View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17055_low_4 (Length: 431)
Name: NF17055_low_4
Description: NF17055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17055_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 17 - 280
Target Start/End: Original strand, 36589468 - 36589730
Alignment:
| Q |
17 |
ttgtaatttgtataaaaatgttaaagacaaatttaaattttatttttgtcagagatttaattgggtcacgagaaagttttaaaggacg-aaaatgagtca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||| |
|
|
| T |
36589468 |
ttgtaatttgtataaaaatgttaaagacaaatttaaattttatttttgtcagagatttaattgggtcacgagaaagttttaaaggatgaaaaatgaatca |
36589567 |
T |
|
| Q |
116 |
ttattctttattttaaatggtgattgtcatgagttaaggagtttttaattcatacaacaagaaacgaattgttgttta--nnnnnnncaaaggaaggaat |
213 |
Q |
| |
|
||| |||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
36589568 |
ttactctttattttaaatggtgattgtc--gagtt--ggagtttttaattcatgcaacaagaaaggaattgttgtttattttttttcaaaaggaaggaat |
36589663 |
T |
|
| Q |
214 |
tgaagttattataaacacgtttattttactttttgaagaaataaactcgtttacattattaatataa |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36589664 |
tgaagttattataaacacgtttattttactttttgaagaaataaactcgtttacattattaatataa |
36589730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 272 - 343
Target Start/End: Original strand, 36590026 - 36590097
Alignment:
| Q |
272 |
ttaatataaataaaggtaaagagattgtgtcttggttcaagccagagaagattttaagactcaaatagcatt |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
36590026 |
ttaatataaataaaggtaaagagattgtgtcttggttcaagccatagaagattttaagacttaaatagcatt |
36590097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University