View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17055_low_28 (Length: 227)
Name: NF17055_low_28
Description: NF17055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17055_low_28 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 5 - 227
Target Start/End: Original strand, 23170941 - 23171156
Alignment:
| Q |
5 |
gagtcgttcgagagaatccgagttcaatttctatatgaaataattcctagatatgttatccttacgtcatggcttaacttctgattatcaagacctcttt |
104 |
Q |
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| T |
23170941 |
gagtcgttcgagagaattcgaattcaatttctatatgaaacaattcctaaacatgttattcttacgccatggcttaacttctgattatcaagacctcttt |
23171040 |
T |
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| Q |
105 |
catctagaaagtgtaaggttaacgccaaaaaggataataatagaataccacagtggacagtggaaaaaggtaattatcttaaaacaagtggtttaagttg |
204 |
Q |
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| T |
23171041 |
catttagaaagtgtaaggataacgccaaaaaggataaaaatagaatatc-------acagtgaaaaaaggtaattatcttaaaacaagtggtttaagttg |
23171133 |
T |
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| Q |
205 |
ttaatagttcttctcactcgact |
227 |
Q |
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||||||||| |||| ||| |||| |
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| T |
23171134 |
ttaatagttattctaacttgact |
23171156 |
T |
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