View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17055_low_5 (Length: 402)
Name: NF17055_low_5
Description: NF17055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17055_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 13 - 392
Target Start/End: Complemental strand, 40568797 - 40568419
Alignment:
| Q |
13 |
agttatcacatgtcccatgttagtgtatgtctctacttgtggcttataatttgtaccgttaatatcactccttggatgtttcttgtccgtattttttgtg |
112 |
Q |
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| T |
40568797 |
agttatcacatgtcccatgttagtgtatgtctctacttgtggcttataatttgtaccgttaatatcactccttggatgtttcttgtccatattttttgtg |
40568698 |
T |
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| Q |
113 |
ccgtgttattattggtgccagcttgaaaataagtccccccttcaagcactttttctttatcagcctctatatcgaactgtaccatgaaaaatccatggcc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40568697 |
ccgtgttattattggtgccagcttgaaaataagtccccccttcaagcactttttctttatcagcctctatatcgaactgtaccatgaaaaatccatggcc |
40568598 |
T |
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| Q |
213 |
aatatctacaatctcaaaaccaccagttagtttccataacgccttgacatgctccctcgtcgtaacataaccaatgaatttacctagaagtattatgatg |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||| |
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| T |
40568597 |
aatatctacaatctcaaaaccaccagttagtttccataacgccttgacatgctcc--cgtcgtaacataaccaatgaatttacctagaaatatt---atg |
40568503 |
T |
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| Q |
313 |
atgatagcatcattgcaaggtttgcacaattctgatataaccttatcatca----aagtatgtgttccctcccctccccctatg |
392 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
40568502 |
atcatagcatcattgcaaggtttgcacaattctgatataaccttatcatcaaattaagtatgtgttccctcccctccccctatg |
40568419 |
T |
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