View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17056_high_10 (Length: 273)
Name: NF17056_high_10
Description: NF17056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17056_high_10 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 33511753 - 33512019
Alignment:
| Q |
1 |
taaagaaccgagtgattgagttcaaatggttattaaattttatttaaaaatggatcgtttagataatataagttaaaattctaactaaaacaaccattga |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| |||| ||| |||||| ||||||| |||||||||||||| |||||||||| |||||| |
|
|
| T |
33511753 |
taaagaaccgagtgaatgagttcaaatggttattaaattttatctaaagatgaatcgttcagataatctaagttaaaattctcactaaaacaatcattga |
33511852 |
T |
|
| Q |
101 |
tcagactttatatacctttcgatcgaacatctgatcaataggactcgtttctttaaaaaccggagggttaaggtcaagatataaaaagtccaaaacaaaa |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33511853 |
tcagactttatatacctttcgattgaacatttgatcagtaggactcgtttctttaaaaactggagggttaaggtcaagatataaaaattccaaaacaaaa |
33511952 |
T |
|
| Q |
201 |
ttaattataaaaattgttaagctttgaagtttcaactcatcaattagaatttatgtacctatgctac |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
33511953 |
ttaattataaaaattgttaagctttgaagtttcaactcatcaattagaatttatgtacttatgctac |
33512019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University