View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17056_low_1 (Length: 1011)

Name: NF17056_low_1
Description: NF17056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17056_low_1
NF17056_low_1
[»] chr4 (16 HSPs)
chr4 (20-747)||(9603041-9603768)
chr4 (20-615)||(9594238-9594833)
chr4 (20-700)||(9582445-9583136)
chr4 (20-700)||(9588140-9588831)
chr4 (21-539)||(9568282-9568806)
chr4 (797-996)||(9603823-9604022)
chr4 (138-539)||(9573428-9573816)
chr4 (429-525)||(54295949-54296045)
chr4 (135-387)||(54295670-54295919)
chr4 (453-526)||(37894927-37895000)
chr4 (862-938)||(30441368-30441444)
chr4 (839-902)||(782390-782453)
chr4 (839-939)||(7257305-7257405)
chr4 (885-940)||(10156765-10156820)
chr4 (839-895)||(3664230-3664286)
chr4 (839-901)||(55301174-55301235)
[»] chr6 (33 HSPs)
chr6 (423-529)||(32745744-32745850)
chr6 (418-544)||(32973513-32973639)
chr6 (423-526)||(29123217-29123320)
chr6 (427-524)||(29144359-29144456)
chr6 (423-523)||(34279400-34279500)
chr6 (429-524)||(29130392-29130487)
chr6 (423-514)||(29149753-29149844)
chr6 (423-545)||(29152965-29153087)
chr6 (427-523)||(34259145-34259241)
chr6 (797-939)||(7591053-7591196)
chr6 (839-921)||(989501-989583)
chr6 (427-524)||(21379332-21379429)
chr6 (456-541)||(34281021-34281106)
chr6 (839-938)||(6978498-6978598)
chr6 (429-516)||(29299150-29299237)
chr6 (840-924)||(33450815-33450900)
chr6 (428-524)||(23216862-23216958)
chr6 (852-935)||(20207190-20207273)
chr6 (852-935)||(22101213-22101296)
chr6 (839-941)||(30522093-30522195)
chr6 (427-484)||(29136409-29136466)
chr6 (427-527)||(21375240-21375340)
chr6 (179-226)||(29144657-29144704)
chr6 (855-912)||(13214195-13214252)
chr6 (418-523)||(25320185-25320290)
chr6 (418-523)||(26149878-26149983)
chr6 (179-223)||(29012262-29012306)
chr6 (177-225)||(29130682-29130730)
chr6 (854-941)||(29389192-29389278)
chr6 (851-942)||(32826710-32826801)
chr6 (437-487)||(2742756-2742806)
chr6 (183-221)||(34279157-34279195)
chr6 (418-523)||(13339136-13339241)
[»] chr5 (17 HSPs)
chr5 (839-941)||(35323597-35323699)
chr5 (839-938)||(21039236-21039335)
chr5 (843-942)||(31859712-31859811)
chr5 (423-514)||(40548366-40548457)
chr5 (854-940)||(17223062-17223148)
chr5 (418-523)||(42777087-42777192)
chr5 (431-523)||(42405805-42405897)
chr5 (862-941)||(13271486-13271565)
chr5 (433-514)||(31788623-31788704)
chr5 (433-514)||(37512003-37512084)
chr5 (433-514)||(40544233-40544314)
chr5 (454-526)||(32642005-32642077)
chr5 (838-912)||(18401235-18401310)
chr5 (841-939)||(14872588-14872686)
chr5 (453-519)||(39725456-39725522)
chr5 (862-915)||(8217125-8217178)
chr5 (854-895)||(28503275-28503315)
[»] scaffold0134 (1 HSPs)
scaffold0134 (428-521)||(17144-17237)
[»] chr8 (8 HSPs)
chr8 (843-915)||(44173167-44173239)
chr8 (839-916)||(9045697-9045774)
chr8 (839-941)||(27157688-27157790)
chr8 (386-513)||(31135828-31135955)
chr8 (851-941)||(39039698-39039788)
chr8 (862-915)||(39555878-39555931)
chr8 (854-933)||(37507539-37507617)
chr8 (854-909)||(40899651-40899706)
[»] chr7 (8 HSPs)
chr7 (841-939)||(40256804-40256902)
chr7 (418-502)||(42445421-42445505)
chr7 (135-226)||(42445694-42445785)
chr7 (851-940)||(44453593-44453682)
chr7 (839-941)||(2391578-2391680)
chr7 (854-940)||(22713451-22713536)
chr7 (862-928)||(31459414-31459480)
chr7 (854-915)||(3255158-3255219)
[»] chr3 (9 HSPs)
chr3 (852-941)||(7925337-7925426)
chr3 (839-933)||(25123224-25123318)
chr3 (842-939)||(33513396-33513492)
chr3 (839-939)||(36692887-36692987)
chr3 (851-939)||(23771674-23771764)
chr3 (871-937)||(26665523-26665589)
chr3 (839-894)||(36679272-36679327)
chr3 (839-913)||(32808564-32808638)
chr3 (839-907)||(14338928-14338994)
[»] chr1 (6 HSPs)
chr1 (851-939)||(7439097-7439185)
chr1 (851-933)||(31577996-31578077)
chr1 (839-941)||(31767924-31768027)
chr1 (854-942)||(38091249-38091337)
chr1 (847-924)||(32556519-32556596)
chr1 (854-941)||(51906955-51907044)
[»] chr2 (9 HSPs)
chr2 (454-520)||(7436173-7436239)
chr2 (435-520)||(7524980-7525065)
chr2 (841-940)||(37267707-37267806)
chr2 (839-939)||(5867900-5867999)
chr2 (840-936)||(24166791-24166887)
chr2 (839-925)||(10696366-10696452)
chr2 (840-904)||(45203216-45203280)
chr2 (854-905)||(13378426-13378477)
chr2 (854-939)||(43050109-43050193)
[»] scaffold0054 (2 HSPs)
scaffold0054 (418-511)||(34343-34436)
scaffold0054 (418-511)||(40700-40793)
[»] scaffold0129 (1 HSPs)
scaffold0129 (458-513)||(9564-9619)


Alignment Details
Target: chr4 (Bit Score: 696; Significance: 0; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 696; E-Value: 0
Query Start/End: Original strand, 20 - 747
Target Start/End: Original strand, 9603041 - 9603768
Alignment:
Q  20 gtcgtaaccaaatccatgaagataagacatatgacttatgctaacaaaatccttaacatcttcaacagacgactcaactaacttatccgtagtgggaacg 119  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9603041 gtcgtaaccaaatccatgaagataagacgtatgaattatgctaacaaaatccttaacatcttcaacagacgactcaactaacttatccgtagtgggaacg 9603140  T
Q  120 agcttgatttcctgtgtagatgggttccacaatacagtattgcaataataataagcttgatagagacaaaatgtcccattaatactaccaaaaccaaaaa 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9603141 agcttgatttcctgtgtagatgggttccacaatacagtattgcaataataataagcttgatagagacaaaatgtcccattaatactaccaaaaccaaaaa 9603240  T
Q  220 tacgaaatttaaaacggtttgcatcatatgaatttgggaaatctattttaactttgttctcaaacctttcaccagaaatagaatagaaaacgtcttgacc 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9603241 tacgaaatttaaaacggtttgcatcatatgaatttgggaaatctattttaactttgttctcaaacctttcaccagaaatagaatagaaaacgtcttgacc 9603340  T
Q  320 aagtttgaaatcccttaggaggagagatgtcccgtcgtaataaggacatcgatgagaattaaacaagagattgttgcagaatgtgttcataaaactacgg 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9603341 aagtttgaaatcccttaggaggagagatgtcccgtcgtaataaggacatcgatgagaattaaataagagattgttgcagaatgtgttcataaaactacgg 9603440  T
Q  420 ttatcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggta 519  Q
    || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9603441 ttctcagataagagagaccatggtttacaaaagcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggta 9603540  T
Q  520 tataggtggtgctaaccttttcattctttacagccaccgactccattgcaggttgcaaatcggaatgcaatgagatcttgaaagcgcaaagtgattagta 619  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9603541 tataggtggtgctacccttttcgttctttacagccaccgactccattgcaggttgcaaatcggaatgcaatgagatcttgaaagcgcaaagtgattagta 9603640  T
Q  620 gaaaccctaaacaatttttgagcgagtttgtggatgaatggagaaaccctaacatcttttatatattgagaaaggggcccttcaaacccttctgttttcc 719  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9603641 gaaaccctaaacaacttttgagcgagtttgtggatgaatggagaaaccctaacatcttttatatattgagaaaggggcccttcaaacccttctgttttcc 9603740  T
Q  720 attttctttttgccacaaaagccctcca 747  Q
    ||||||||||||||||||||||||||||    
T  9603741 attttctttttgccacaaaagccctcca 9603768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 20 - 615
Target Start/End: Original strand, 9594238 - 9594833
Alignment:
Q  20 gtcgtaaccaaatccatgaagataagacatatgacttatgctaacaaaatccttaacatcttcaacagacgactcaactaacttatccgtagtgggaacg 119  Q
    ||||||||||||||||||||||||| |  ||| | ||||||||||||||| || ||||| |  || | ||||||||||||||  || || ||||||||||    
T  9594238 gtcgtaaccaaatccatgaagataatatctatcatttatgctaacaaaatgctcaacatttggaataaacgactcaactaacacatacggagtgggaacg 9594337  T
Q  120 agcttgatttcctgtgtagatgggttccacaatacagtattgcaataataataagcttgatagagacaaaatgtcccattaatactaccaaaaccaaaaa 219  Q
    ||||||||  | |||||||||||||||||||||||||| || | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  9594338 agcttgatcacgtgtgtagatgggttccacaatacagtgtttccataataataatcttgatagagacaaaatgtcccattaatactaccaaaaccaaaaa 9594437  T
Q  220 tacgaaa---tttaaaacggtttgcatcatatgaatttgggaaatctattttaactttgttctcaaacctttcaccagaaatagaatagaaaacgtcttg 316  Q
    |||||||   ||| ||||||||||   |||||| ||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||     
T  9594438 tacgaaattttttgaaacggtttg---catatggatttgagaaatctaatttaacattgttctcaaacctttcaccagaaatagaatagaaaacgtcttt 9594534  T
Q  317 accaagtttgaaatcccttaggaggagagatgtcccgtcgtaataaggacatcgatgagaattaaacaagagattgttgcagaatgtgttcataaaacta 416  Q
    |||||||| ||||||| |||| || ||||||  ||||||||||||||||||||| ||||||||| | ||||||||||||| |||  ||||||| ||   |    
T  9594535 accaagttcgaaatcctttagaagcagagatcccccgtcgtaataaggacatcggtgagaattagataagagattgttgcggaacatgttcatgaagtga 9594634  T
Q  417 cggttatcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcag 516  Q
      ||| ||| ||||||||||||||| ||| | ||| ||||||||||||||||||||||||| ||| ||||| |||||||||||||||| |||||||||||    
T  9594635 tcgttttcacataagagagaccatgctttgcgaacacattcaaatcgcttaaaagatttaataggtaatttagatagaatggagaaggaaatatcatcag 9594734  T
Q  517 gtatataggtggtgctaaccttttcattctttacagccaccgactccattgcaggttgcaaatcggaatgcaatgagatcttgaaagcgcaaagtgatt 615  Q
     ||||||||||||||| ||||||   || ||| | ||||| ||||||||    ||||| |||| ||||||||||||||| |||||||||||||||||||    
T  9594735 ctatataggtggtgctcacctttctcttttttgcggccactgactccatgagcggttgtaaattggaatgcaatgagatattgaaagcgcaaagtgatt 9594833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 20 - 700
Target Start/End: Original strand, 9582445 - 9583136
Alignment:
Q  20 gtcgtaaccaaatccatgaagataagacatatgacttatgctaacaaaatccttaacatcttcaacagacgactcaactaacttatccgtagtgggaacg 119  Q
    |||||| |||||||||||||||||| || ||| |  ||||||||||||||||  ||||||||||| ||||||||||||||||| ||||  | ||||||||    
T  9582445 gtcgtagccaaatccatgaagataatacgtatcatgtatgctaacaaaatccacaacatcttcaatagacgactcaactaactcatcctgactgggaacg 9582544  T
Q  120 agcttgatttcctgtgtagatgggttccacaatacagtattgcaataataataagcttgatagagacaaaatgtcccattaatactaccaaaaccaaaaa 219  Q
    ||||||||| | ||||  |||||||||||||||| ||| |||| |||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||    
T  9582545 agcttgattgcatgtgccgatgggttccacaatagagttttgccataataataatcttgatagagacaaaatgtgccattaatactaccaaagccaaaaa 9582644  T
Q  220 tacgaaatttaaaacggtttgcatcatatgaatttgggaaatctattttaactttgttctcaaacctttcaccagaaatagaatagaaaacgtcttgacc 319  Q
    |||||||||| ||||||| ||   |||||| ||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  9582645 tacgaaatttgaaacggtctg---catatgcatttgagaaatctaattgaactttgttctcaaacctttcaccagaaatagaatagaaaacgtctttacc 9582741  T
Q  320 aagtttgaaatcccttaggaggagagatgtcccgtcgtaataaggacatcgatgagaattaaacaagagattgttgcagaatgtgttcataaaactacgg 419  Q
    ||||| ||||||||||||||| ||||||  ||| ||||||||||||||| | ||||||||| | || ||||| ||| ||||  ||||||| ||   | ||    
T  9582742 aagttcgaaatcccttaggagcagagatcccccatcgtaataaggacattggtgagaattagataaaagattcttgtagaacatgttcatgaagtgaggg 9582841  T
Q  420 ttatcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggta 519  Q
    || ||||||||||||||||||| ||| | || ||||||||| || ||||  ||||||| |||||||||||||| ||| ||||||||||| ||||||||||    
T  9582842 ttttcagataagagagaccatgctttgcgaatgcattcaaaccgtttaatggatttaaaaggcaatttggataaaatagagaaggcaatttcatcaggta 9582941  T
Q  520 tataggtggtgctaaccttttcattcttta-cagccaccgactccattgcaggttgcaaatcggaatgcaatgagatcttgaaagcgcaaagtgatt--- 615  Q
    ||||||||||||| ||| |||| || |||| |||| || |||||||| |  |||||||||| |||||||| ||||||| ||||||| ||||||||||       
T  9582942 tataggtggtgctcacc-tttctttttttagcagcgactgactccatcggcggttgcaaattggaatgcagtgagatcctgaaagcacaaagtgattggg 9583040  T
Q  616 ----------agtagaaaccctaaacaatttttgagcgagtttgtggatgaatggagaaaccctaac-atcttttatatattgagaaaggggccct 700  Q
              || ||||||||||||||| ||| |||||||| |||||||||||  |||||||||| |  | ||||||||||||||||||| |||||    
T  9583041 attactagaaagcagaaaccctaaacaaatttggagcgagtctgtggatgaatatagaaaccctagcgcttttttatatattgagaaaggagccct 9583136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 20 - 700
Target Start/End: Original strand, 9588140 - 9588831
Alignment:
Q  20 gtcgtaaccaaatccatgaagataagacatatgacttatgctaacaaaatccttaacatcttcaacagacgactcaactaacttatccgtagtgggaacg 119  Q
    |||||| |||||||||||||||||| || ||| |  ||||||||||||||||  ||||||||||| ||||||||||||||||| ||||  | ||||||||    
T  9588140 gtcgtagccaaatccatgaagataatacgtatcatgtatgctaacaaaatccacaacatcttcaatagacgactcaactaactcatcctgactgggaacg 9588239  T
Q  120 agcttgatttcctgtgtagatgggttccacaatacagtattgcaataataataagcttgatagagacaaaatgtcccattaatactaccaaaaccaaaaa 219  Q
    ||||||||| | ||||  |||||||||||||||| ||| |||| |||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||    
T  9588240 agcttgattgcatgtgccgatgggttccacaatagagttttgccataataataatcttgatagagacaaaatgtgccattaatactaccaaagccaaaaa 9588339  T
Q  220 tacgaaatttaaaacggtttgcatcatatgaatttgggaaatctattttaactttgttctcaaacctttcaccagaaatagaatagaaaacgtcttgacc 319  Q
    |||||||||| ||||||| ||   |||||| ||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  9588340 tacgaaatttgaaacggtctg---catatgcatttgagaaatctaattgaactttgttctcaaacctttcaccagaaatagaatagaaaacgtctttacc 9588436  T
Q  320 aagtttgaaatcccttaggaggagagatgtcccgtcgtaataaggacatcgatgagaattaaacaagagattgttgcagaatgtgttcataaaactacgg 419  Q
    ||||| ||||||||||||||| ||||||  ||| ||||||||||||||| | ||||||||| | || ||||| ||| ||||  ||||||| ||   | ||    
T  9588437 aagttcgaaatcccttaggagcagagatcccccatcgtaataaggacattggtgagaattagataaaagattcttgtagaacatgttcatgaagtgaggg 9588536  T
Q  420 ttatcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggta 519  Q
    || ||||||||||||||||||| ||| | || ||||||||| || ||||  ||||||| |||||||||||||| ||| ||||||||||| ||||||||||    
T  9588537 ttttcagataagagagaccatgctttgcgaatgcattcaaaccgtttaatggatttaaaaggcaatttggataaaatagagaaggcaatttcatcaggta 9588636  T
Q  520 tataggtggtgctaaccttttcattcttta-cagccaccgactccattgcaggttgcaaatcggaatgcaatgagatcttgaaagcgcaaagtgatt--- 615  Q
    ||||||||||||| ||| |||| || |||| |||| || |||||||| |  |||||||||| |||||||| ||||||| ||||||| ||||||||||       
T  9588637 tataggtggtgctcacc-tttctttttttagcagcgactgactccatcggcggttgcaaattggaatgcagtgagatcctgaaagcacaaagtgattggg 9588735  T
Q  616 ----------agtagaaaccctaaacaatttttgagcgagtttgtggatgaatggagaaaccctaac-atcttttatatattgagaaaggggccct 700  Q
              || ||||||||||||||| ||| |||||||| |||||||||||  |||||||||| |  | ||||||||||||||||||| |||||    
T  9588736 attactagaaagcagaaaccctaaacaaatttggagcgagtctgtggatgaatatagaaaccctagcgcttttttatatattgagaaaggagccct 9588831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 21 - 539
Target Start/End: Complemental strand, 9568806 - 9568282
Alignment:
Q  21 tcgtaaccaaatccatgaagataagacatatgacttatgctaacaaaatccttaacatct---tcaacagacgactcaactaacttatccgtagt---gg 114  Q
    ||||||||||||||||||||||||||  ||| |  ||| ||| ||||||| | |||||||   |||| ||||||||||||||||| ||  | |||   ||    
T  9568806 tcgtaaccaaatccatgaagataagatgtatcatctatactatcaaaatcttcaacatcttcgtcaatagacgactcaactaactcatatggagtggggg 9568707  T
Q  115 gaacgagcttgatttcctgtgtagatgggttccacaatacagtattgcaataataataagcttgatagagacaaaatgtcccattaatactaccaaaacc 214  Q
    ||| |||||||||| | |||||||||||||||||||||| ||| |||| || ||||| | |||||| |||||||| ||| ||||||||||||||||||||    
T  9568706 gaatgagcttgattgcatgtgtagatgggttccacaatagagttttgccattataatcatcttgatggagacaaagtgtgccattaatactaccaaaacc 9568607  T
Q  215 aaaaatacgaaatttaaaacggtttgcatcatatgaatttgggaaatctattttaactttgttctcaaacctttcaccagaaatagaatagaaaacgtct 314  Q
    |||||||||||| || ||||||||||   || ||| ||||| |||||||| ||  |||||||||||||||||||||||| |||||||||||||||| |||    
T  9568606 aaaaatacgaaaattgaaacggtttg---caaatggatttgtgaaatctaattgtactttgttctcaaacctttcaccataaatagaatagaaaacttct 9568510  T
Q  315 tgaccaagtttgaaatcccttaggaggagagatgtcccgtcgtaataaggacatcgatgagaattaaacaagagattgttgcagaatgtgttcataaaac 414  Q
    | ||||||||  |||||| |||| || |||||||  || |||||||||||| |||  ||||||||| | || ||||| ||| ||||  ||||||| ||      
T  9568509 ttaccaagttctaaatcctttagaagaagagatgctccatcgtaataaggatatctgtgagaattagataaaagattcttgtagaacatgttcatgaagt 9568410  T
Q  415 tacggttatcagataag---agagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatc 511  Q
     | |||| |||||||||   |||||||||| ||||| |||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||    
T  9568409 gagggttttcagataagatcagagaccatgatttacgaacgcattcaaatcgcttaatagatttaaaaggcaatttggatagaatagagaaggcaatatc 9568310  T
Q  512 atcaggtatataggtggtgctaaccttt 539  Q
    ||||| |||| |||| ||||| ||||||    
T  9568309 atcagatatacaggttgtgctcaccttt 9568282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 172; E-Value: 7e-92
Query Start/End: Original strand, 797 - 996
Target Start/End: Original strand, 9603823 - 9604022
Alignment:
Q  797 catcctattagtttctcaagcgtctatgtagttcagattttagcataaaaacctcataaaacctccaaaaatacgttgaaatattccagattttagaatc 896  Q
    |||||||| ||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||     
T  9603823 catcctatgagtttctcaagcgtctatgtagttcggattttagaataaaaaccccataaaacctccaaaaatacgttaaaatatttcagattttagaatt 9603922  T
Q  897 tgaataggacgcgcgagaaggtcatagggtgggaaaaataatggctaatttcatggatgactatcaatgaaagagtacaaaatcttatatcgacaatatt 996  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9603923 tgaataggacgcgcgagaaggtcatagggtgggaaaaataatggctaatttcatggatgactatcaatgaaagagtacaaaatcttatatcgacaatatt 9604022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 145; E-Value: 9e-76
Query Start/End: Original strand, 138 - 539
Target Start/End: Complemental strand, 9573816 - 9573428
Alignment:
Q  138 gatgggttccacaatacagtattgcaataataataagcttgatagagacaaaatgtcccattaatactaccaaaaccaaaaatacgaaatttaaaacggt 237  Q
    |||||||||||| ||| ||| |||| |||||||  | |||||| |||||||||||| |||||||||||||||||||||||||||||||| || |||||||    
T  9573816 gatgggttccacgatagagttttgccataataaccaccttgatggagacaaaatgtgccattaatactaccaaaaccaaaaatacgaaacttgaaacggt 9573717  T
Q  238 ttgcatcatatgaatttgggaaatctattttaactttgttctcaaacctttcaccagaaatagaatagaaaacgtcttgaccaagtttgaaatcccttag 337  Q
    |||   ||| || ||||| ||||||||  || | |||| ||||||||||||||||| ||||||||||||||||||||| ||||||||  |||||| ||||    
T  9573716 ttg---catgtggatttgagaaatctaactttaatttgatctcaaacctttcaccataaatagaatagaaaacgtctttaccaagttcaaaatcctttag 9573620  T
Q  338 gaggagagatgtcccgtcgtaa-taaggacatcgatgagaattaaacaagagattgttgcagaatgtgttcataaaactacggttatcagataagagaga 436  Q
    ||| | ||||| ||| |||||| |||||||||||             |||||||||||||| ||  ||||| ||||   | |||| |||  ||| |||||    
T  9573619 gagcaaagatgccccatcgtaattaaggacatcg------------taagagattgttgcaaaacatgttcttaaagtgatggttttcaattaacagaga 9573532  T
Q  437 ccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggc-aatatcatcaggtatataggtggtgctaac 535  Q
    ||||| ||| | ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||    
T  9573531 ccatgatttgcgaacacattcaaatcgcttaaaagatttaataggcaatttggatagaatggagaaggcaaatatcatcaggtatataggtggtgctcac 9573432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 429 - 525
Target Start/End: Original strand, 54295949 - 54296045
Alignment:
Q  429 aagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtatatagg 525  Q
    ||||||||||||| | ||| ||||||||||||||| ||||||||||||||||||| ||| |||| ||||||||||| ||||||||||||||||||||    
T  54295949 aagagagaccatgatctacgaacgcattcaaatcgtttaaaagatttaagaggcagttttgataaaatggagaaggaaatatcatcaggtatatagg 54296045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 135 - 387
Target Start/End: Original strand, 54295670 - 54295919
Alignment:
Q  135 gtagatgggttccacaatacagtattgcaataataataagcttgatagagacaaaatgtcccattaatactaccaaaaccaaaaatacgaaatttaaaac 234  Q
    |||||||| |||||||||||||| |||| |||||||| | | | || |||||||| | | ||||||| |||||||||||||| ||||  ||| | | ||     
T  54295670 gtagatggattccacaatacagttttgccataataatcatcctcatggagacaaattatgccattaacactaccaaaaccaagaataacaaaatcacaat 54295769  T
Q  235 ggtttgcatcatatgaatttgggaaatctattttaactttgttctcaaacctttcaccagaaatagaatagaaaacgtcttgaccaagtttgaaatccct 334  Q
    ||||||||    ||| |||||||||||||| ||||||||| || | ||||||||||||| |||| ||||||||| ||| || ||| | ||  ||||||||    
T  54295770 ggtttgcaa---atggatttgggaaatctaatttaactttattttgaaacctttcaccaaaaatggaatagaaatcgtttttaccgaattcaaaatccct 54295866  T
Q  335 taggaggagagatgtcccgtcgtaataaggacatcgatgagaattaaacaaga 387  Q
    ||| || | ||| |  |||| |||||||| | | || ||||||||||| ||||    
T  54295867 tagaagtaaagaagatccgttgtaataagaaaagcggtgagaattaaataaga 54295919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 453 - 526
Target Start/End: Complemental strand, 37895000 - 37894927
Alignment:
Q  453 cattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtatataggt 526  Q
    |||||||||||||| |||||||| ||||| | ||||||||||||||||||||||| ||| |||||||| |||||    
T  37895000 cattcaaatcgcttcaaagatttgagagggagtttggatagaatggagaaggcaacatcttcaggtatttaggt 37894927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 862 - 938
Target Start/End: Complemental strand, 30441444 - 30441368
Alignment:
Q  862 caaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaataat 938  Q
    ||||||||||||||||| || | ||||||||||||| ||||||  || ||||||| |||||||||||||||| ||||    
T  30441444 caaaaatacgttgaaatgtttcggattttagaatctaaatagggtgcacgagaagctcatagggtgggaaaagtaat 30441368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 839 - 902
Target Start/End: Original strand, 782390 - 782453
Alignment:
Q  839 gcataaaaacctcataaaacctccaaaaatacgttgaaatattccagattttagaatctgaata 902  Q
    ||||||||||||||||||| ||||||||| | ||||||||||| | |||||||||||| |||||    
T  782390 gcataaaaacctcataaaatctccaaaaaaaagttgaaatatttcggattttagaatccgaata 782453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 839 - 939
Target Start/End: Original strand, 7257305 - 7257405
Alignment:
Q  839 gcataaaaacctcataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaataat 938  Q
    |||||||| |||||||||||||||||||| | ||||||||||    |||||||||||  ||||||| |  |||||||  ||||||||||| |||| ||||    
T  7257305 gcataaaatcctcataaaacctccaaaaacatgttgaaatatcttggattttagaatacgaatagggcatgcgagaacctcatagggtggaaaaagtaat 7257404  T
Q  939 g 939  Q
    |    
T  7257405 g 7257405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 885 - 940
Target Start/End: Complemental strand, 10156820 - 10156765
Alignment:
Q  885 gattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaataatgg 940  Q
    ||||||||||||||||||||  |||||||||| ||||||  |||||||||||||||    
T  10156820 gattttagaatctgaatagggtgcgcgagaagctcatagaatgggaaaaataatgg 10156765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 839 - 895
Target Start/End: Complemental strand, 3664286 - 3664230
Alignment:
Q  839 gcataaaaacctcataaaacctccaaaaatacgttgaaatattccagattttagaat 895  Q
    ||||||||| |||||||||||| |||||| ||||| ||||||| | |||||||||||    
T  3664286 gcataaaaatctcataaaacctacaaaaacacgttaaaatatttcggattttagaat 3664230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 839 - 901
Target Start/End: Original strand, 55301174 - 55301235
Alignment:
Q  839 gcataaaaacctcataaaacctccaaaaatacgttgaaatattccagattttagaatctgaat 901  Q
    ||||||||| ||||||||| ||| ||||| |||||||||||||   |||||||||||||||||    
T  55301174 gcataaaaatctcataaaatctctaaaaacacgttgaaatatt-tggattttagaatctgaat 55301235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 1e-31; HSPs: 33)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 423 - 529
Target Start/End: Original strand, 32745744 - 32745850
Alignment:
Q  423 tcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtatat 522  Q
    ||||||||||||||||||| ||| | ||||||||||||||| ||||||||||||||||| | ||| ||||| ||||||||||||||||||||||||||||    
T  32745744 tcagataagagagaccatgatttgcgaacgcattcaaatcgtttaaaagatttaagaggtagttttgataggatggagaaggcaatatcatcaggtatat 32745843  T
Q  523 aggtggt 529  Q
    || ||||    
T  32745844 agttggt 32745850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 418 - 544
Target Start/End: Original strand, 32973513 - 32973639
Alignment:
Q  418 ggttatcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcagg 517  Q
    |||| ||||||||||||||||||| ||||||||| |||||||| ||||| |||||||||||||||||||| ||||||||  |||||| ||| |||||||     
T  32973513 ggttttcagataagagagaccatgatttacaaacacattcaaaacgcttgaaagatttaagaggcaattttgatagaatatagaaggaaatttcatcaga 32973612  T
Q  518 tatataggtggtgctaaccttttcatt 544  Q
     ||||| |||||||| |||||||||||    
T  32973613 aatatatgtggtgctcaccttttcatt 32973639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 423 - 526
Target Start/End: Complemental strand, 29123320 - 29123217
Alignment:
Q  423 tcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtatat 522  Q
    ||||| ||||||||||||| ||| | |||| |||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  29123320 tcagacaagagagaccatgatttgcgaacggattcaactcgtttaaaagatttaagaggcaattttgatagaatggagaaggcaatatcatcagatatat 29123221  T
Q  523 aggt 526  Q
    ||||    
T  29123220 aggt 29123217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 427 - 524
Target Start/End: Complemental strand, 29144456 - 29144359
Alignment:
Q  427 ataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtatatag 524  Q
    |||||||| |||| | ||||| ||||||| |||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||  ||||||||    
T  29144456 ataagagataccaagatttacgaacgcatccaaatcgcttcaaagatttaagaggcaatttcgatagaatggataaggcaatatcatcgagtatatag 29144359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 423 - 523
Target Start/End: Original strand, 34279400 - 34279500
Alignment:
Q  423 tcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtatat 522  Q
    |||||||| ||| |||||| ||||||||| |||||||| | ||| |||||||||||||| ||||| || ||||||||||||||||||||||||| |||||    
T  34279400 tcagataaaagataccatgatttacaaacacattcaaaactcttgaaagatttaagaggtaattttgaaagaatggagaaggcaatatcatcagatatat 34279499  T
Q  523 a 523  Q
    |    
T  34279500 a 34279500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 429 - 524
Target Start/End: Complemental strand, 29130487 - 29130392
Alignment:
Q  429 aagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtatatag 524  Q
    ||||||||||||| ||||| |||| ||||||||||||| ||||||||||||||||| || || ||||||||||||  |||||||| ||||||||||    
T  29130487 aagagagaccatgatttacgaacggattcaaatcgcttgaaagatttaagaggcaactttgagagaatggagaagtgaatatcatgaggtatatag 29130392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 423 - 514
Target Start/End: Original strand, 29149753 - 29149844
Alignment:
Q  423 tcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatc 514  Q
    ||||| ||||||||||||| ||| | ||||||||||||||  ||||||||||||||||||||||| || |||||||||||||| ||||||||    
T  29149753 tcagacaagagagaccatgatttgcgaacgcattcaaatcagttaaaagatttaagaggcaattttgagagaatggagaaggctatatcatc 29149844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 423 - 545
Target Start/End: Original strand, 29152965 - 29153087
Alignment:
Q  423 tcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtatat 522  Q
    ||||||| ||| ||||||| ||| | ||| ||||||||  |||| |||||||||||||||||||| || ||||||||||||||||||||||||| ||| |    
T  29152965 tcagataggagggaccatgatttgcgaacacattcaaaatgcttgaaagatttaagaggcaattttgagagaatggagaaggcaatatcatcagatatgt 29153064  T
Q  523 aggtggtgctaaccttttcattc 545  Q
    | |  ||||| ||||||||||||    
T  29153065 atgctgtgctcaccttttcattc 29153087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 427 - 523
Target Start/End: Original strand, 34259145 - 34259241
Alignment:
Q  427 ataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtatata 523  Q
    ||||||||||||||| ||||| ||||||| |||||||||| ||||| |||||||| | ||||  |||||| |||||||||||||||| |||||||||    
T  34259145 ataagagagaccatgatttacgaacgcatccaaatcgctttaaagacttaagaggtagtttgtgtagaatagagaaggcaatatcatgaggtatata 34259241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 797 - 939
Target Start/End: Complemental strand, 7591196 - 7591053
Alignment:
Q  797 catcctattagtttctcaagcgtc-tatgtagttcagattttagcataaaaacctcataaaacctccaaaaatacgttgaaatattccagattttagaat 895  Q
    |||||||| || |||||||||||| |||| ||||  |||||||| ||   |||  ||||||||||| ||||| ||||||||||||| | |||||||||||    
T  7591196 catcctatgagcttctcaagcgtcctatgcagtttggattttagaatccgaactgcataaaacctcaaaaaacacgttgaaatatttcggattttagaat 7591097  T
Q  896 ctgaataggacgcgcgagaaggtcatagggtgggaaaaataatg 939  Q
    || ||||||||||||| |||  ||||||| |||||||| |||||    
T  7591096 cttaataggacgcgcgggaaattcataggatgggaaaagtaatg 7591053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 839 - 921
Target Start/End: Complemental strand, 989583 - 989501
Alignment:
Q  839 gcataaaaacctcataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcat 921  Q
    |||||||| || ||||||| ||||||||| ||||||||||||| ||||||||||| |||||||||| || |||||||| ||||    
T  989583 gcataaaacccccataaaatctccaaaaacacgttgaaatatttcagattttagattctgaatagggcgtgcgagaagctcat 989501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 427 - 524
Target Start/End: Original strand, 21379332 - 21379429
Alignment:
Q  427 ataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtatatag 524  Q
    ||||||||||||||| |||||  |||||| |||||||||| |||||||||||||| || || |||||||| |||||| | ||||||||| ||| ||||    
T  21379332 ataagagagaccatgatttacggacgcatccaaatcgcttcaaagatttaagaggtaacttcgatagaatagagaagactatatcatcatgtaaatag 21379429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 456 - 541
Target Start/End: Complemental strand, 34281106 - 34281021
Alignment:
Q  456 tcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtatataggtggtgctaaccttttc 541  Q
    ||||| ||||| |||||||||||||||||||| || ||||| ||||||||||||||||||| ||| || | |||||| ||||||||    
T  34281106 tcaaaacgcttgaaagatttaagaggcaattttgagagaatagagaaggcaatatcatcagatatgtatgcggtgctcaccttttc 34281021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 839 - 938
Target Start/End: Original strand, 6978498 - 6978598
Alignment:
Q  839 gcataaaaacctcataaaacctccaaaaat-acgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaataa 937  Q
    ||||||||||  |||||||||||||||||| |||||||||||||  |||||||||||||  |||||||||| ||||||  ||||||| ||| |||| |||    
T  6978498 gcataaaaactccataaaacctccaaaaattacgttgaaatattttagattttagaatccaaataggacgcacgagaaactcataggatggaaaaagtaa 6978597  T
Q  938 t 938  Q
    |    
T  6978598 t 6978598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 429 - 516
Target Start/End: Complemental strand, 29299237 - 29299150
Alignment:
Q  429 aagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcag 516  Q
    ||||||||||||| ||| | ||| |||||||| ||||||||||||||||||||||| || || |||||||| || || ||||||||||    
T  29299237 aagagagaccatgatttgcgaacacattcaaaacgcttaaaagatttaagaggcaactttgagagaatggaaaaagctatatcatcag 29299150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 840 - 924
Target Start/End: Complemental strand, 33450900 - 33450815
Alignment:
Q  840 cataaaaacctcataaaa-cctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagg 924  Q
    |||||| ||||| ||||| |||||||||| ||||||||||||| |  ||||||||||| ||||||||||||| ||||| |||||||    
T  33450900 cataaacacctcctaaaagcctccaaaaacacgttgaaatatttcgaattttagaatccgaataggacgcgcaagaagctcatagg 33450815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 428 - 524
Target Start/End: Original strand, 23216862 - 23216958
Alignment:
Q  428 taagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtatatag 524  Q
    |||||||||||||| ||| | ||| |||||||||| ||| |||||||||||||| || || ||||||||||| |||   ||||| ||||||||||||    
T  23216862 taagagagaccatgatttgcgaacacattcaaatctcttcaaagatttaagaggtaacttcgatagaatggataagcttatatcgtcaggtatatag 23216958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 852 - 935
Target Start/End: Original strand, 20207190 - 20207273
Alignment:
Q  852 ataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaat 935  Q
    |||||| || |||||| ||||||||||||| ||||||||||||||||||||||||  ||||||   |||||| ||| |||||||    
T  20207190 ataaaaacttcaaaaacacgttgaaatatttcagattttagaatctgaataggacatgcgagatattcatagagtgagaaaaat 20207273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 852 - 935
Target Start/End: Original strand, 22101213 - 22101296
Alignment:
Q  852 ataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaat 935  Q
    |||||| || |||||| ||||||||||||| ||||||||||||||||||||||||  ||||||   |||||| ||| |||||||    
T  22101213 ataaaaacttcaaaaacacgttgaaatatttcagattttagaatctgaataggacatgcgagatattcatagagtgagaaaaat 22101296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 839 - 941
Target Start/End: Original strand, 30522093 - 30522195
Alignment:
Q  839 gcataaaaacctcataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaataat 938  Q
    ||||||||||||||||||||||||||||| ||||  ||| ||| | |||||| ||||| ||||||| | | | ||||  ||||| |||||||||| ||||    
T  30522093 gcataaaaacctcataaaacctccaaaaacacgtaaaaacatttcggattttggaatccgaatagggcacacaagaacctcataaggtgggaaaagtaat 30522192  T
Q  939 ggc 941  Q
    |||    
T  30522193 ggc 30522195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 427 - 484
Target Start/End: Complemental strand, 29136466 - 29136409
Alignment:
Q  427 ataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaa 484  Q
    ||||||||||||||| ||| |||||||||||||  ||||| |||||||||||||||||    
T  29136466 ataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaa 29136409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 427 - 527
Target Start/End: Original strand, 21375240 - 21375340
Alignment:
Q  427 ataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtatataggt 526  Q
    ||||||| ||||||| |||| | |||||| |||||| ||| |||||||||||||  ||||| |||||||| ||||||   ||||||||| ||| ||||||    
T  21375240 ataagagggaccatgatttatagacgcatccaaatcacttcaaagatttaagagataatttcgatagaatagagaagagtatatcatcatgtaaataggt 21375339  T
Q  527 g 527  Q
    |    
T  21375340 g 21375340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 29144704 - 29144657
Alignment:
Q  179 atagagacaaaatgtcccattaatactaccaaaaccaaaaatacgaaa 226  Q
    ||||||||||| | | ||||||||||||||||||||||||||||||||    
T  29144704 atagagacaaagtataccattaatactaccaaaaccaaaaatacgaaa 29144657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 855 - 912
Target Start/End: Original strand, 13214195 - 13214252
Alignment:
Q  855 aaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcga 912  Q
    ||||||| ||||| ||||||||||||| | ||||||| ||||||||||||| ||||||    
T  13214195 aaacctctaaaaacacgttgaaatatttcggattttaaaatctgaataggatgcgcga 13214252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 418 - 523
Target Start/End: Original strand, 25320185 - 25320290
Alignment:
Q  418 ggttatcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcagg 517  Q
    |||| ||| ||||||| ||||||| ||| | ||  |||| ||||||||||||||||||||| ||||| || |||||||| || | ||| |||||||| |     
T  25320185 ggttctcaaataagagggaccatgattttcgaatacattgaaatcgcttaaaagatttaagcggcaactttgatagaattgaaacggctatatcatctga 25320284  T
Q  518 tatata 523  Q
    ||||||    
T  25320285 tatata 25320290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 418 - 523
Target Start/End: Original strand, 26149878 - 26149983
Alignment:
Q  418 ggttatcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcagg 517  Q
    |||| ||| ||||||| ||||||| ||| | ||  |||| ||||||||||||||||||||| ||||| || |||||||| || | ||| |||||||| |     
T  26149878 ggttctcaaataagagggaccatgattttcgaatacattgaaatcgcttaaaagatttaagcggcaactttgatagaattgaaacggctatatcatctga 26149977  T
Q  518 tatata 523  Q
    ||||||    
T  26149978 tatata 26149983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 29012306 - 29012262
Alignment:
Q  179 atagagacaaaatgtcccattaatactaccaaaaccaaaaatacg 223  Q
    ||||||||||| ||| || ||||||||||||||||||||||||||    
T  29012306 atagagacaaagtgtgccgttaatactaccaaaaccaaaaatacg 29012262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 29130730 - 29130682
Alignment:
Q  177 tgatagagacaaaatgtcccattaatactaccaaaaccaaaaatacgaa 225  Q
    |||| |||||||||||| |||||||||||||| |||||||| |||||||    
T  29130730 tgatggagacaaaatgtgccattaatactaccgaaaccaaagatacgaa 29130682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 854 - 941
Target Start/End: Original strand, 29389192 - 29389278
Alignment:
Q  854 aaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaataatggc 941  Q
    ||||||| |||||| ||||||||| ||| | ||||||| |||||||||||| || |||||||  | ||||||||| |||| |||||||    
T  29389192 aaaaccttcaaaaacacgttgaaacatttcggattttaaaatctgaatagggcgtgcgagaa-attatagggtggaaaaagtaatggc 29389278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 851 - 942
Target Start/End: Original strand, 32826710 - 32826801
Alignment:
Q  851 cataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaataatggct 942  Q
    |||||||||||||||||  ||||||||||||  | ||||||||||   ||||| |||||||||||  ||||||  ||| |||| ||||||||    
T  32826710 cataaaacctccaaaaactcgttgaaatatttaaaattttagaattcaaatagaacgcgcgagaaactcatagaatggaaaaagtaatggct 32826801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 437 - 487
Target Start/End: Original strand, 2742756 - 2742806
Alignment:
Q  437 ccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaattt 487  Q
    ||||| |||||| |||||| |||||||||| |||||||| |||||||||||    
T  2742756 ccatgatttacatacgcatccaaatcgctttaaagattttagaggcaattt 2742806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 34279157 - 34279195
Alignment:
Q  183 agacaaaatgtcccattaatactaccaaaaccaaaaata 221  Q
    ||||||| |||||||||||||||||||||||| ||||||    
T  34279157 agacaaagtgtcccattaatactaccaaaacccaaaata 34279195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 418 - 523
Target Start/End: Complemental strand, 13339241 - 13339136
Alignment:
Q  418 ggttatcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcagg 517  Q
    |||| ||| ||||||| ||||||| ||| | |||||||  |||||| |  |||||||||||||| | |||||||||||| | ||||| ||| ||||| |     
T  13339241 ggttttcaaataagagtgaccatgatttgcgaacgcatcgaaatcggtacaaagatttaagaggaagtttggatagaatcgtgaaggaaatgtcatctga 13339142  T
Q  518 tatata 523  Q
    ||||||    
T  13339141 tatata 13339136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 2e-24; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 839 - 941
Target Start/End: Complemental strand, 35323699 - 35323597
Alignment:
Q  839 gcataaaaacctcataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaataat 938  Q
    |||||||||||   |||||||| |||||||||||||||||||| | |||||||||||||||||||||||| ||||||  ||||| |||||||||| ||||    
T  35323699 gcataaaaaccctgtaaaaccttcaaaaatacgttgaaatatttcggattttagaatctgaataggacgcacgagaatctcataaggtgggaaaagtaat 35323600  T
Q  939 ggc 941  Q
    |||    
T  35323599 ggc 35323597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 839 - 938
Target Start/End: Complemental strand, 21039335 - 21039236
Alignment:
Q  839 gcataaaaacctcataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaataat 938  Q
    |||||||||||||| |||||||||||| | ||   |||||||| | ||||||| |||||||||||||||| ||||||  |  ||||||||||||||||||    
T  21039335 gcataaaaacctcaaaaaacctccaaacacacaaagaaatatttcggattttaaaatctgaataggacgcacgagaaacttgtagggtgggaaaaataat 21039236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 843 - 942
Target Start/End: Complemental strand, 31859811 - 31859712
Alignment:
Q  843 aaaaacctcataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaataatggct 942  Q
    ||||||| ||||||| ||||||||||| |||| |||||| | ||||||||| || ||||||| ||| ||||||| ||||| | ||| |||| ||||||||    
T  31859811 aaaaaccccataaaatctccaaaaataagttggaatatttcggattttagagtccgaatagggcgcacgagaagctcataagatggcaaaagtaatggct 31859712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 423 - 514
Target Start/End: Complemental strand, 40548457 - 40548366
Alignment:
Q  423 tcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatc 514  Q
    ||||||| | ||||||||| |||||  | ||||||||||||||| |||||||||| ||| | |||  |||||||||| ||||||||||||||    
T  40548457 tcagataggtgagaccatgatttacttatgcattcaaatcgcttcaaagatttaacaggaagtttttatagaatggaaaaggcaatatcatc 40548366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 854 - 940
Target Start/End: Complemental strand, 17223148 - 17223062
Alignment:
Q  854 aaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaataatgg 940  Q
    ||||||| |||||| ||||||||||||| ||||||||||||||| |||| | |||| |||||  ||||  |||||||||| ||||||    
T  17223148 aaaacctgcaaaaacacgttgaaatatttcagattttagaatctaaataaggcgcgtgagaaactcatcaggtgggaaaagtaatgg 17223062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 418 - 523
Target Start/End: Complemental strand, 42777192 - 42777087
Alignment:
Q  418 ggttatcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcagg 517  Q
    |||||||| ||||||||||||||| ||| || || ||||||||||| ||    ||||||| ||| ||||| || ||||| ||||| |||||||||||| |    
T  42777192 ggttatcaaataagagagaccatgatttgcacacacattcaaatcgtttggttgatttaataggtaattttgagagaatagagaaagcaatatcatcatg 42777093  T
Q  518 tatata 523  Q
    ||||||    
T  42777092 tatata 42777087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 431 - 523
Target Start/End: Complemental strand, 42405897 - 42405805
Alignment:
Q  431 gagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtatata 523  Q
    |||| |||||| |||||  |||| |||||||||||| |||||||||| ||||| ||| || | ||| || |||||||||||||| ||||||||    
T  42405897 gagataccatgatttacgtacgctttcaaatcgctttaaagatttaacaggcagtttcgacataatagataaggcaatatcatctggtatata 42405805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 862 - 941
Target Start/End: Original strand, 13271486 - 13271565
Alignment:
Q  862 caaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaataatggc 941  Q
    |||||| ||||||||||||| |||||||||||||   |||||||||||||||||  | ||| ||||| |||| |||||||    
T  13271486 caaaaacacgttgaaatatttcagattttagaattcaaataggacgcgcgagaaactaatatggtggaaaaagtaatggc 13271565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 433 - 514
Target Start/End: Complemental strand, 31788704 - 31788623
Alignment:
Q  433 gagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatc 514  Q
    ||||||||| ||| |  |||||||||||||| || ||||||||||  || | ||| |||||||| |||||||||||||||||    
T  31788704 gagaccatgatttgcgtacgcattcaaatcgtttcaaagatttaatggggagttttgatagaatagagaaggcaatatcatc 31788623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 433 - 514
Target Start/End: Complemental strand, 37512084 - 37512003
Alignment:
Q  433 gagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatc 514  Q
    ||||||||| ||| || ||  |||||||||| || |||||||| ||||||| ||| |||| ||||||||||||||| |||||    
T  37512084 gagaccatgatttgcatacatattcaaatcgtttcaaagatttgagaggcagttttgataaaatggagaaggcaatgtcatc 37512003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 433 - 514
Target Start/End: Complemental strand, 40544314 - 40544233
Alignment:
Q  433 gagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatc 514  Q
    ||||||||| ||| |  |||||||||||||| || |||||||||| ||| | ||| |||||||| |||||||||| ||||||    
T  40544314 gagaccatgattttcttacgcattcaaatcgtttcaaagatttaatagggagttttgatagaatagagaaggcaacatcatc 40544233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 454 - 526
Target Start/End: Complemental strand, 32642077 - 32642005
Alignment:
Q  454 attcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtatataggt 526  Q
    |||||||| |||  |||||||||||||| ||||| |||||||| || |||| |||||||||  ||||||||||    
T  32642077 attcaaattgctacaaagatttaagaggtaattttgatagaattgaaaaggtaatatcatcgtgtatataggt 32642005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 838 - 912
Target Start/End: Complemental strand, 18401310 - 18401235
Alignment:
Q  838 agcataaaaacctcataaa-acctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcga 912  Q
    |||||||| |||||||| | ||||||||||| ||||||||| ||| |||||| || ||||||||||| || |||||    
T  18401310 agcataaacacctcatacagacctccaaaaacacgttgaaacatttcagattctataatctgaatagaacacgcga 18401235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 841 - 939
Target Start/End: Complemental strand, 14872686 - 14872588
Alignment:
Q  841 ataaaaacctcataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaataatg 939  Q
    |||||||||  |||||||||| ||||| |||||||||||||   ||||||||||| | || ||  ||| ||||||  | |||||||||||||| |||||    
T  14872686 ataaaaaccctataaaacctctaaaaacacgttgaaatattttggattttagaatttaaacagagcgcacgagaacctaatagggtgggaaaagtaatg 14872588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 453 - 519
Target Start/End: Original strand, 39725456 - 39725522
Alignment:
Q  453 cattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggta 519  Q
    |||||||||||||| |||||||| | ||| | ||| || ||||| |||||| |||||||||||||||    
T  39725456 cattcaaatcgcttcaaagatttgaaaggaagttttgacagaatagagaagacaatatcatcaggta 39725522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 862 - 915
Target Start/End: Complemental strand, 8217178 - 8217125
Alignment:
Q  862 caaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaa 915  Q
    |||||| ||||| ||| ||| ||||||||||||| |||||||| ||||||||||    
T  8217178 caaaaacacgttaaaacatttcagattttagaatttgaatagggcgcgcgagaa 8217125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 854 - 895
Target Start/End: Original strand, 28503275 - 28503315
Alignment:
Q  854 aaaacctccaaaaatacgttgaaatattccagattttagaat 895  Q
    ||||||||||||| |||||||||||||| |||||||||||||    
T  28503275 aaaacctccaaaa-tacgttgaaatatttcagattttagaat 28503315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 54; Significance: 2e-21; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 428 - 521
Target Start/End: Original strand, 17144 - 17237
Alignment:
Q  428 taagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtata 521  Q
    |||||||||||||| ||| |||||||||||||||| ||| ||||||||||||||||| || ||||||||||| |||  |||||| |||||||||    
T  17144 taagagagaccatgatttgcaaacgcattcaaatctcttcaaagatttaagaggcaactttgatagaatggataagctaatatcgtcaggtata 17237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 7e-21; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 843 - 915
Target Start/End: Complemental strand, 44173239 - 44173167
Alignment:
Q  843 aaaaacctcataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaa 915  Q
    |||||| |||||||| ||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||    
T  44173239 aaaaacttcataaaatctccaaaaatacgttgaaatatttctgattttagaatctgaatagggcgcgcgagaa 44173167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 839 - 916
Target Start/End: Original strand, 9045697 - 9045774
Alignment:
Q  839 gcataaaaacctcataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaag 916  Q
    ||||||||||  ||||||||||||||||| ||||||||||||| ||||||||  ||||||||||||||| || |||||    
T  9045697 gcataaaaactccataaaacctccaaaaacacgttgaaatatttcagatttttaaatctgaataggacgtgcaagaag 9045774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 839 - 941
Target Start/End: Original strand, 27157688 - 27157790
Alignment:
Q  839 gcataaaaacctcataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaataat 938  Q
    ||||||| ||| ||||||| ||||||||  ||||||||||| | | |||||||||||| |||||| |||| ||||||  ||||||||||| |||| ||||    
T  27157688 gcataaataccccataaaatctccaaaaccacgttgaaataattcggattttagaatccgaatagcacgcacgagaaactcatagggtggaaaaagtaat 27157787  T
Q  939 ggc 941  Q
    |||    
T  27157788 ggc 27157790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 386 - 513
Target Start/End: Original strand, 31135828 - 31135955
Alignment:
Q  386 gagattgttgcagaatgtgttcataaaactacggttatcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaat 485  Q
    ||||||||||| |||  ||||||||||| || |||| ||| |||| |||||||||||||| || || ||| |||||||||| ||  |||| | ||||||     
T  31135828 gagattgttgcggaacatgttcataaaaatagggttttcaaataaaagagaccatggtttgcatacacatgcaaatcgcttcaagaattttaaaggcaac 31135927  T
Q  486 ttggatagaatggagaaggcaatatcat 513  Q
    ||||| | ||| ||||||| ||||||||    
T  31135928 ttggagataatagagaaggaaatatcat 31135955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 851 - 941
Target Start/End: Complemental strand, 39039788 - 39039698
Alignment:
Q  851 cataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaataatggc 941  Q
    |||||||| || ||||| |||||||||| || | ||||||||||||| |||||||||||| ||||| | ||||| ||  ||||||||||||    
T  39039788 cataaaacttctaaaaacacgttgaaatgtttcggattttagaatctaaataggacgcgcaagaagcttataggatgaaaaaaataatggc 39039698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 862 - 915
Target Start/End: Complemental strand, 39555931 - 39555878
Alignment:
Q  862 caaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaa 915  Q
    |||||| ||||||||| ||| ||||||||| |||||||| ||||||||||||||    
T  39555931 caaaaacacgttgaaacatttcagattttaaaatctgaacaggacgcgcgagaa 39555878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 854 - 933
Target Start/End: Complemental strand, 37507617 - 37507539
Alignment:
Q  854 aaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaa 933  Q
    |||||||||||||  ||||||||| ||| | |||||||||||  ||||||| ||||| ||||  ||||||||||||||||    
T  37507617 aaaacctccaaaac-acgttgaaacatttcggattttagaattcgaatagggcgcgcaagaaactcatagggtgggaaaa 37507539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 854 - 909
Target Start/End: Complemental strand, 40899706 - 40899651
Alignment:
Q  854 aaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcg 909  Q
    ||||||| |||||| ||||| ||||||| ||||||||| |||||||||||| ||||    
T  40899706 aaaaccttcaaaaacacgttaaaatatttcagattttaaaatctgaatagggcgcg 40899651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 1e-19; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 841 - 939
Target Start/End: Complemental strand, 40256902 - 40256804
Alignment:
Q  841 ataaaaacctcataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaataatg 939  Q
    ||||||||| ||||||||||||||||| |||||| |||||| ||||||||| |||| ||||| | ||||||| ||  |||||||||| |||||||||||    
T  40256902 ataaaaaccacataaaacctccaaaaacacgttgcaatatttcagattttaaaatccgaataaggcgcgcgaaaaactcatagggtgagaaaaataatg 40256804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 418 - 502
Target Start/End: Complemental strand, 42445505 - 42445421
Alignment:
Q  418 ggttatcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaa 502  Q
    |||| |||||||||||||||||   ||||| ||| ||||||||||||||||||||||||||||| ||||| |||| |||||||||    
T  42445505 ggttttcagataagagagaccacaatttacgaacacattcaaatcgcttaaaagatttaagaggtaattttgatataatggagaa 42445421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 226
Target Start/End: Complemental strand, 42445785 - 42445694
Alignment:
Q  135 gtagatgggttccacaatacagtattgcaataataataagcttgatagagacaaaatgtcccattaatactaccaaaaccaaaaatacgaaa 226  Q
    |||||||| |||||||||||| | |||| ||||| || |  || || |||||| | ||| ||||||||||||||||||||||||||||||||    
T  42445785 gtagatggattccacaatacaattttgccataattatcatattcatggagacagagtgtgccattaatactaccaaaaccaaaaatacgaaa 42445694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 851 - 940
Target Start/End: Complemental strand, 44453682 - 44453593
Alignment:
Q  851 cataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaataatgg 940  Q
    |||||||| |||||||| ||||||||||||| |  ||||||||||| ||||||||||  ||||||  | ||||||||  |||| ||||||    
T  44453682 cataaaacttccaaaaacacgttgaaatatttcgaattttagaatccgaataggacgtacgagaaacttatagggtgaaaaaagtaatgg 44453593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 839 - 941
Target Start/End: Complemental strand, 2391680 - 2391578
Alignment:
Q  839 gcataaaaacctcataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaataat 938  Q
    ||||||||||| || || ||||  ||||||| ||||||||||| | ||||||||||||  |||||  ||||||||||  ||||||| ||  |||| ||||    
T  2391680 gcataaaaaccccacaagaccttaaaaaatatgttgaaatatttcggattttagaatccaaatagtgcgcgcgagaaactcataggatgaaaaaagtaat 2391581  T
Q  939 ggc 941  Q
    |||    
T  2391580 ggc 2391578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 854 - 940
Target Start/End: Original strand, 22713451 - 22713536
Alignment:
Q  854 aaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaataatgg 940  Q
    |||||||||||||| ||||||||||||| ||||||||| |||   |||||| ||| ||||||  ||||| ||||| |||| ||||||    
T  22713451 aaaacctccaaaaacacgttgaaatatttcagattttaaaattcaaatagg-cgcacgagaaactcataaggtggaaaaagtaatgg 22713536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 862 - 928
Target Start/End: Complemental strand, 31459480 - 31459414
Alignment:
Q  862 caaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgg 928  Q
    |||||||||||||||||||| | ||||||| ||| |||||||||| | ||||||  | |||||||||    
T  31459480 caaaaatacgttgaaatatttcggattttaaaatttgaataggacacacgagaaacttatagggtgg 31459414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 854 - 915
Target Start/End: Original strand, 3255158 - 3255219
Alignment:
Q  854 aaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaa 915  Q
    ||||||| ||||||||  ||||||||||  ||||||||||||| ||||||  ||||||||||    
T  3255158 aaaaccttcaaaaatatattgaaatattttagattttagaatccgaatagagcgcgcgagaa 3255219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 4e-19; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 852 - 941
Target Start/End: Complemental strand, 7925426 - 7925337
Alignment:
Q  852 ataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaataatggc 941  Q
    |||||||||  ||||||||||||||||||| ||||||||||||||| |||||||| || |||||  ||||||||||| |||| |||||||    
T  7925426 ataaaaccttaaaaaatacgttgaaatatttcagattttagaatctaaataggacacgtgagaaattcatagggtggaaaaagtaatggc 7925337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 839 - 933
Target Start/End: Complemental strand, 25123318 - 25123224
Alignment:
Q  839 gcataaaaacctcataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaa 933  Q
    |||||||||||  ||||||||||||||||  |||| |||||||   |||||||||||||||||||| ||||||| ||  ||||| ||||| ||||    
T  25123318 gcataaaaaccctataaaacctccaaaaacgcgttaaaatattttggattttagaatctgaatagggcgcgcgaaaaactcatatggtggaaaaa 25123224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 842 - 939
Target Start/End: Original strand, 33513396 - 33513492
Alignment:
Q  842 taaaaacctcataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaataatg 939  Q
    |||||||| |||||||||||| |||| |||||||||||||   |||||||||||| |||||||  || | ||||  ||||||||||| ||||||||||    
T  33513396 taaaaacc-cataaaacctccgaaaacacgttgaaatatttaggattttagaatccgaatagggtgcacaagaaactcatagggtggaaaaaataatg 33513492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 839 - 939
Target Start/End: Original strand, 36692887 - 36692987
Alignment:
Q  839 gcataaaaacctcataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaataat 938  Q
    ||||||||||||| ||||| || ||||||||| |||||||||| ||||||||||||    |||||  ||||||||||| ||||| | || ||||| ||||    
T  36692887 gcataaaaacctcgtaaaaacttcaaaaatacattgaaatatttcagattttagaactcaaatagagcgcgcgagaagctcatatgatgagaaaagtaat 36692986  T
Q  939 g 939  Q
    |    
T  36692987 g 36692987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 851 - 939
Target Start/End: Complemental strand, 23771764 - 23771674
Alignment:
Q  851 cataaaacctccaaaaatac--gttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaataatg 939  Q
    ||||||||||||||||| ||  |||||||||||  |||||||||||||  |||||  ||||||| ||| |||||||||| ||||| |||||    
T  23771764 cataaaacctccaaaaaaacatgttgaaatatttaagattttagaatccaaatagagcgcgcgataagctcatagggtgcgaaaagtaatg 23771674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 871 - 937
Target Start/End: Original strand, 26665523 - 26665589
Alignment:
Q  871 gttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaataa 937  Q
    ||||||||||| | ||||||| ||||  |||||||||||||||||  ||||||| ||||||||||||    
T  26665523 gttgaaatatttcggattttaaaatccaaataggacgcgcgagaaactcataggatgggaaaaataa 26665589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 839 - 894
Target Start/End: Original strand, 36679272 - 36679327
Alignment:
Q  839 gcataaaaacctcataaaacctccaaaaatacgttgaaatattccagattttagaa 894  Q
    ||||||||||||| ||||| || |||||| || |||||||||| ||||||||||||    
T  36679272 gcataaaaacctcgtaaaaacttcaaaaaaacattgaaatatttcagattttagaa 36679327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 839 - 913
Target Start/End: Complemental strand, 32808638 - 32808564
Alignment:
Q  839 gcataaaaacctcataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgag 913  Q
    ||||||||| |||||||||||||||||||||  || ||| |||   ||||||| |||| |||||| |||||||||    
T  32808638 gcataaaaatctcataaaacctccaaaaataaattaaaaaattttggattttaaaatccgaatagaacgcgcgag 32808564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 839 - 907
Target Start/End: Complemental strand, 14338994 - 14338928
Alignment:
Q  839 gcataaaaacctcataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacg 907  Q
    ||||||| |||| ||||||||||  |||| |||||||||||||   ||||| |||||||||||||||||    
T  14338994 gcataaataccttataaaacctc--aaaacacgttgaaatattttggatttaagaatctgaataggacg 14338928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 2e-18; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 851 - 939
Target Start/End: Original strand, 7439097 - 7439185
Alignment:
Q  851 cataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaataatg 939  Q
    |||||||||| |||||| |||||||||||||  |||||||||||| |||||||||||||||||||  ||||||| || ||||| |||||    
T  7439097 cataaaaccttcaaaaacacgttgaaatattttagattttagaatttgaataggacgcgcgagaatctcataggatgagaaaagtaatg 7439185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 851 - 933
Target Start/End: Original strand, 31577996 - 31578077
Alignment:
Q  851 cataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaa 933  Q
    ||||||||||||||||| ||||||||||||| | ||||||||||||  |||||| ||||||||||| ||||| ||||||||||    
T  31577996 cataaaacctccaaaaacacgttgaaatatttcggattttagaatccaaatagggcgcgcgagaagctcata-ggtgggaaaa 31578077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 839 - 941
Target Start/End: Original strand, 31767924 - 31768027
Alignment:
Q  839 gcataaaaacctcataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcata-gggtgggaaaaataa 937  Q
    |||||||||||||||||||| | |||||| ||||||||||||| | ||||||| ||||  |||||| |||| ||||||  |||| ||||||||||| |||    
T  31767924 gcataaaaacctcataaaactttcaaaaacacgttgaaatatttcggattttaaaatccaaatagggcgcgtgagaagcgcataggggtgggaaaagtaa 31768023  T
Q  938 tggc 941  Q
    ||||    
T  31768024 tggc 31768027  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 854 - 942
Target Start/End: Original strand, 38091249 - 38091337
Alignment:
Q  854 aaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaataatggct 942  Q
    ||||||| ||| || ||| ||||||||| |  |||||||||||||||||||||||||||||| |||| ||| || ||||| ||||||||    
T  38091249 aaaaccttcaataacacggtgaaatatttcgaattttagaatctgaataggacgcgcgagaacgtcacaggatgtgaaaagtaatggct 38091337  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 847 - 924
Target Start/End: Original strand, 32556519 - 32556596
Alignment:
Q  847 acctcat-aaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagg 924  Q
    ||||||| ||||||||| ||||||||||  |||||| ||||||||| |||| |||||||||| |||||||  |||||||    
T  32556519 acctcataaaaacctcc-aaaatacgttacaatatttcagattttaaaatccgaataggacgtgcgagaaactcatagg 32556596  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 854 - 941
Target Start/End: Original strand, 51906955 - 51907044
Alignment:
Q  854 aaaacctccaaaaat-acgttgaaatattccagattttagaatctgaataggacgcgc-gagaaggtcatagggtgggaaaaataatggc 941  Q
    ||||||||||||||  | ||||||||||| | ||||||||||||| || ||| || || |||||| |||| ||||||||||| |||||||    
T  51906955 aaaacctccaaaaaacatgttgaaatatttcggattttagaatctaaacagggcgtgctgagaagctcatcgggtgggaaaagtaatggc 51907044  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 454 - 520
Target Start/End: Original strand, 7436173 - 7436239
Alignment:
Q  454 attcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtat 520  Q
    ||||||||||||| ||||||||||||||||| || |||||||||||||  |||| ||||||||||||    
T  7436173 attcaaatcgcttcaaagatttaagaggcaaatttgatagaatggagattgcaacatcatcaggtat 7436239  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 435 - 520
Target Start/End: Original strand, 7524980 - 7525065
Alignment:
Q  435 gaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcatcaggtat 520  Q
    |||||||||||| | ||  ||||||||||||  |||||||||||||||||||| ||||||||||| || |||| ||| ||||||||    
T  7524980 gaccatggtttagatacagattcaaatcgctgcaaagatttaagaggcaattttgatagaatggaaaatgcaacatcgtcaggtat 7525065  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 841 - 940
Target Start/End: Complemental strand, 37267806 - 37267707
Alignment:
Q  841 ataaaaacctcataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaataatgg 940  Q
    ||||||| |||||||||||||| |||| ||||| ||||||| | ||||||||||||  |||||| | | ||||||| ||||| ||||| |||| ||||||    
T  37267806 ataaaaatctcataaaacctcccaaaacacgttaaaatatttcggattttagaatccaaatagggcacacgagaagctcataaggtggaaaaagtaatgg 37267707  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 839 - 939
Target Start/End: Complemental strand, 5867999 - 5867900
Alignment:
Q  839 gcataaaaacctcataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaataat 938  Q
    |||||||| || ||||||| ||||||||| ||||||||||||| ||||||||| |||| ||||||  | ||||||||| | |||||| || |||| ||||    
T  5867999 gcataaaacccacataaaatctccaaaaacacgttgaaatatttcagattttaaaatc-gaatagagcacgcgagaagcttatagggcggaaaaagtaat 5867901  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 840 - 936
Target Start/End: Complemental strand, 24166887 - 24166791
Alignment:
Q  840 cataaaaacctcataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaata 936  Q
    |||||||||  ||||||||||| ||||| | ||||||||||| |  |||| |||||| ||||||| |||| |||||  ||||||||||| |||||||    
T  24166887 cataaaaactccataaaacctctaaaaacatgttgaaatatttcgaatttaagaatccgaatagggcgcgtgagaaactcatagggtggaaaaaata 24166791  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 839 - 925
Target Start/End: Original strand, 10696366 - 10696452
Alignment:
Q  839 gcataaaaacctcataaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcataggg 925  Q
    ||||||||||| | |||||||| ||||||||||||||||||||   |||||||||||  ||||||   |||||||||  ||||||||    
T  10696366 gcataaaaaccccgtaaaaccttcaaaaatacgttgaaatattttggattttagaattcgaatagagtgcgcgagaacttcataggg 10696452  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 840 - 904
Target Start/End: Complemental strand, 45203280 - 45203216
Alignment:
Q  840 cataaaaacctcataaaacctccaaaaatacgttgaaatattccagattttagaatctgaatagg 904  Q
    |||||||| | ||||||||||| ||||| || |||||||||| | |||||||||||| |||||||    
T  45203280 cataaaaatcccataaaacctcgaaaaacacattgaaatatttcggattttagaatccgaatagg 45203216  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 854 - 905
Target Start/End: Original strand, 13378426 - 13378477
Alignment:
Q  854 aaaacctccaaaaatacgttgaaatattccagattttagaatctgaatagga 905  Q
    |||||||||||||| || |||||||||| ||||||||| |||| ||||||||    
T  13378426 aaaacctccaaaaacacattgaaatatttcagattttataatccgaatagga 13378477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 854 - 939
Target Start/End: Complemental strand, 43050193 - 43050109
Alignment:
Q  854 aaaacctccaaaaatacgttgaaatattccagattttagaatctgaataggacgcgcgagaaggtcatagggtgggaaaaataatg 939  Q
    |||||||||||||  ||||||||| ||| ||||||||| |||| ||||| | || || ||||  |||||||||||||||| |||||    
T  43050193 aaaacctccaaaac-acgttgaaacatttcagattttaaaatccgaataaggcgtgcaagaaactcatagggtgggaaaagtaatg 43050109  T

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Target: scaffold0054 (Bit Score: 38; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 418 - 511
Target Start/End: Original strand, 34343 - 34436
Alignment:
Q  418 ggttatcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatc 511  Q
    |||| ||| ||||||| ||||||| ||||| |||||||  |||||| || |||||||||||||| | |||||||||||| | ||||| ||||||    
T  34343 ggttttcaaataagagtgaccatgatttacgaacgcatcgaaatcggttcaaagatttaagagggagtttggatagaattgtgaaggaaatatc 34436  T

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Target: scaffold0054; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 418 - 511
Target Start/End: Original strand, 40700 - 40793
Alignment:
Q  418 ggttatcagataagagagaccatggtttacaaacgcattcaaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatc 511  Q
    |||| ||| ||||||| ||||||| ||||| |||||||  |||||| || ||||||| |||||| | |||||||||||| | ||||| ||||||    
T  40700 ggttttcaaataagagtgaccatgatttacgaacgcatcgaaatcggttcaaagattgaagagggagtttggatagaatcgtgaaggaaatatc 40793  T

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Target: scaffold0129 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 458 - 513
Target Start/End: Complemental strand, 9619 - 9564
Alignment:
Q  458 aaatcgcttaaaagatttaagaggcaatttggatagaatggagaaggcaatatcat 513  Q
    |||||| || ||||||||||||||||||||||| |||||||| || ||||| ||||    
T  9619 aaatcgtttcaaagatttaagaggcaatttggagagaatggaaaatgcaatgtcat 9564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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