatcatttttcaatattatatttctatttttatccccttatcaaatgccccaaggacaatggttagcatt 10855560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 33338341 - 33338215
Alignment:
Q  1 acattggaaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgc 100  Q
    ||||||||||||||||||||||||||||||| |||||| |||||| ||||||  ||||||||||| ||||||| ||||||||| ||||||||||||||||    
T  33338341 acattggaaacaacaatttataaactttttataagttgacttgactactttttatcattttccaa-acaaaatatctatttttattcctttatccaatgc 33338243  T
Q  101 cccaagggaaatggttagcatttccctt 128  Q
      |||||| ||| |||||||||||||||    
T  33338242 atcaagggcaatagttagcatttccctt 33338215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 5 - 128
Target Start/End: Complemental strand, 11680305 - 11680185
Alignment:
Q  5 tggaaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgcccca 104  Q
    |||||||||||||||    ||||||||||||||| ||| || |  |||  ||||||||||||||||||||||||||||||||||||||| |||  |||||    
T  11680305 tggaaacaacaatttg---actttttacaagttgacttaactatcttttatcattttccaacacaaaatttctatttttgttcctttattcaaaacccca 11680209  T
Q  105 agggaaatggttagcatttccctt 128  Q
    |||| |||||||||||||||||||    
T  11680208 agggcaatggttagcatttccctt 11680185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 126
Target Start/End: Original strand, 24397490 - 24397611
Alignment:
Q  3 attggaaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgccc 102  Q
    |||| |||||| |||||||||||||||||||||||| |  ||| ||||||  ||||||| ||||||||||||| || |||||||||||||| ||||||||    
T  24397490 attgaaaacaataatttataaactttttacaagttgacgcgactactttttatcatttttcaacacaaaattt-ta-ttttgttcctttattcaatgccc 24397587  T
Q  103 caagggaaatggttagcatttccc 126  Q
    |||||| |||| ||||||||||||    
T  24397588 caagggcaatgattagcatttccc 24397611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 128
Target Start/End: Original strand, 41530402 - 41530520
Alignment:
Q  10 acaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgccccaaggga 109  Q
    |||||||||||||||||||||| |||||| |||||||  ||||  ||||||| ||||||||||||||||||||  |||||||||||||||||  || ||     
T  41530402 acaacaatttataaactttttataagttgacttgaccgttttttatcattttgcaacacaaaatttctattttcattcctttatccaatgccttaaaggc 41530501  T
Q  110 aatggttagcatttccctt 128  Q
    |||||||||  ||||||||    
T  41530502 aatggttagtctttccctt 41530520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 3 - 98
Target Start/End: Complemental strand, 28273468 - 28273373
Alignment:
Q  3 attggaaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaat 98  Q
    ||||||||||||||||||||||||| ||| ||||||  || |||||||||  |||||||| |||||||| ||||||||||||||||||||| ||||    
T  28273468 attggaaacaacaatttataaacttgttataagttgatttaaccactttttatcattttctaacacaaagtttctatttttgttcctttattcaat 28273373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 35 - 128
Target Start/End: Complemental strand, 19804581 - 19804488
Alignment:
Q  35 gttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgccccaagggaaatggttagcatttccctt 128  Q
    |||| |||||||| ||||  ||| ||| ||||||||||||||||||||||||||||||| ||||||| |||||| | |  ||||||||||||||    
T  19804581 gttgacttgaccattttttatcacttttcaacacaaaatttctatttttgttcctttattcaatgccacaagggcactatttagcatttccctt 19804488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 5108506 - 5108410
Alignment:
Q  1 acattggaaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaat 98  Q
    |||||||||||||||||||||||| ||||||||| ||  |||||||||||||  | ||||| ||||| ||||  | || |||||||||||||||||||    
T  5108506 acattggaaacaacaatttataaagtttttacaaattaacttgaccactttttattatttttcaacaaaaaaaat-tacttttgttcctttatccaat 5108410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 125
Target Start/End: Complemental strand, 8213110 - 8212993
Alignment:
Q  7 gaaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgccccaag 106  Q
    ||||||| ||||||||||||||| ||||||||  ||||  | ||||  ||||||| ||||| | ||||| ||||||||||| |||||  ||||||| |||    
T  8213110 gaaacaataatttataaactttt-acaagttgatttgattattttttatcatttttcaacatagaatttttatttttgttcttttatgtaatgcccgaag 8213012  T
Q  107 ggaaatggttagcatttcc 125  Q
    || |||||||| |||||||    
T  8213011 ggcaatggttaacatttcc 8212993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 122
Target Start/End: Original strand, 15915884 - 15915960
Alignment:
Q  46 cacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgccccaagggaaatggttagcatt 122  Q
    ||||||||  ||||||||||  | | |||||||||||| |||| ||||||||||||||||| | |||||||||||||    
T  15915884 cacttttcaccattttccaatgctatatttctatttttattcccttatccaatgccccaagtgcaatggttagcatt 15915960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 122
Target Start/End: Complemental strand, 35653312 - 35653236
Alignment:
Q  46 cacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgccccaagggaaatggttagcatt 122  Q
    ||||||||  ||||||||||  | | |||||||||||| | || ||||||||||| ||||||| |||||||||||||    
T  35653312 cacttttcaccattttccaatgctatatttctatttttatccccttatccaatgcaccaagggcaatggttagcatt 35653236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 118
Target Start/End: Complemental strand, 338795 - 338749
Alignment:
Q  72 atttctatttttgttcctttatccaatgccccaagggaaatggttag 118  Q
    |||| ||||||| | |||||||||||||||||||||| |||||||||    
T  338795 atttttatttttatccctttatccaatgccccaagggcaatggttag 338749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 122
Target Start/End: Original strand, 39567958 - 39568031
Alignment:
Q  49 ttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgccccaagggaaatggttagcatt 122  Q
    ||||| |||||||||||  | | |||| ||||||| | || ||||||||||||||||||| |||||||| ||||    
T  39567958 ttttcatcattttccaatgctatatttatatttttatcccattatccaatgccccaagggcaatggttatcatt 39568031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 122
Target Start/End: Complemental strand, 4962573 - 4962498
Alignment:
Q  46 cacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgccccaagggaaatggttagcatt 122  Q
    |||||||| |||||||||||    | |||||||||||| |||| |||||||||| |||||||| ||||| |||||||    
T  4962573 cacttttcatcattttccaatgttatatttctatttttattcc-ttatccaatgtcccaagggcaatgggtagcatt 4962498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 36055084 - 36054980
Alignment:
Q  1 acattggaaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgc 100  Q
    ||||| ||||||||||||| | ||||||||||||||||  ||||||||||||  ||| ||||||||||||||||| ||||||||||||||||||||||||    
T  36055084 acattagaaacaacaatttgttaactttttacaagttgatttgaccactttttatcactttccaacacaaaatttttatttttgttcctttatccaatgc 36054985  T
Q  101 cccaa 105  Q
    |||||    
T  36054984 cccaa 36054980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 10636069 - 10635953
Alignment:
Q  1 acattggaaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgc 100  Q
    ||||||||||||| |||| |||||||||||| |||||  |||| | ||||||  ||||||| ||||||||||||||||||||||||| ||||||||||||    
T  10636069 acattggaaacaataattaataaactttttataagttaacttggctactttttatcatttttcaacacaaaatttctatttttgttcatttatccaatgc 10635970  T
Q  101 cccaagggaaatggtta 117  Q
    |||||||  ||||||||    
T  10635969 cccaaggacaatggtta 10635953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 108
Target Start/End: Original strand, 40451920 - 40452024
Alignment:
Q  4 ttggaaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgcccc 103  Q
    ||||||||||||||||||||| |||||||||||||  ||||  ||||||  ||| |||||||||||||||||| |||||||||||||||||||||||||     
T  40451920 ttggaaacaacaatttataaattttttacaagttgatttgattactttttatcactttccaacacaaaatttccatttttgttcctttatccaatgccca 40452019  T
Q  104 aaggg 108  Q
    |||||    
T  40452020 aaggg 40452024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 7 - 102
Target Start/End: Original strand, 24286509 - 24286604
Alignment:
Q  7 gaaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgccc 102  Q
    ||||||| ||||| ||||| |||||||||||| |||||||||||||  ||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  24286509 gaaacaataatttctaaacattttacaagttgacttgaccactttttatcactttccaacacaaaatttctatttttgttcctctatccaatgccc 24286604  T

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Target: chr8; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 44159348 - 44159470
Alignment:
Q  1 acattggaaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgc 100  Q
    ||||||| || ||||||||||||| ||||||||| ||   ||||| | ||||  ||||||||||||||||||||| |||||||||| ||||||||||||     
T  44159348 acattgggaataacaatttataaattttttacaaattactttgactaatttttatcattttccaacacaaaatttttatttttgttactttatccaatgt 44159447  T
Q  101 cccaagggaaatggttagcattt 123  Q
    || ||||| ||||||||||||||    
T  44159448 cctaagggcaatggttagcattt 44159470  T

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Target: chr8; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 31452079 - 31452171
Alignment:
Q  1 acattggaaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatc 94  Q
    ||||| ||||||||||||| |||| ||||| |||||||  ||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||    
T  31452079 acattagaaacaacaatttgtaaatttttt-caagttgatttgaccacttttcatcattttccaacacataatttctatttttgttcttttatc 31452171  T

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Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 122
Target Start/End: Complemental strand, 19389356 - 19389291
Alignment:
Q  57 attttccaacacaaaatttctatttttgttcctttatccaatgccccaagggaaatggttagcatt 122  Q
    ||||||||| || | |||||||||||| | || ||||||||||||||||||| |||||||||||||    
T  19389356 attttccaatactatatttctatttttatccccttatccaatgccccaagggcaatggttagcatt 19389291  T

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Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 100
Target Start/End: Original strand, 28280431 - 28280523
Alignment:
Q  8 aaacaacaatttataaactttttacaagttggcttgaccacttttcttcattttccaacacaaaatttctatttttgttcctttatccaatgc 100  Q
    ||||||| ||||  ||| ||| || |||||| |||||||||||||  |||||||||||||||| |||| ||||||| |||  |||||||||||    
T  28280431 aaacaacgattttaaaattttatataagttgacttgaccactttttatcattttccaacacaatatttatatttttattctcttatccaatgc 28280523  T

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