View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17055_low_3 (Length: 487)
Name: NF17055_low_3
Description: NF17055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17055_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 14 - 332
Target Start/End: Complemental strand, 48297107 - 48296789
Alignment:
| Q |
14 |
aatactcgaagaacaggtttggttaacaagcacaagtccaaacaaagcaagacatgccatctctgaggttttatgatggtgaaatgcaagtaacaattga |
113 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
48297107 |
aatactcgaagaacgggtttggttaacaagcacaagtccaaacaaagcaagacatgccatctctgaggttatatgatggtgaaatgcaagtaacaattga |
48297008 |
T |
|
| Q |
114 |
aaacagaacttgaatattgtaattatatattcttgtagtaacactgacaaactttcttgtttgactcaaaggtagtaacaactaattgacttaacaacaa |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
48297007 |
aaacagaacttgaatattgtaattatatattcttgtagtaacactaacaaactttcttgtttgactcaaaggtagtaacaactaattgactcaacaacaa |
48296908 |
T |
|
| Q |
214 |
cacatcaacaatactaatgtttgtacatggacagtaggacaaggcatgtgtttgaagtatgcttagtaggattgggtaagaagggaacatgcaaaagtaa |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
48296907 |
cacatcaacaatactaatgtttgtacatggacagtaggacaaggcatgtgtttgaagtatgcttagtagaattgggtaagaagggaacatgcaaaagtaa |
48296808 |
T |
|
| Q |
314 |
taaaatttacatggacttg |
332 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
48296807 |
taaaatttacatggacttg |
48296789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 330 - 468
Target Start/End: Complemental strand, 48296742 - 48296604
Alignment:
| Q |
330 |
ttgctaattttgtttactataatactcgatcaaaacatatggaagtaagagcctacaagttacaacactgatttacatataaatcacatagtttatttta |
429 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48296742 |
ttgctaattttgtttattataatactcgatcaaaacatatgtaagtaagagcctacaagttacaacactgatttacatataaatcacatagtttatttta |
48296643 |
T |
|
| Q |
430 |
tgaaaatatataaggataaataatgagaagtgagaataa |
468 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
48296642 |
tgaaaatagataaggataaataatgagaagtgaaaataa |
48296604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 38 - 114
Target Start/End: Original strand, 32260675 - 32260751
Alignment:
| Q |
38 |
aacaagcacaagtccaaacaaagcaagacatgccatctctgaggttttatgatggtgaaatgcaagtaacaattgaa |
114 |
Q |
| |
|
|||||||| |||||| ||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
32260675 |
aacaagcataagtcctaacaaagcaagacataccatctttgaggttatatgatggtgaaatgcaagtaacaattgaa |
32260751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University