View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17055_low_9 (Length: 348)
Name: NF17055_low_9
Description: NF17055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17055_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 119; Significance: 9e-61; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 197 - 331
Target Start/End: Original strand, 36175970 - 36176104
Alignment:
| Q |
197 |
atttgaatttgaaataagggtgtgaatcgaagaggatcatagtagaagaagaagaacagcaacaattcatgggtacgatgatgctgagaggattaaggtg |
296 |
Q |
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| T |
36175970 |
atttgaatttgaaataagggtgtgaatctaagaggatcatagtagaagaagaacaacaacaacgattcatgggtacgatgatgctgagaggattaaggtg |
36176069 |
T |
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| Q |
297 |
tgaagtgatggttttgttgtctctgtttgagttca |
331 |
Q |
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| T |
36176070 |
tgaagtgatggttttgttgtctctgtttgagttca |
36176104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 20 - 167
Target Start/End: Original strand, 36175783 - 36175925
Alignment:
| Q |
20 |
cgttgaagttaaagaagattcttcttcatcttcggtggcaacaggtataggaagaagcaaagaagtgagcatgcaatgcaagctctgattgcggccgcgg |
119 |
Q |
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| T |
36175783 |
cgttgaagttaaagaagattcttcttcctcttcggtggcgacaggtataggaagaagcaaaaaagtgagc-----atgcaagctccgattgcggccgcga |
36175877 |
T |
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| Q |
120 |
acggagcatcatcggcgaacactaccttgcaggagctttgtctgtgat |
167 |
Q |
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| T |
36175878 |
acggagcatcatcggcgaacactgccttgcaggagttttgtctgtgat |
36175925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 20 - 205
Target Start/End: Original strand, 1708338 - 1708518
Alignment:
| Q |
20 |
cgttgaagttaaagaagattcttcttcatcttcggtggcaacaggtataggaagaagcaaagaagtgagcatgcaatgcaagctctgattgcggccgcgg |
119 |
Q |
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| T |
1708338 |
cgttgaagttaaagaagattcttcttcctcttcggtggcaacaggtaccggaagaatcaaagaagtgagcatgcaa-----gcaccgattgcggcggcga |
1708432 |
T |
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| Q |
120 |
acggagcatcatcggcgaacactaccttgcaggagctttgtctgtgatgatctctattgaatttgaagctgggtttgatttgaatt |
205 |
Q |
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| T |
1708433 |
acggagcatcatcgacgaacactgccttgcagtagctttgtctataatgatctttattgaatttgaagctgggtttgatttgaatt |
1708518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 198 - 279
Target Start/End: Original strand, 1708554 - 1708632
Alignment:
| Q |
198 |
tttgaatttgaaataagggtgtgaatcgaagaggatcatagtagaagaagaagaacagcaacaattcatgggtacgatgatg |
279 |
Q |
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| T |
1708554 |
tttgaatttgaaacatgggcgtgaatcgaagaggatcatagttgaagaagaacaagag---caattcatgggtacgatgatg |
1708632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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