View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17055_low_26 (Length: 237)
Name: NF17055_low_26
Description: NF17055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17055_low_26 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 21 - 221
Target Start/End: Original strand, 14536519 - 14536723
Alignment:
| Q |
21 |
ggccgaactacgtgaacaaaaatggtgtctcataatcttgcaattttcggtttctttattcttctattactagtagctgttatatnnnnnnnn----caa |
116 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
14536519 |
ggccgaactacgtgaacaaaaattgtgtctcataatcttgcaattttcggtttctttattcttctattacttgtagctgttatataaaaaaaaaaaacaa |
14536618 |
T |
|
| Q |
117 |
tctaaatcaagatagaagcacaagaaaatgtacctgtgacagagtagttatactcaggagaagcaaaaagaacactatcagcttgaagaatcttgtggcg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14536619 |
tctaaatcaagatagaagcacaagaaaatgtacctgtgacagagtagttatactcaggagaagcaaaaagaacactatcagcttgaagaatcttgtggcg |
14536718 |
T |
|
| Q |
217 |
aaaag |
221 |
Q |
| |
|
||||| |
|
|
| T |
14536719 |
aaaag |
14536723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 147 - 219
Target Start/End: Original strand, 5325469 - 5325541
Alignment:
| Q |
147 |
tacctgtgacagagtagttatactcaggagaagcaaaaagaacactatcagcttgaagaatcttgtggcgaaa |
219 |
Q |
| |
|
|||||| |||||| || |||||||||||||||||||| |||||||||||||||| ||||||||| || ||||| |
|
|
| T |
5325469 |
tacctgagacagaataattatactcaggagaagcaaagagaacactatcagcttcaagaatcttatgacgaaa |
5325541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 221
Target Start/End: Complemental strand, 5351651 - 5351577
Alignment:
| Q |
147 |
tacctgtgacagagtagttatactcaggagaagcaaaaagaacactatcagcttgaagaatcttgtggcgaaaag |
221 |
Q |
| |
|
|||||| |||||| || ||||| |||||||||||||| |||||||||||||| ||||||||| || ||||||| |
|
|
| T |
5351651 |
tacctgagacagaataattatattcaggagaagcaaagagaacactatcagcagcaagaatcttttgacgaaaag |
5351577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University