View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17056_high_8 (Length: 331)

Name: NF17056_high_8
Description: NF17056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17056_high_8
NF17056_high_8
[»] chr7 (16 HSPs)
chr7 (12-315)||(27552310-27552614)
chr7 (223-285)||(3265485-3265547)
chr7 (211-285)||(21164748-21164822)
chr7 (223-276)||(30073609-30073662)
chr7 (222-283)||(39280819-39280880)
chr7 (211-256)||(42227795-42227840)
chr7 (211-267)||(27833391-27833447)
chr7 (213-256)||(44868147-44868190)
chr7 (211-258)||(46371005-46371052)
chr7 (211-277)||(3584209-3584275)
chr7 (211-277)||(36341055-36341121)
chr7 (227-283)||(2391006-2391062)
chr7 (223-267)||(8237634-8237678)
chr7 (213-285)||(24225973-24226045)
chr7 (212-248)||(35523069-35523105)
chr7 (224-284)||(37495921-37495981)
[»] chr4 (29 HSPs)
chr4 (211-285)||(42344608-42344682)
chr4 (212-267)||(18004480-18004535)
chr4 (220-283)||(15022992-15023055)
chr4 (211-282)||(19908692-19908763)
chr4 (211-282)||(30135140-30135211)
chr4 (227-285)||(874456-874514)
chr4 (211-285)||(7230277-7230351)
chr4 (211-285)||(15988415-15988488)
chr4 (222-256)||(23160066-23160100)
chr4 (214-256)||(37735815-37735857)
chr4 (211-277)||(37930837-37930903)
chr4 (211-285)||(42845022-42845096)
chr4 (223-285)||(46411819-46411881)
chr4 (211-256)||(836225-836270)
chr4 (223-284)||(2587703-2587763)
chr4 (211-256)||(9783925-9783970)
chr4 (211-256)||(16432947-16432992)
chr4 (212-285)||(22164260-22164333)
chr4 (211-284)||(29908054-29908127)
chr4 (223-284)||(40070970-40071031)
chr4 (212-285)||(50380827-50380900)
chr4 (235-283)||(2228410-2228458)
chr4 (224-284)||(8734848-8734908)
chr4 (214-258)||(14202472-14202516)
chr4 (212-256)||(47015559-47015603)
chr4 (223-267)||(48223582-48223626)
chr4 (228-276)||(48824923-48824971)
chr4 (236-284)||(52699371-52699419)
chr4 (223-267)||(56551594-56551638)
[»] chr2 (25 HSPs)
chr2 (212-267)||(20644019-20644074)
chr2 (211-285)||(31837926-31838000)
chr2 (212-285)||(41555291-41555364)
chr2 (211-256)||(43305899-43305944)
chr2 (211-285)||(14735883-14735957)
chr2 (235-281)||(40797365-40797411)
chr2 (211-285)||(41939098-41939172)
chr2 (212-285)||(30089046-30089119)
chr2 (212-285)||(30125650-30125723)
chr2 (214-258)||(13100257-13100301)
chr2 (224-283)||(17842715-17842774)
chr2 (211-282)||(23250310-23250381)
chr2 (211-282)||(30045453-30045524)
chr2 (211-282)||(30050616-30050687)
chr2 (211-282)||(30141660-30141731)
chr2 (211-285)||(31815877-31815951)
chr2 (211-284)||(21497665-21497738)
chr2 (236-285)||(34364510-34364559)
chr2 (223-284)||(41165433-41165494)
chr2 (235-279)||(3020675-3020719)
chr2 (233-277)||(7772472-7772516)
chr2 (223-267)||(13000700-13000744)
chr2 (236-284)||(22527187-22527235)
chr2 (214-258)||(29599963-29600007)
chr2 (214-285)||(33890169-33890241)
[»] chr6 (22 HSPs)
chr6 (223-285)||(24438284-24438346)
chr6 (232-285)||(2213294-2213347)
chr6 (211-284)||(8629686-8629759)
chr6 (211-256)||(17113450-17113495)
chr6 (211-267)||(24248180-24248236)
chr6 (236-283)||(11713665-11713712)
chr6 (211-282)||(12459731-12459802)
chr6 (242-285)||(20013166-20013209)
chr6 (211-285)||(8138448-8138522)
chr6 (223-285)||(28898853-28898915)
chr6 (223-277)||(31971534-31971588)
chr6 (211-285)||(34701144-34701218)
chr6 (227-284)||(404161-404218)
chr6 (222-267)||(2105920-2105965)
chr6 (211-284)||(4826288-4826361)
chr6 (211-256)||(15187089-15187134)
chr6 (211-256)||(15473472-15473517)
chr6 (224-285)||(16125029-16125090)
chr6 (212-285)||(16390426-16390499)
chr6 (211-252)||(27140204-27140245)
chr6 (223-283)||(3808120-3808180)
chr6 (211-267)||(29457196-29457252)
[»] chr8 (20 HSPs)
chr8 (211-284)||(30071506-30071579)
chr8 (235-285)||(2181125-2181175)
chr8 (223-285)||(9241012-9241074)
chr8 (215-284)||(3456816-3456884)
chr8 (211-267)||(5179808-5179864)
chr8 (227-282)||(41430458-41430513)
chr8 (223-286)||(41603057-41603120)
chr8 (236-282)||(3681629-3681675)
chr8 (224-282)||(4263815-4263873)
chr8 (227-285)||(10732781-10732839)
chr8 (211-285)||(13357431-13357505)
chr8 (243-285)||(29924939-29924981)
chr8 (211-285)||(33743572-33743646)
chr8 (211-256)||(44632175-44632220)
chr8 (212-256)||(574410-574454)
chr8 (233-285)||(24044675-24044727)
chr8 (211-283)||(34420852-34420924)
chr8 (211-259)||(39138988-39139036)
chr8 (223-267)||(42208471-42208515)
chr8 (227-283)||(44019548-44019604)
[»] chr5 (14 HSPs)
chr5 (212-285)||(5107236-5107309)
chr5 (214-276)||(14681247-14681309)
chr5 (211-284)||(36170053-36170126)
chr5 (211-256)||(37054259-37054304)
chr5 (211-256)||(42817102-42817147)
chr5 (223-283)||(16579376-16579436)
chr5 (211-282)||(1538798-1538869)
chr5 (242-284)||(14124299-14124341)
chr5 (211-285)||(23422858-23422931)
chr5 (242-284)||(29667892-29667934)
chr5 (223-276)||(4763188-4763241)
chr5 (223-284)||(5614763-5614824)
chr5 (211-267)||(18391615-18391671)
chr5 (227-267)||(22745904-22745944)
[»] chr3 (27 HSPs)
chr3 (211-285)||(7464481-7464555)
chr3 (223-285)||(17035915-17035977)
chr3 (227-285)||(53633623-53633681)
chr3 (228-285)||(2105705-2105762)
chr3 (223-284)||(47377351-47377412)
chr3 (215-283)||(21245792-21245860)
chr3 (211-259)||(31214657-31214705)
chr3 (214-285)||(4332660-4332731)
chr3 (219-282)||(43630416-43630479)
chr3 (228-282)||(24088308-24088362)
chr3 (227-281)||(38869524-38869578)
chr3 (223-285)||(53706821-53706882)
chr3 (211-256)||(9027378-9027423)
chr3 (223-284)||(21160050-21160111)
chr3 (211-287)||(25874125-25874202)
chr3 (236-285)||(26973358-26973407)
chr3 (236-285)||(27432231-27432280)
chr3 (211-284)||(32928578-32928650)
chr3 (227-276)||(39869813-39869862)
chr3 (238-287)||(41442943-41442992)
chr3 (224-285)||(48315027-48315088)
chr3 (223-283)||(2563928-2563988)
chr3 (211-267)||(28430555-28430611)
chr3 (223-259)||(31463507-31463543)
chr3 (227-267)||(51614224-51614264)
chr3 (223-282)||(52454979-52455039)
chr3 (211-267)||(53438685-53438741)
[»] chr1 (26 HSPs)
chr1 (211-285)||(3777715-3777789)
chr1 (211-285)||(31338016-31338090)
chr1 (218-267)||(12591804-12591853)
chr1 (211-284)||(29042535-29042608)
chr1 (223-267)||(49431995-49432039)
chr1 (223-282)||(33153882-33153941)
chr1 (211-285)||(8269358-8269432)
chr1 (212-282)||(12522110-12522180)
chr1 (211-285)||(30678803-30678877)
chr1 (227-285)||(30795698-30795756)
chr1 (235-281)||(31092662-31092708)
chr1 (223-285)||(37944132-37944194)
chr1 (227-276)||(17221526-17221575)
chr1 (244-285)||(18521244-18521285)
chr1 (211-264)||(27127242-27127295)
chr1 (238-267)||(29059422-29059451)
chr1 (250-283)||(43397770-43397803)
chr1 (211-256)||(50372351-50372396)
chr1 (211-267)||(13778576-13778632)
chr1 (228-276)||(19316183-19316231)
chr1 (243-283)||(22946572-22946612)
chr1 (211-283)||(32950751-32950823)
chr1 (211-263)||(34595891-34595943)
chr1 (227-283)||(37050928-37050984)
chr1 (214-258)||(41769808-41769852)
chr1 (223-287)||(46334770-46334834)
[»] scaffold0072 (1 HSPs)
scaffold0072 (224-269)||(15954-15999)
[»] scaffold0182 (1 HSPs)
scaffold0182 (211-281)||(17761-17831)
[»] scaffold0083 (1 HSPs)
scaffold0083 (227-283)||(45942-45998)
[»] scaffold0027 (1 HSPs)
scaffold0027 (223-283)||(61572-61632)


Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 12 - 315
Target Start/End: Original strand, 27552310 - 27552614
Alignment:
Q  12 tgaacttgaatttttaaagtgcggttttaaatttaagttttgttgatggaaaaaatggttgaaaaaagacacaatataaagtaaggttttgagtttgagc 111  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  27552310 tgaactcgaatttttaaagtacggttttaaatttaagttttgttgatggaaaaaatggttgaaaatagacacaatataaagtaaggttttgagtttgagc 27552409  T
Q  112 tttgttaatggaagaaatatagttgaaaagaaaaaatcatgatcaatcaaatttttcaatgaaaataagacatgtgtaaagtcaatga--annnnnnnnn 209  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||  |             
T  27552410 tttgttaattgaagaaatacagttgaaaagaaaaaatcatgatcaatcaaatttttcaatgaaaattagtcatgtgtaaagtcaatgaatatttgttttt 27552509  T
Q  210 ngtggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacgagtaaattctatgaatattttacact 309  Q
     |||||||||||| |||||||||| | ||||| |||||||||| ||| |||||| |||||||||||| |||||||||| | | |||||||||||||||||    
T  27552510 tgtggtggtcgaaatttgaacctcag-ccttacatatattatggattgttcttatcaattaagttaaattcacgagtacaatttatgaatattttacact 27552608  T
Q  310 aataac 315  Q
    ||||||    
T  27552609 aataac 27552614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 285
Target Start/End: Original strand, 3265485 - 3265547
Alignment:
Q  223 gtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacgag 285  Q
    |||||||||||| ||||| ||||| ||||| ||||| | |||||||| |||||||||||||||    
T  3265485 gtttgaacctcgaaccttgtatattttatgtattatacctaccaattgagttaagttcacgag 3265547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 285
Target Start/End: Original strand, 21164748 - 21164822
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacgag 285  Q
    |||||||||  ||||| ||||||  ||||||||||||||||||||||| | |||||| | ||||||| |||||||    
T  21164748 gtggtggtcagagtttaaacctcaaaccttatatatattatgcattatccataccaactgagttaagctcacgag 21164822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 223 - 276
Target Start/End: Original strand, 30073609 - 30073662
Alignment:
Q  223 gtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaa 276  Q
    ||||||||||| |||||| ||||||||| ||||||| |||||||||| ||||||    
T  30073609 gtttgaacctcagaccttgtatatattacgcattatccttaccaattgagttaa 30073662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 283
Target Start/End: Original strand, 39280819 - 39280880
Alignment:
Q  222 agtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacg 283  Q
    |||||||||| ||||||||  |||||||||||||| |||||||||| | || ||||||||||    
T  39280819 agtttgaaccccggaccttgcatatattatgcattgttcttaccaactgagctaagttcacg 39280880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 256
Target Start/End: Original strand, 42227795 - 42227840
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcatt 256  Q
    |||||||||| ||||||||||||| |||||| ||||||||||||||    
T  42227795 gtggtggtcggagtttgaacctcgaaccttacatatattatgcatt 42227840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 267
Target Start/End: Original strand, 27833391 - 27833447
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaa 267  Q
    ||||||||||  ||||||||| ||||||||| |||||||||||||| | ||||||||    
T  27833391 gtggtggtcggggtttgaaccccggaccttacatatattatgcattgtccttaccaa 27833447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 213 - 256
Target Start/End: Original strand, 44868147 - 44868190
Alignment:
Q  213 ggtggtcgaagtttgaacctcggaccttatatatattatgcatt 256  Q
    |||||||| | |||||||||||||||||| ||||||||||||||    
T  44868147 ggtggtcggaatttgaacctcggaccttacatatattatgcatt 44868190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 258
Target Start/End: Complemental strand, 46371052 - 46371005
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcattat 258  Q
    |||||||||| |||||||||| ||||||||  ||||||||||||||||    
T  46371052 gtggtggtcggagtttgaaccccggaccttggatatattatgcattat 46371005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 277
Target Start/End: Complemental strand, 3584275 - 3584209
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaag 277  Q
    ||||||||||  ||||||| |||| |||||  |||||||||||||| | |||||||| |||||||||    
T  3584275 gtggtggtcggggtttgaatctcgtaccttgcatatattatgcattgtccttaccaactaagttaag 3584209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 277
Target Start/End: Original strand, 36341055 - 36341121
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaag 277  Q
    ||||||||||| ||||||||  |||||||| ||||| ||||||||| ||| |||||| | |||||||    
T  36341055 gtggtggtcgaggtttgaactccggaccttgtatattttatgcattgttcataccaactgagttaag 36341121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 283
Target Start/End: Complemental strand, 2391062 - 2391006
Alignment:
Q  227 gaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacg 283  Q
    ||||| |||| ||| ||||||||||||||| |||||||||| | || ||||||||||    
T  2391062 gaaccccggatcttgtatatattatgcattgttcttaccaactgagctaagttcacg 2391006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 267
Target Start/End: Original strand, 8237634 - 8237678
Alignment:
Q  223 gtttgaacctcggaccttatatatattatgcattattcttaccaa 267  Q
    ||||||||||||||| || ||||||||||||||| | ||||||||    
T  8237634 gtttgaacctcggactttgtatatattatgcattgtccttaccaa 8237678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 285
Target Start/End: Original strand, 24225973 - 24226045
Alignment:
Q  213 ggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacgag 285  Q
    ||||||||| ||| ||||||||||||||| |||| ||||||||| | | ||| || | || ||||||||||||    
T  24225973 ggtggtcgaggttcgaacctcggaccttacatattttatgcattgtccatacgaactgagctaagttcacgag 24226045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 35523069 - 35523105
Alignment:
Q  212 tggtggtcgaagtttgaacctcggaccttatatatat 248  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  35523069 tggtgatcgaagtttgaacctcgaaccttatatatat 35523105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 37495921 - 37495981
Alignment:
Q  224 tttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacga 284  Q
    ||||||||| |||||||  ||||||||||||||||   || ||||||||||||| ||||||    
T  37495921 tttgaaccttggaccttgcatatattatgcattatcaatatcaattaagttaagctcacga 37495981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 211 - 285
Target Start/End: Original strand, 42344608 - 42344682
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacgag 285  Q
    ||||||||||| ||||||||||||||||||  ||||||||| |||| ||| |||||||| ||||||| |||||||    
T  42344608 gtggtggtcgatgtttgaacctcggaccttgcatatattatacattgttcctaccaattgagttaaggtcacgag 42344682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 267
Target Start/End: Complemental strand, 18004535 - 18004480
Alignment:
Q  212 tggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaa 267  Q
    ||||||||| ||||||||| ||||| |||| |||||||||||||||||||||||||    
T  18004535 tggtggtcggagtttgaacgtcggatcttacatatattatgcattattcttaccaa 18004480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 283
Target Start/End: Original strand, 15022992 - 15023055
Alignment:
Q  220 gaagtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacg 283  Q
    |||||| ||| |||||| ||||||||||||||| |||||||||| ||| | |||||||||||||    
T  15022992 gaagttcgaatctcggatcttatatatattatgtattattcttagcaactgagttaagttcacg 15023055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 282
Target Start/End: Complemental strand, 19908763 - 19908692
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcac 282  Q
    ||||||||||  ||| ||||||||||||||  |||||||||||||| | |||||||| | ||||||| ||||    
T  19908763 gtggtggtcggggttcgaacctcggaccttgcatatattatgcattgtccttaccaactgagttaagctcac 19908692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 282
Target Start/End: Complemental strand, 30135211 - 30135140
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcac 282  Q
    ||||||||||  |||||||||||||| || | |||||||||||||||| |||| ||| | ||||||| ||||    
T  30135211 gtggtggtcggggtttgaacctcggatctgacatatattatgcattatccttatcaactgagttaagctcac 30135140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 285
Target Start/End: Complemental strand, 874514 - 874456
Alignment:
Q  227 gaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacgag 285  Q
    ||||| || ||||||||||||||||||||| | | || ||| |||||||||||||||||    
T  874514 gaaccacgaaccttatatatattatgcattgtccatatcaactaagttaagttcacgag 874456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 285
Target Start/End: Complemental strand, 7230351 - 7230277
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacgag 285  Q
    ||||||| ||| ||||||||| ||||||||  |||||||||||||| | |||||||| | || |||| |||||||    
T  7230351 gtggtggccgaggtttgaaccccggaccttgcatatattatgcattgtccttaccaactgagctaagctcacgag 7230277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 285
Target Start/End: Complemental strand, 15988488 - 15988415
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacgag 285  Q
    ||||||||||| ||| ||||| |||||||| |||||| |||||||| | |||||||| | ||||||| |||||||    
T  15988488 gtggtggtcgaggttcgaaccccggaccttgtatatagtatgcattgtccttaccaact-agttaagctcacgag 15988415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 256
Target Start/End: Complemental strand, 23160100 - 23160066
Alignment:
Q  222 agtttgaacctcggaccttatatatattatgcatt 256  Q
    |||||||||||||||||||| ||||||||||||||    
T  23160100 agtttgaacctcggaccttacatatattatgcatt 23160066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 256
Target Start/End: Complemental strand, 37735857 - 37735815
Alignment:
Q  214 gtggtcgaagtttgaacctcggaccttatatatattatgcatt 256  Q
    |||||||| ||||||||||| ||||||| ||||||||||||||    
T  37735857 gtggtcgaggtttgaacctcagaccttacatatattatgcatt 37735815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 277
Target Start/End: Original strand, 37930837 - 37930903
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaag 277  Q
    ||||||||||  ||||||||||| ||||||  |||||||||||||| | | |||||||| |||||||    
T  37930837 gtggtggtcggggtttgaacctcagaccttgcatatattatgcattgtacctaccaattgagttaag 37930903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 285
Target Start/End: Complemental strand, 42845096 - 42845022
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacgag 285  Q
    |||||||||| ||||| |||| ||||||||  |||||||||||||| | ||| |||| | ||||||| |||||||    
T  42845096 gtggtggtcggagttttaaccccggaccttgcatatattatgcattgtcctttccaactgagttaagctcacgag 42845022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 285
Target Start/End: Original strand, 46411819 - 46411881
Alignment:
Q  223 gtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacgag 285  Q
    ||||||| |||  ||||||||||| |||| |||| ||| |||||||||||||||| |||||||    
T  46411819 gtttgaatctcaaaccttatatatgttatacattgttcataccaattaagttaagctcacgag 46411881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 256
Target Start/End: Original strand, 836225 - 836270
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcatt 256  Q
    |||||||||| |||||||||||||||||||  ||||||| ||||||    
T  836225 gtggtggtcggagtttgaacctcggaccttgcatatattttgcatt 836270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 284
Target Start/End: Original strand, 2587703 - 2587763
Alignment:
Q  223 gtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacga 284  Q
    ||||||||| ||||||||| |||||||||||||||| | |||||||| || |||| ||||||    
T  2587703 gtttgaacc-cggaccttacatatattatgcattatccataccaattgagctaagctcacga 2587763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 256
Target Start/End: Complemental strand, 9783970 - 9783925
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcatt 256  Q
    ||||||| ||| ||||||||||| ||||||| ||||||||||||||    
T  9783970 gtggtggccgaggtttgaacctcagaccttacatatattatgcatt 9783925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 256
Target Start/End: Original strand, 16432947 - 16432992
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcatt 256  Q
    ||||||||||  ||||||||||| || |||||||||||||||||||    
T  16432947 gtggtggtcggggtttgaacctcagatcttatatatattatgcatt 16432992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 285
Target Start/End: Original strand, 22164260 - 22164333
Alignment:
Q  212 tggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacgag 285  Q
    |||||||||  ||||||||| | ||||||| |||||||||||||| ||| |||||| |||| |||  |||||||    
T  22164260 tggtggtcggggtttgaaccccagaccttacatatattatgcattgttcctaccaactaagctaaactcacgag 22164333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 284
Target Start/End: Complemental strand, 29908127 - 29908054
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacga 284  Q
    |||||| |||| ||||||||  ||||||||  |||||||||||||| | |||||||| | ||||||| ||||||    
T  29908127 gtggtgatcgaggtttgaactccggaccttgcatatattatgcattgtccttaccaactgagttaagctcacga 29908054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 284
Target Start/End: Original strand, 40070970 - 40071031
Alignment:
Q  223 gtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacga 284  Q
    |||||||| |||||||||  |||||||||||||| ||| |||||| | ||||||| ||||||    
T  40070970 gtttgaacttcggaccttgcatatattatgcattgttcataccaactgagttaagctcacga 40071031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 285
Target Start/End: Original strand, 50380827 - 50380900
Alignment:
Q  212 tggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacgag 285  Q
    ||||||||||  |||||||  ||||||||| |||||||||||||| ||| |||||| | | ||||| |||||||    
T  50380827 tggtggtcgagatttgaactccggaccttacatatattatgcattgttcataccaactgaattaagctcacgag 50380900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 283
Target Start/End: Original strand, 2228410 - 2228458
Alignment:
Q  235 gaccttatatatattatgcattattcttaccaattaagttaagttcacg 283  Q
    ||||||| |||||||||||||||||||||| || | |||||| ||||||    
T  2228410 gaccttacatatattatgcattattcttactaactgagttaaattcacg 2228458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 8734908 - 8734848
Alignment:
Q  224 tttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacga 284  Q
    |||||||||| ||||||| |||||||||||||| | | ||| |||| || |||||||||||    
T  8734908 tttgaacctcagaccttacatatattatgcattgtccatactaattgagctaagttcacga 8734848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 14202472 - 14202516
Alignment:
Q  214 gtggtcgaagtttgaacctcggaccttatatatattatgcattat 258  Q
    |||||||  ||||||||| ||||||||| ||||||||||||||||    
T  14202472 gtggtcggggtttgaaccccggaccttacatatattatgcattat 14202516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 256
Target Start/End: Original strand, 47015559 - 47015603
Alignment:
Q  212 tggtggtcgaagtttgaacctcggaccttatatatattatgcatt 256  Q
    ||||||||| |||||||||| | |||||| |||||||||||||||    
T  47015559 tggtggtcggagtttgaaccccagaccttgtatatattatgcatt 47015603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 267
Target Start/End: Complemental strand, 48223626 - 48223582
Alignment:
Q  223 gtttgaacctcggaccttatatatattatgcattattcttaccaa 267  Q
    ||||||||||||||  ||| |||||||||||||| ||||||||||    
T  48223626 gtttgaacctcggattttaaatatattatgcattgttcttaccaa 48223582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 276
Target Start/End: Original strand, 48824923 - 48824971
Alignment:
Q  228 aacctcggaccttatatatattatgcattattcttaccaattaagttaa 276  Q
    |||||| |||||||||||||||||||| | |||||||||| | ||||||    
T  48824923 aacctcagaccttatatatattatgcactgttcttaccaactgagttaa 48824971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 284
Target Start/End: Complemental strand, 52699419 - 52699371
Alignment:
Q  236 accttatatatattatgcattattcttaccaattaagttaagttcacga 284  Q
    |||||| |||||||||||||||||||||| |||| || |||| ||||||    
T  52699419 accttacatatattatgcattattcttactaattgagataagctcacga 52699371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 267
Target Start/End: Original strand, 56551594 - 56551638
Alignment:
Q  223 gtttgaacctcggaccttatatatattatgcattattcttaccaa 267  Q
    ||||||||||||||||||  |||||||||||||| | ||||||||    
T  56551594 gtttgaacctcggaccttgcatatattatgcattgtccttaccaa 56551638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 267
Target Start/End: Complemental strand, 20644074 - 20644019
Alignment:
Q  212 tggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaa 267  Q
    ||||||||| ||||||||| ||||| |||| |||||||||||||||||||||||||    
T  20644074 tggtggtcggagtttgaacgtcggatcttacatatattatgcattattcttaccaa 20644019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 211 - 285
Target Start/End: Original strand, 31837926 - 31838000
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacgag 285  Q
    ||||||||||| ||||||| | || |||||| ||||||||| |||||| | |||||||| |||||||||||||||    
T  31837926 gtggtggtcgaggtttgaatcccgaaccttacatatattatacattatccataccaattgagttaagttcacgag 31838000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 285
Target Start/End: Complemental strand, 41555364 - 41555291
Alignment:
Q  212 tggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacgag 285  Q
    ||||||||||||||||||| | ||||||||||| ||||||||||| ||| |||||| | ||||||  |||||||    
T  41555364 tggtggtcgaagtttgaactttggaccttatatgtattatgcattgttcctaccaactgagttaaactcacgag 41555291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 256
Target Start/End: Original strand, 43305899 - 43305944
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcatt 256  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||    
T  43305899 gtggtggtcgaagtttgaacctcgaaccttatatatattatacatt 43305944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 285
Target Start/End: Original strand, 14735883 - 14735957
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacgag 285  Q
    ||||||| || ||||||||||||| |||||| |||| ||||||||| | | ||||||||||| |||| |||||||    
T  14735883 gtggtggccggagtttgaacctcgaaccttacatattttatgcattgtccataccaattaagctaagctcacgag 14735957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 40797411 - 40797365
Alignment:
Q  235 gaccttatatatattatgcattattcttaccaattaagttaagttca 281  Q
    |||||| ||||||||||||||| | ||||||||||||||||||||||    
T  40797411 gaccttgtatatattatgcattgtccttaccaattaagttaagttca 40797365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 285
Target Start/End: Original strand, 41939098 - 41939172
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacgag 285  Q
    |||||||||| |||||||| |||  |||||| |||||||||||||||| | |||||| |||| |||| |||||||    
T  41939098 gtggtggtcggagtttgaatctcaaaccttacatatattatgcattatccctaccaactaagctaagctcacgag 41939172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 212 - 285
Target Start/End: Complemental strand, 30089119 - 30089046
Alignment:
Q  212 tggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacgag 285  Q
    |||||| ||| ||||||||| |||||||| ||||||||||||||| | | |||||| | || ||||||||||||    
T  30089119 tggtggccgaggtttgaaccccggaccttgtatatattatgcattgtccctaccaactgagctaagttcacgag 30089046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 212 - 285
Target Start/End: Complemental strand, 30125723 - 30125650
Alignment:
Q  212 tggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacgag 285  Q
    |||||| ||| ||||||||| |||||||| ||||||||||||||| | | |||||| | || ||||||||||||    
T  30125723 tggtggccgaggtttgaaccccggaccttgtatatattatgcattgtccctaccaactgagctaagttcacgag 30125650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 13100257 - 13100301
Alignment:
Q  214 gtggtcgaagtttgaacctcggaccttatatatattatgcattat 258  Q
    ||||||| |||||||||||||||||||  ||||||||||||||||    
T  13100257 gtggtcggagtttgaacctcggaccttggatatattatgcattat 13100301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 283
Target Start/End: Original strand, 17842715 - 17842774
Alignment:
Q  224 tttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacg 283  Q
    |||||||  |||| |||| |||||||||||||| |||||| ||| |||||||||||||||    
T  17842715 tttgaactccggatcttacatatattatgcattgttcttatcaactaagttaagttcacg 17842774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 282
Target Start/End: Original strand, 23250310 - 23250381
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcac 282  Q
    ||||||||||  |||||||||  |||||||  |||||||||||||| |||||||||| | ||||||| ||||    
T  23250310 gtggtggtcggggtttgaaccctggaccttgcatatattatgcattgttcttaccaactgagttaagctcac 23250381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 282
Target Start/End: Complemental strand, 30045524 - 30045453
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcac 282  Q
    ||||||| ||| ||||||| |||| ||||| ||||||||||||||| | | |||||||| || |||||||||    
T  30045524 gtggtggccgaggtttgaatctcgaaccttgtatatattatgcattgtccctaccaattgagctaagttcac 30045453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 282
Target Start/End: Complemental strand, 30050687 - 30050616
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcac 282  Q
    ||||||| ||| ||||||| |||| ||||| ||||||||||||||| | | |||||||| || |||||||||    
T  30050687 gtggtggccgaggtttgaatctcgaaccttgtatatattatgcattgtccctaccaattgagctaagttcac 30050616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 282
Target Start/End: Complemental strand, 30141731 - 30141660
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcac 282  Q
    ||||||| ||| ||||||| |||| ||||| ||||||||||||||| | | |||||||| || |||||||||    
T  30141731 gtggtggccgaggtttgaatctcgaaccttgtatatattatgcattgtccctaccaattgagctaagttcac 30141660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 285
Target Start/End: Original strand, 31815877 - 31815951
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacgag 285  Q
    ||||||||||  ||||||||| ||||||||  |||||||||||||| | | |||||| | ||||||| |||||||    
T  31815877 gtggtggtcggggtttgaaccccggaccttgcatatattatgcattgtccctaccaactgagttaagctcacgag 31815951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 284
Target Start/End: Complemental strand, 21497738 - 21497665
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacga 284  Q
    ||||||| ||| |||| ||||||| |||||  |||||||||||||| ||||||||||   ||||||| ||||||    
T  21497738 gtggtggccgaggtttaaacctcgaaccttgcatatattatgcattgttcttaccaaccgagttaagctcacga 21497665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 285
Target Start/End: Original strand, 34364510 - 34364559
Alignment:
Q  236 accttatatatattatgcattattcttaccaattaagttaagttcacgag 285  Q
    ||||| ||||||||||||||||||| |||||| ||||||||  |||||||    
T  34364510 accttgtatatattatgcattattcctaccaactaagttaaactcacgag 34364559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 284
Target Start/End: Complemental strand, 41165494 - 41165433
Alignment:
Q  223 gtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacga 284  Q
    |||||||||||  ||||||||||||||||||||||| | || ||| | ||||||| ||||||    
T  41165494 gtttgaacctcataccttatatatattatgcattatccataacaactgagttaagctcacga 41165433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 3020675 - 3020719
Alignment:
Q  235 gaccttatatatattatgcattattcttaccaattaagttaagtt 279  Q
    ||||||||||||||||| |||| |  |||||||||||||||||||    
T  3020675 gaccttatatatattatacattgtctttaccaattaagttaagtt 3020719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 7772472 - 7772516
Alignment:
Q  233 cggaccttatatatattatgcattattcttaccaattaagttaag 277  Q
    ||||||||  |||||||||||||||| |||||||||| |||||||    
T  7772472 cggaccttgcatatattatgcattatccttaccaattgagttaag 7772516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 267
Target Start/End: Complemental strand, 13000744 - 13000700
Alignment:
Q  223 gtttgaacctcggaccttatatatattatgcattattcttaccaa 267  Q
    |||| |||||||||||||| ||||||||||||||||  |||||||    
T  13000744 gtttaaacctcggaccttacatatattatgcattatctttaccaa 13000700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 284
Target Start/End: Complemental strand, 22527235 - 22527187
Alignment:
Q  236 accttatatatattatgcattattcttaccaattaagttaagttcacga 284  Q
    |||||| |||||||||||||||||||||  |||| ||||||||| ||||    
T  22527235 accttagatatattatgcattattcttattaatttagttaagtttacga 22527187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 29600007 - 29599963
Alignment:
Q  214 gtggtcgaagtttgaacctcggaccttatatatattatgcattat 258  Q
    ||||||| |||||||||| ||||||||  ||||||||||||||||    
T  29600007 gtggtcggagtttgaaccccggaccttggatatattatgcattat 29599963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 285
Target Start/End: Original strand, 33890169 - 33890241
Alignment:
Q  214 gtggtcgaagtttgaacctcggaccttatatatattatgcattattc-ttaccaattaagttaagttcacgag 285  Q
    ||||||| |||||||||  ||||||||| ||||||||||| || |||  |||||| ||| |||||||||||||    
T  33890169 gtggtcggagtttgaacgccggaccttacatatattatgcgttgttcaataccaactaaattaagttcacgag 33890241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 223 - 285
Target Start/End: Original strand, 24438284 - 24438346
Alignment:
Q  223 gtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacgag 285  Q
    ||||||||| || || ||| ||||||||||||||||||||||||| | |||||||||||||||    
T  24438284 gtttgaaccccgaactttacatatattatgcattattcttaccaactgagttaagttcacgag 24438346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 285
Target Start/End: Complemental strand, 2213347 - 2213294
Alignment:
Q  232 tcggaccttatatatattatgcattattcttaccaattaagttaagttcacgag 285  Q
    |||||||||  |||||||||||||| |||||||||||| |||||||||||||||    
T  2213347 tcggaccttgcatatattatgcattgttcttaccaattgagttaagttcacgag 2213294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 284
Target Start/End: Original strand, 8629686 - 8629759
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacga 284  Q
    ||||||||||| ||||||||| || |||||  |||||||||||||| | | |||||||| ||||||| ||||||    
T  8629686 gtggtggtcgaggtttgaaccccgaaccttgcatatattatgcattgtccataccaattgagttaagctcacga 8629759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 256
Target Start/End: Original strand, 17113450 - 17113495
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcatt 256  Q
    ||||||||||||||||||||||| ||||||  ||||||||||||||    
T  17113450 gtggtggtcgaagtttgaacctcagaccttgcatatattatgcatt 17113495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 267
Target Start/End: Complemental strand, 24248236 - 24248180
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaa 267  Q
    ||||||||||| | ||||||| ||||||||| |||||||||| ||||| ||||||||    
T  24248236 gtggtggtcgagggttgaaccccggaccttacatatattatgtattatccttaccaa 24248180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 236 - 283
Target Start/End: Complemental strand, 11713712 - 11713665
Alignment:
Q  236 accttatatatattatgcattattcttaccaattaagttaagttcacg 283  Q
    ||||||||||||||||||||||| |||||||||| | ||||| |||||    
T  11713712 accttatatatattatgcattatccttaccaattgatttaagctcacg 11713665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 282
Target Start/End: Original strand, 12459731 - 12459802
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcac 282  Q
    |||||||  |||||||||||| || |||||| |||||||||||||||||| ||| || |||| |||| ||||    
T  12459731 gtggtggctgaagtttgaaccccgaaccttacatatattatgcattattcatacaaactaagataagctcac 12459802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 285
Target Start/End: Original strand, 20013166 - 20013209
Alignment:
Q  242 tatatattatgcattattcttaccaattaagttaagttcacgag 285  Q
    ||||||||||||||||||| |||||||| || ||||||||||||    
T  20013166 tatatattatgcattattcctaccaattgagctaagttcacgag 20013209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 285
Target Start/End: Original strand, 8138448 - 8138522
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacgag 285  Q
    |||||||| || ||||||||| | ||||||| |||||||||||||| |||||| ||| | || ||| ||||||||    
T  8138448 gtggtggttgaggtttgaaccccagaccttacatatattatgcattgttcttatcaactgagctaaattcacgag 8138522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 285
Target Start/End: Complemental strand, 28898915 - 28898853
Alignment:
Q  223 gtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacgag 285  Q
    ||||||||  ||||||||  |||||||||||||| | |||||||| ||||||||| |||||||    
T  28898915 gtttgaactccggacctttcatatattatgcattgtccttaccaactaagttaagatcacgag 28898853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 277
Target Start/End: Complemental strand, 31971588 - 31971534
Alignment:
Q  223 gtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaag 277  Q
    ||||||||||||||||||  |||||||||||||| | |||||||| | |||||||    
T  31971588 gtttgaacctcggaccttgcatatattatgcattgtccttaccaactgagttaag 31971534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 285
Target Start/End: Complemental strand, 34701218 - 34701144
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacgag 285  Q
    ||||||| || |||||||||||| ||||||  |||||||||||||| ||| |||||| | |  ||||||||||||    
T  34701218 gtggtggccggagtttgaacctcagaccttgcatatattatgcattgttcctaccaactgaactaagttcacgag 34701144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 284
Target Start/End: Complemental strand, 404218 - 404161
Alignment:
Q  227 gaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacga 284  Q
    ||||||||||| ||  |||||||||||||| | |||||||| ||||||||| ||||||    
T  404218 gaacctcggacattgcatatattatgcattgtccttaccaactaagttaagctcacga 404161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 2105965 - 2105920
Alignment:
Q  222 agtttgaacctcggaccttatatatattatgcattattcttaccaa 267  Q
    ||||||||||||| |||||| |||||||||||||| || |||||||    
T  2105965 agtttgaacctcgaaccttacatatattatgcattgtttttaccaa 2105920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 284
Target Start/End: Complemental strand, 4826361 - 4826288
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacga 284  Q
    ||||||| || ||||||||||||| |||||| |||||||||||||| |   |||||||| |  |||||||||||    
T  4826361 gtggtggccggagtttgaacctcgaaccttacatatattatgcattgtctctaccaattgaactaagttcacga 4826288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 256
Target Start/End: Complemental strand, 15187134 - 15187089
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcatt 256  Q
    ||||||||||  ||||||||||||||||||  ||||||||||||||    
T  15187134 gtggtggtcggggtttgaacctcggaccttgcatatattatgcatt 15187089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 256
Target Start/End: Original strand, 15473472 - 15473517
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcatt 256  Q
    ||||||||||  ||||||||||||||||||  ||||||||||||||    
T  15473472 gtggtggtcggggtttgaacctcggaccttgcatatattatgcatt 15473517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 285
Target Start/End: Original strand, 16125029 - 16125090
Alignment:
Q  224 tttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacgag 285  Q
    |||||||||||||| ||  |||||||||||||| ||| |||||| ||| ||||| |||||||    
T  16125029 tttgaacctcggactttgcatatattatgcattgttcataccaactaatttaagctcacgag 16125090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 285
Target Start/End: Complemental strand, 16390499 - 16390426
Alignment:
Q  212 tggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacgag 285  Q
    |||||| ||| ||||||||| ||||||||| |||||||||||||| | | |||||| | || |||| |||||||    
T  16390499 tggtggccgaggtttgaaccccggaccttacatatattatgcattgtccctaccaactgaggtaagctcacgag 16390426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 252
Target Start/End: Complemental strand, 27140245 - 27140204
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatg 252  Q
    ||||||| || ||||||||||||| |||||||||||||||||    
T  27140245 gtggtggccgtagtttgaacctcgaaccttatatatattatg 27140204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 283
Target Start/End: Original strand, 3808120 - 3808180
Alignment:
Q  223 gtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacg 283  Q
    ||||||| ||||||||||  |||||||||||||| | ||||| || | |||||||||||||    
T  3808120 gtttgaatctcggaccttgcatatattatgcattgtccttactaactgagttaagttcacg 3808180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 267
Target Start/End: Complemental strand, 29457252 - 29457196
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaa 267  Q
    |||||||  |||||||||||| |  ||||||||||||||||||||| ||| ||||||    
T  29457252 gtggtggctgaagtttgaaccacaaaccttatatatattatgcatttttcctaccaa 29457196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 284
Target Start/End: Original strand, 30071506 - 30071579
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacga 284  Q
    ||||||||||  ||| |||||||  ||||| ||||||||||||||| |||||| ||| ||||||||||||||||    
T  30071506 gtggtggtcggggttagaacctcaaaccttgtatatattatgcattgttcttatcaactaagttaagttcacga 30071579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 285
Target Start/End: Complemental strand, 2181175 - 2181125
Alignment:
Q  235 gaccttatatatattatgcattattcttaccaattaagttaagttcacgag 285  Q
    ||||||| |||||||||||||| ||| |||||||||||||||| |||||||    
T  2181175 gaccttacatatattatgcattgttcctaccaattaagttaagctcacgag 2181125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 285
Target Start/End: Complemental strand, 9241074 - 9241012
Alignment:
Q  223 gtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacgag 285  Q
    |||||||| |||||||||| |||||||||||||| | |||||||||| | ||||| |||||||    
T  9241074 gtttgaacatcggaccttacatatattatgcattgtacttaccaattgatttaagctcacgag 9241012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 284
Target Start/End: Original strand, 3456816 - 3456884
Alignment:
Q  215 tggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacga 284  Q
    |||| |||||||||||| || |||||| |||||||||||||| ||| || ||||| ||||||||||||||    
T  3456816 tggttgaagtttgaacc-cgaaccttacatatattatgcattgttcatatcaattgagttaagttcacga 3456884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 267
Target Start/End: Complemental strand, 5179864 - 5179808
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaa 267  Q
    ||||||| ||||||||||||| || ||||| ||||||||||||||| | ||||||||    
T  5179864 gtggtggccgaagtttgaaccccgaaccttgtatatattatgcattgtccttaccaa 5179808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 282
Target Start/End: Original strand, 41430458 - 41430513
Alignment:
Q  227 gaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcac 282  Q
    ||||||| ||||||  |||||| || ||||||| ||||||||||||||||||||||    
T  41430458 gaacctcagaccttgcatatataatacattatttttaccaattaagttaagttcac 41430513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 286
Target Start/End: Complemental strand, 41603120 - 41603057
Alignment:
Q  223 gtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacgagt 286  Q
    ||||||||| | ||||||| |||||||||||||| ||| |||||||| |||||||  |||||||    
T  41603120 gtttgaaccccagaccttacatatattatgcattgttcataccaattgagttaagcccacgagt 41603057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 282
Target Start/End: Complemental strand, 3681675 - 3681629
Alignment:
Q  236 accttatatatattatgcattattcttaccaattaagttaagttcac 282  Q
    ||||||||||||||||| ||||| ||||||||||||| |||| ||||    
T  3681675 accttatatatattatgaattatccttaccaattaagataagctcac 3681629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 282
Target Start/End: Complemental strand, 4263873 - 4263815
Alignment:
Q  224 tttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcac 282  Q
    |||||||||||||||||  ||| |||||||||| |||||| ||| | ||||||||||||    
T  4263873 tttgaacctcggaccttgcatacattatgcattgttcttatcaactgagttaagttcac 4263815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 285
Target Start/End: Original strand, 10732781 - 10732839
Alignment:
Q  227 gaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacgag 285  Q
    |||||| | ||||| ||||||||||||||| ||| |||||||| ||||||| |||||||    
T  10732781 gaaccttgaaccttgtatatattatgcattgttcataccaattgagttaagctcacgag 10732839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 285
Target Start/End: Original strand, 13357431 - 13357505
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacgag 285  Q
    ||||||| ||| |||||||||||| |||||  |||||||||||||| | | |||||| | ||||||| |||||||    
T  13357431 gtggtggccgaggtttgaacctcgtaccttgcatatattatgcattgtccataccaactgagttaagctcacgag 13357505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 285
Target Start/End: Original strand, 29924939 - 29924981
Alignment:
Q  243 atatattatgcattattcttaccaattaagttaagttcacgag 285  Q
    |||||||||||||| |||||| ||| |||||||||||||||||    
T  29924939 atatattatgcattgttcttaacaactaagttaagttcacgag 29924981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 285
Target Start/End: Complemental strand, 33743646 - 33743572
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacgag 285  Q
    ||||||| ||||||||||||||||||||||  |||| ||||||||| | || ||||| | || || |||||||||    
T  33743646 gtggtggccgaagtttgaacctcggaccttgcatattttatgcattgtcctcaccaactgagctatgttcacgag 33743572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 256
Target Start/End: Original strand, 44632175 - 44632220
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcatt 256  Q
    ||||||||||  ||||||||| || |||||||||||||||||||||    
T  44632175 gtggtggtcggggtttgaaccccgaaccttatatatattatgcatt 44632220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 256
Target Start/End: Complemental strand, 574454 - 574410
Alignment:
Q  212 tggtggtcgaagtttgaacctcggaccttatatatattatgcatt 256  Q
    |||||||||||||| ||||  ||||||||| ||||||||||||||    
T  574454 tggtggtcgaagttcgaactccggaccttacatatattatgcatt 574410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 285
Target Start/End: Original strand, 24044675 - 24044727
Alignment:
Q  233 cggaccttatatatattatgcattattcttaccaattaagttaagttcacgag 285  Q
    ||||||||| |||| ||||  ||| || |||||||||||||||||||||||||    
T  24044675 cggaccttacatattttatatattgtttttaccaattaagttaagttcacgag 24044727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 283
Target Start/End: Original strand, 34420852 - 34420924
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacg 283  Q
    ||||||||||| |||||||||||  |||||  |||| ||||||||| | | |||||||| ||||||| |||||    
T  34420852 gtggtggtcgaggtttgaacctcaaaccttgcatattttatgcattgtccataccaattgagttaagctcacg 34420924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 39138988 - 39139036
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcattatt 259  Q
    |||||||||| |||||||||| || |||||| |||| ||||||||||||    
T  39138988 gtggtggtcggagtttgaaccccgaaccttacatattttatgcattatt 39139036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 267
Target Start/End: Original strand, 42208471 - 42208515
Alignment:
Q  223 gtttgaacctcggaccttatatatattatgcattattcttaccaa 267  Q
    ||||||||||||||||||  |||||||||||||| | ||||||||    
T  42208471 gtttgaacctcggaccttgcatatattatgcattgtccttaccaa 42208515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 283
Target Start/End: Complemental strand, 44019604 - 44019548
Alignment:
Q  227 gaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacg 283  Q
    |||| |||||||||  |||||||||||||| |||||||||| | || ||||||||||    
T  44019604 gaacttcggaccttgcatatattatgcattgttcttaccaactgagctaagttcacg 44019548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 285
Target Start/End: Original strand, 5107236 - 5107309
Alignment:
Q  212 tggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacgag 285  Q
    |||||||||  ||| ||||||||||||||  |||||||||||||||||| |||||| | ||||||| |||||||    
T  5107236 tggtggtcggggttcgaacctcggaccttgcatatattatgcattattcataccaactgagttaagctcacgag 5107309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 276
Target Start/End: Original strand, 14681247 - 14681309
Alignment:
Q  214 gtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaa 276  Q
    |||| ||||||||||||| || ||||| |||||||||||||||||  ||||||| ||||||||    
T  14681247 gtggacgaagtttgaaccccgaaccttctatatattatgcattatctttaccaactaagttaa 14681309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 284
Target Start/End: Complemental strand, 36170126 - 36170053
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacga 284  Q
    |||||||||  ||||||||||||  | |||| |||||||||||||||||| || ||||| ||||||| ||||||    
T  36170126 gtggtggtcagagtttgaacctcatatcttacatatattatgcattattcctagcaattgagttaagctcacga 36170053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 256
Target Start/End: Original strand, 37054259 - 37054304
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcatt 256  Q
    |||||||||| |||||||||| || |||||||||||||||||||||    
T  37054259 gtggtggtcggagtttgaaccccgaaccttatatatattatgcatt 37054304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 256
Target Start/End: Original strand, 42817102 - 42817147
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcatt 256  Q
    ||||||||||| ||||||||| |||||||| |||||||||||||||    
T  42817102 gtggtggtcgaggtttgaaccccggaccttgtatatattatgcatt 42817147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 283
Target Start/End: Original strand, 16579376 - 16579436
Alignment:
Q  223 gtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacg 283  Q
    ||||||||| ||||||||  |||||||||||||| ||| |||||| | |||||||||||||    
T  16579376 gtttgaaccacggaccttgcatatattatgcattgttcataccaactgagttaagttcacg 16579436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 282
Target Start/End: Original strand, 1538798 - 1538869
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcac 282  Q
    ||||||||||  ||||||||||||||||||  ||||||||||| || ||  |||||||| ||||||| ||||    
T  1538798 gtggtggtcggcgtttgaacctcggaccttgcatatattatgcgttgtttataccaattgagttaagctcac 1538869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 284
Target Start/End: Complemental strand, 14124341 - 14124299
Alignment:
Q  242 tatatattatgcattattcttaccaattaagttaagttcacga 284  Q
    ||||||||||||||| | |||||||| ||||||||||||||||    
T  14124341 tatatattatgcattgtccttaccaactaagttaagttcacga 14124299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 285
Target Start/End: Original strand, 23422858 - 23422931
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacgag 285  Q
    ||||||| || ||||||||| ||| || ||  |||||||||||||| |||| ||||||| |||||||||||||||    
T  23422858 gtggtggccggagtttgaacatcgaactttgcatatattatgcattgttct-accaattgagttaagttcacgag 23422931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 284
Target Start/End: Original strand, 29667892 - 29667934
Alignment:
Q  242 tatatattatgcattattcttaccaattaagttaagttcacga 284  Q
    ||||||||||||||| || ||||||||| ||||||||||||||    
T  29667892 tatatattatgcattgtttttaccaattgagttaagttcacga 29667934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 276
Target Start/End: Original strand, 4763188 - 4763241
Alignment:
Q  223 gtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaa 276  Q
    ||||||||| ||||||||| |||||||||||||| |  ||||||||| ||||||    
T  4763188 gtttgaaccccggaccttacatatattatgcattgtctttaccaattgagttaa 4763241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 284
Target Start/End: Complemental strand, 5614824 - 5614763
Alignment:
Q  223 gtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacga 284  Q
    ||||||||| | ||||||| |||||||||||||||| | || ||| | ||||||||||||||    
T  5614824 gtttgaacccccgaccttacatatattatgcattatccatatcaactgagttaagttcacga 5614763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 267
Target Start/End: Complemental strand, 18391671 - 18391615
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaa 267  Q
    ||||||||||| ||| ||||||||||||||  |||| ||||||||| | ||||||||    
T  18391671 gtggtggtcgaggttcgaacctcggaccttgcatattttatgcattgtccttaccaa 18391615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 267
Target Start/End: Complemental strand, 22745944 - 22745904
Alignment:
Q  227 gaacctcggaccttatatatattatgcattattcttaccaa 267  Q
    |||||||| |||||| |||||||||||||||| ||||||||    
T  22745944 gaacctcgtaccttacatatattatgcattatccttaccaa 22745904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 285
Target Start/End: Original strand, 7464481 - 7464555
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacgag 285  Q
    ||||||||||  ||||||||| ||||||||| |||||||||||||| | | |||||| | ||||||| |||||||    
T  7464481 gtggtggtcggggtttgaaccccggaccttacatatattatgcattgtccctaccaactgagttaagctcacgag 7464555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 285
Target Start/End: Original strand, 17035915 - 17035977
Alignment:
Q  223 gtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacgag 285  Q
    ||||||||||| | ||||| ||||||||| |||||| |||||||| |||||||| ||||||||    
T  17035915 gtttgaacctcaggccttacatatattatacattatccttaccaactaagttaaattcacgag 17035977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 285
Target Start/End: Original strand, 53633623 - 53633681
Alignment:
Q  227 gaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacgag 285  Q
    ||||| ||||||||| |||||||||||||||| |||||||| | ||||||| |||||||    
T  53633623 gaaccccggaccttacatatattatgcattatccttaccaactgagttaagctcacgag 53633681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 228 - 285
Target Start/End: Original strand, 2105705 - 2105762
Alignment:
Q  228 aacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacgag 285  Q
    |||||||||||||  ||||||||| ||||||| ||||||| | |||||||||||||||    
T  2105705 aacctcggaccttgcatatattatacattatttttaccaactgagttaagttcacgag 2105762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 223 - 284
Target Start/End: Original strand, 47377351 - 47377412
Alignment:
Q  223 gtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacga 284  Q
    |||||||||||| ||||| ||||||||||||||| | |||||||| | ||||||| ||||||    
T  47377351 gtttgaacctcgaaccttgtatatattatgcattgtccttaccaactgagttaagctcacga 47377412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 283
Target Start/End: Complemental strand, 21245860 - 21245792
Alignment:
Q  215 tggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacg 283  Q
    ||||||| ||||||||| | ||||||| |||||||||||||| | |||||||| |||| |||| |||||    
T  21245860 tggtcgaggtttgaaccccagaccttacatatattatgcattgtccttaccaactaagctaagctcacg 21245792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 31214705 - 31214657
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcattatt 259  Q
    |||||||||| |||||||| | ||||||||| |||||||||||||||||    
T  31214705 gtggtggtcggagtttgaatcccggaccttacatatattatgcattatt 31214657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 214 - 285
Target Start/End: Original strand, 4332660 - 4332731
Alignment:
Q  214 gtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacgag 285  Q
    ||||||| |||||||||| ||||||||  ||||||||||||||||||  ||||| | || |||| |||||||    
T  4332660 gtggtcggagtttgaaccccggaccttggatatattatgcattattcaaaccaactgagctaagctcacgag 4332731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 219 - 282
Target Start/End: Original strand, 43630416 - 43630479
Alignment:
Q  219 cgaagtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcac 282  Q
    |||| ||||||||||  |||||| |||||||||||||| ||| |||||||| |||||| |||||    
T  43630416 cgaaatttgaacctcaaaccttacatatattatgcattgttcataccaattgagttaacttcac 43630479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 282
Target Start/End: Original strand, 24088308 - 24088362
Alignment:
Q  228 aacctcggaccttatatatattatgcattattcttaccaattaagttaagttcac 282  Q
    |||||| ||| |||||||||||||||||||||| || |||||||| |||| ||||    
T  24088308 aacctcagacattatatatattatgcattattcctatcaattaagctaagctcac 24088362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 281
Target Start/End: Original strand, 38869524 - 38869578
Alignment:
Q  227 gaacctcggaccttatatatattatgcattattcttaccaattaagttaagttca 281  Q
    |||||||||| ||| ||||||||||||||| |||||||||| | || ||||||||    
T  38869524 gaacctcggatcttgtatatattatgcattgttcttaccaactgagctaagttca 38869578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 285
Target Start/End: Complemental strand, 53706882 - 53706821
Alignment:
Q  223 gtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacgag 285  Q
    ||||||||| ||||||||| |||| | ||||||| | |||||||||||||||||| |||||||    
T  53706882 gtttgaacc-cggaccttacatatttaatgcattgtccttaccaattaagttaagctcacgag 53706821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 256
Target Start/End: Original strand, 9027378 - 9027423
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcatt 256  Q
    ||||||| |||||||| ||||||  |||||||||||||||||||||    
T  9027378 gtggtggccgaagtttaaacctcaaaccttatatatattatgcatt 9027423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 284
Target Start/End: Complemental strand, 21160111 - 21160050
Alignment:
Q  223 gtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacga 284  Q
    ||||||||| | ||||||| |||||||||||||||| | || ||| | ||||||||||||||    
T  21160111 gtttgaacccccgaccttacatatattatgcattatccatatcaactgagttaagttcacga 21160050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 287
Target Start/End: Complemental strand, 25874202 - 25874125
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatata-tattatgcattattcttaccaattaagttaagttcacgagta 287  Q
    ||||||||||| | ||||||| ||||||||| ||| ||||||||||| | | |||||| | ||||||| |||||||||    
T  25874202 gtggtggtcgatggttgaaccccggaccttacatattattatgcattgtccataccaactgagttaagctcacgagta 25874125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 285
Target Start/End: Complemental strand, 26973407 - 26973358
Alignment:
Q  236 accttatatatattatgcattattcttaccaattaagttaagttcacgag 285  Q
    |||||| |||||||||||||| | |||||||||| | |||||||||||||    
T  26973407 accttacatatattatgcattgtccttaccaatttaattaagttcacgag 26973358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 285
Target Start/End: Complemental strand, 27432280 - 27432231
Alignment:
Q  236 accttatatatattatgcattattcttaccaattaagttaagttcacgag 285  Q
    |||||| |||||||||||||| | | |||||| |||||||||||||||||    
T  27432280 accttacatatattatgcattgtacataccaactaagttaagttcacgag 27432231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 284
Target Start/End: Original strand, 32928578 - 32928650
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacga 284  Q
    ||||||||||  ||||||||  | || ||||||||||||||||||| ||| ||||||||||| |||| ||||||    
T  32928578 gtggtggtcggggtttgaactccagatcttatatatattatgcattgttc-taccaattaagctaagctcacga 32928650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 276
Target Start/End: Original strand, 39869813 - 39869862
Alignment:
Q  227 gaacctcggaccttatatatattatgcattattcttaccaattaagttaa 276  Q
    |||||||||||||| ||||||||||||||| | |||||||| | ||||||    
T  39869813 gaacctcggaccttgtatatattatgcattgtccttaccaactgagttaa 39869862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 287
Target Start/End: Original strand, 41442943 - 41442992
Alignment:
Q  238 cttatatatattatgcattattcttaccaattaagttaagttcacgagta 287  Q
    |||| |||||| ||||||| | |||||||||| |||||||||||||||||    
T  41442943 cttacatatataatgcattgtccttaccaattgagttaagttcacgagta 41442992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 285
Target Start/End: Original strand, 48315027 - 48315088
Alignment:
Q  224 tttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacgag 285  Q
    |||||||| ||||||||  |||||||||||||||| |||||||| | || |||| |||||||    
T  48315027 tttgaaccccggaccttgcatatattatgcattatccttaccaactgagctaagctcacgag 48315088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 283
Target Start/End: Complemental strand, 2563988 - 2563928
Alignment:
Q  223 gtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacg 283  Q
    |||||||||||| |||||| ||||||||| ||||||| ||| ||| | ||||||| |||||    
T  2563988 gtttgaacctcgaaccttacatatattattcattatttttatcaactgagttaagctcacg 2563928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 267
Target Start/End: Original strand, 28430555 - 28430611
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaa 267  Q
    |||||||||  |||||||||||| ||||||  |||||||||||||| ||| ||||||    
T  28430555 gtggtggtcagagtttgaacctcagaccttgcatatattatgcattgttcgtaccaa 28430611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 259
Target Start/End: Complemental strand, 31463543 - 31463507
Alignment:
Q  223 gtttgaacctcggaccttatatatattatgcattatt 259  Q
    ||||||||||| ||||||| |||||||||||||||||    
T  31463543 gtttgaacctcagaccttacatatattatgcattatt 31463507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 267
Target Start/End: Complemental strand, 51614264 - 51614224
Alignment:
Q  227 gaacctcggaccttatatatattatgcattattcttaccaa 267  Q
    ||||||||||||||  ||||||| |||||||||||||||||    
T  51614264 gaacctcggaccttgcatatattttgcattattcttaccaa 51614224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 282
Target Start/End: Original strand, 52454979 - 52455039
Alignment:
Q  223 gtttgaacctcggaccttatatatattatgca-ttattcttaccaattaagttaagttcac 282  Q
    ||||||||| || ||||| ||||||||||||| || |||||||||||| || |||||||||    
T  52454979 gtttgaaccccgaaccttgtatatattatgcattttttcttaccaattgagctaagttcac 52455039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 267
Target Start/End: Original strand, 53438685 - 53438741
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaa 267  Q
    ||||||||||||||||||| |||  | |||| ||||||||| |||| ||||||||||    
T  53438685 gtggtggtcgaagtttgaaactcaaatcttacatatattatacattgttcttaccaa 53438741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 285
Target Start/End: Complemental strand, 3777789 - 3777715
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacgag 285  Q
    ||||||||||| |||||||||||| ||||| |||||||||| |||||| | || ||| | ||||||| |||||||    
T  3777789 gtggtggtcgaggtttgaacctcgaaccttgtatatattatacattatccatatcaactgagttaagctcacgag 3777715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 285
Target Start/End: Complemental strand, 31338090 - 31338016
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacgag 285  Q
    |||||||||| |||||||| | || ||||| ||||||||||||||||||| | |||| | ||||||| |||||||    
T  31338090 gtggtggtcggagtttgaatcccgcaccttgtatatattatgcattattcatgccaactgagttaagctcacgag 31338016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 12591804 - 12591853
Alignment:
Q  218 tcgaagtttgaacctcggaccttatatatattatgcattattcttaccaa 267  Q
    |||| |||||||| |||||| |||||||||||||||||||||| ||||||    
T  12591804 tcgaggtttgaacatcggactttatatatattatgcattattcctaccaa 12591853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 284
Target Start/End: Complemental strand, 29042608 - 29042535
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacga 284  Q
    ||||||||||   |||||||| |||| |||| |||||||||||||||| | |||||||| ||||||||| ||||    
T  29042608 gtggtggtcgggatttgaaccccggatcttacatatattatgcattatccctaccaattgagttaagtttacga 29042535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 267
Target Start/End: Original strand, 49431995 - 49432039
Alignment:
Q  223 gtttgaacctcggaccttatatatattatgcattattcttaccaa 267  Q
    ||||||||| ||||||||| |||||||||||||||||| ||||||    
T  49431995 gtttgaaccccggaccttacatatattatgcattattcctaccaa 49432039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 282
Target Start/End: Original strand, 33153882 - 33153941
Alignment:
Q  223 gtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcac 282  Q
    ||||||||||||||||||| |||||||||||||| | | |||||| | ||||||| ||||    
T  33153882 gtttgaacctcggaccttacatatattatgcattgtccctaccaactgagttaagctcac 33153941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 285
Target Start/End: Original strand, 8269358 - 8269432
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacgag 285  Q
    ||||||||||  ||||||||| ||||||||  |||||||||| ||| | |||||||| | || ||||||||||||    
T  8269358 gtggtggtcggggtttgaaccccggaccttgcatatattatgtattgtccttaccaactgagctaagttcacgag 8269432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 282
Target Start/End: Original strand, 12522110 - 12522180
Alignment:
Q  212 tggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcac 282  Q
    |||||||||  ||||||||||| |||||| |||||||||||| || ||| |||||||| || |||| ||||    
T  12522110 tggtggtcggggtttgaacctcagaccttgtatatattatgcgttgttcataccaattgagctaagctcac 12522180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 285
Target Start/End: Original strand, 30678803 - 30678877
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacgag 285  Q
    ||||||| |||||||||||||  | |||||| |||||||||||||| | | |||||| | ||||||| |||||||    
T  30678803 gtggtggccgaagtttgaaccatgaaccttacatatattatgcattgtccctaccaactgagttaagctcacgag 30678877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 285
Target Start/End: Complemental strand, 30795756 - 30795698
Alignment:
Q  227 gaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacgag 285  Q
    |||||| |||||||  |||||||||||||| |||||||||| | || ||||||||||||    
T  30795756 gaaccttggaccttgcatatattatgcattgttcttaccaactgagctaagttcacgag 30795698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 31092708 - 31092662
Alignment:
Q  235 gaccttatatatattatgcattattcttaccaattaagttaagttca 281  Q
    ||||||| |||||||||||||||| |||||||| | |||||||||||    
T  31092708 gaccttacatatattatgcattatccttaccaaatgagttaagttca 31092662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 285
Target Start/End: Original strand, 37944132 - 37944194
Alignment:
Q  223 gtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacgag 285  Q
    |||||||||  ||| |||| |||||||||||||||| |||||||||| || |||| |||||||    
T  37944132 gtttgaaccctggatcttacatatattatgcattatccttaccaattgagataagctcacgag 37944194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 276
Target Start/End: Original strand, 17221526 - 17221575
Alignment:
Q  227 gaacctcggaccttatatatattatgcattattcttaccaattaagttaa 276  Q
    ||||||||||||||  |||||||||||||| |||||||||| | ||||||    
T  17221526 gaacctcggaccttgcatatattatgcattgttcttaccaacttagttaa 17221575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 18521285 - 18521244
Alignment:
Q  244 tatattatgcattattcttaccaattaagttaagttcacgag 285  Q
    ||||||||||||| | |||||||||| |||||||||||||||    
T  18521285 tatattatgcattgtccttaccaattgagttaagttcacgag 18521244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 264
Target Start/End: Complemental strand, 27127295 - 27127242
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttac 264  Q
    ||||||||||| ||||||||  | |||||| ||||||||||||||||| |||||    
T  27127295 gtggtggtcgatgtttgaacgccagaccttgtatatattatgcattatccttac 27127242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 267
Target Start/End: Original strand, 29059422 - 29059451
Alignment:
Q  238 cttatatatattatgcattattcttaccaa 267  Q
    ||||||||||||||||||||||||||||||    
T  29059422 cttatatatattatgcattattcttaccaa 29059451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 283
Target Start/End: Complemental strand, 43397803 - 43397770
Alignment:
Q  250 atgcattattcttaccaattaagttaagttcacg 283  Q
    |||||||||||||||||| |||||||||||||||    
T  43397803 atgcattattcttaccaactaagttaagttcacg 43397770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 256
Target Start/End: Original strand, 50372351 - 50372396
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcatt 256  Q
    |||||||| || ||||||||||| ||||| ||||||||||||||||    
T  50372351 gtggtggttgaggtttgaacctcagacctgatatatattatgcatt 50372396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 267
Target Start/End: Complemental strand, 13778632 - 13778576
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaa 267  Q
    ||||||||||| ||||||||| || |||||  |||| ||||||||||||| ||||||    
T  13778632 gtggtggtcgaggtttgaaccccgaaccttgcatattttatgcattattcataccaa 13778576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 276
Target Start/End: Complemental strand, 19316231 - 19316183
Alignment:
Q  228 aacctcggaccttatatatattatgcattattcttaccaattaagttaa 276  Q
    ||||||| ||||||||||||||||||||| ||| ||| |||| ||||||    
T  19316231 aacctcgaaccttatatatattatgcattgttcatactaattgagttaa 19316183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 22946572 - 22946612
Alignment:
Q  243 atatattatgcattattcttaccaattaagttaagttcacg 283  Q
    |||||||||||||| |||||||||| |||| ||||||||||    
T  22946572 atatattatgcattgttcttaccaactaagctaagttcacg 22946612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 283
Target Start/End: Original strand, 32950751 - 32950823
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacg 283  Q
    ||||||||||| ||||||||  ||||||||  |||||||||||||| ||  |||||| | ||||||| |||||    
T  32950751 gtggtggtcgaggtttgaactccggaccttgcatatattatgcattgtttataccaactgagttaagctcacg 32950823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 263
Target Start/End: Complemental strand, 34595943 - 34595891
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcattattctta 263  Q
    ||||||| ||| ||||||||| ||||||||  |||||||||||||||| ||||    
T  34595943 gtggtggccgaggtttgaaccccggaccttgcatatattatgcattatcctta 34595891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 283
Target Start/End: Complemental strand, 37050984 - 37050928
Alignment:
Q  227 gaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacg 283  Q
    ||||| ||||||||  |||| ||||||||||||| |||||||| ||||||| |||||    
T  37050984 gaaccccggaccttgcatattttatgcattattcataccaattgagttaagctcacg 37050928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 41769808 - 41769852
Alignment:
Q  214 gtggtcgaagtttgaacctcggaccttatatatattatgcattat 258  Q
    ||||||| |||||||||| ||||||||  ||||||||||||||||    
T  41769808 gtggtcggagtttgaaccccggaccttggatatattatgcattat 41769852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 287
Target Start/End: Complemental strand, 46334834 - 46334770
Alignment:
Q  223 gtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacgagta 287  Q
    ||||||| ||| |||||| ||||| ||||||||| |||||| ||| | |||||||||||| ||||    
T  46334834 gtttgaatctcagaccttgtatattttatgcattgttcttatcaactgagttaagttcacaagta 46334770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 224 - 269
Target Start/End: Complemental strand, 15999 - 15954
Alignment:
Q  224 tttgaacctcggaccttatatatattatgcattattcttaccaatt 269  Q
    ||||||||||||| ||||||||||||||||||| || |||||||||    
T  15999 tttgaacctcggatcttatatatattatgcattgtttttaccaatt 15954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 281
Target Start/End: Original strand, 17761 - 17831
Alignment:
Q  211 gtggtggtcgaagtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttca 281  Q
    ||||| ||||||||||||| |||  |||||  |||||||||||||| | | |||||| |||||||||||||    
T  17761 gtggttgtcgaagtttgaaactcaaaccttgcatatattatgcattttccctaccaactaagttaagttca 17831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 283
Target Start/End: Complemental strand, 45998 - 45942
Alignment:
Q  227 gaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacg 283  Q
    |||||||||| |||  ||||||||| ||||||||||||||| | || ||||||||||    
T  45998 gaacctcggatcttgcatatattatacattattcttaccaactgagctaagttcacg 45942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 283
Target Start/End: Original strand, 61572 - 61632
Alignment:
Q  223 gtttgaacctcggaccttatatatattatgcattattcttaccaattaagttaagttcacg 283  Q
    |||||||||  |||||||| ||| |||||||||||| |||||||| | ||||||| |||||    
T  61572 gtttgaaccctggaccttacatacattatgcattatccttaccaactgagttaagctcacg 61632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University