View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17056_high_3 (Length: 500)
Name: NF17056_high_3
Description: NF17056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17056_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 418; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 19 - 483
Target Start/End: Original strand, 50428021 - 50428490
Alignment:
| Q |
19 |
attcaacactccttggcagtgctcagggcgtgtacgtaaattcgcagcttgatagcaaagcagtgtacatggttttctcagtgatattcacttctggtaa |
118 |
Q |
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| T |
50428021 |
attcaacactccttggcagtgctcagggcgtgtacgtaaattcgcagcttgatagcaaagcagtgtacatggttttctcagtgatattcacttctggtaa |
50428120 |
T |
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| Q |
119 |
gtacataggaagcacattggagatgcaaggatatagtttatatacaataaaggaaagagaatttgggattgtttctggcacaggttattttcggtttgtt |
218 |
Q |
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| T |
50428121 |
gtacataggaagcacattggagatgcaaggatatagtttatatacaacaaaggaaagagaatttgggattgtttctggcacaggttattttcggtttgtt |
50428220 |
T |
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| Q |
219 |
aaagggtatgcggttatggaaacacagtccgtggatttagctacactgcgaaccacttttaaactcaatgtaacaatcaaacattattaggaaaacttca |
318 |
Q |
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| T |
50428221 |
aaagggtatgcggttatggaaacacagtccgtggatttagctacactgcgaaccacttttaaactcaatgtaacaatcaaacattattaggaaaacttca |
50428320 |
T |
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| Q |
319 |
tgagtggctcttctacaactgtattatagtgttgcaattgtatttcaattcaaatttgcagatgttatgaaacttttataatgaa---tgagttatatga |
415 |
Q |
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| T |
50428321 |
tgagtggctcttctacaactggattatagtgttgcagttgtatttcaattcaaatttgcagatgttatgaaacttttataatgaatattgagt--tatga |
50428418 |
T |
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| Q |
416 |
tcgttagattcactac----ttatgtagttaattaattagttactcctgatttgaagaaatttagaaatatc |
483 |
Q |
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| T |
50428419 |
tcgttagattcactacttaattatgtagttaattaattagttactcctgatttgaagaaatttagaaatatc |
50428490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 50 - 292
Target Start/End: Original strand, 50422879 - 50423121
Alignment:
| Q |
50 |
gtacgtaaattcgcagcttgatagcaaagcagtgtacatggttttctcagtgatattcacttctggtaagtacataggaagcacattggagatgcaagga |
149 |
Q |
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| T |
50422879 |
gtacataaattcgcagcttgatggtaaagctttgtacatggttttctcggtgatattcacagctggtgagtatagaggaagcaccttggagattcaagga |
50422978 |
T |
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| Q |
150 |
tatagtttatatacaataaaggaaagagaatttgggattgtttctggcacaggttattttcggtttgttaaagggtatgcggttatggaaacacagtccg |
249 |
Q |
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| T |
50422979 |
tctgatatattcacaacgaaggaacgagaatttggaattgtttcaggcacaggttactttcggtttgttaaaggctatgggattatggaaacagagttca |
50423078 |
T |
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| Q |
250 |
tggatttagctacactgcgaaccacttttaaactcaatgtaac |
292 |
Q |
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| T |
50423079 |
tggatttagttaatcttagagccactcttaaacttaatgtaac |
50423121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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