View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17056_low_11 (Length: 305)
Name: NF17056_low_11
Description: NF17056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17056_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 42654242 - 42654526
Alignment:
| Q |
1 |
aaaagatgataaatatccctatagttaaatcaggttttaataaaggagctactaatactatgcagtgaatactttcttaatagagatcatatcaatgtag |
100 |
Q |
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| T |
42654242 |
aaaagatgataaatatccctataattaaatcaggttttaatcaaggagctactaatactatgcagtgaatactttcttaatagagatcatatcaatgtag |
42654341 |
T |
|
| Q |
101 |
aacttcaaaacaaattgttatggaaaattggtttggccatagaaccatcccaaaatcgtaacatgaataacttacaatataaaccaaccaaatgatcaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
42654342 |
aacttcaaaacaaattgttatggaaaattggtttggccatagaaccatcccaaaatcgtaacatgagtaacttacaatataaaccaaccaaatgatcaag |
42654441 |
T |
|
| Q |
201 |
aatacaaatgcatttaagccaataatcggtggtttttctctacatatatatatgttaaagcatttattcaatctacaacaaatacac |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
42654442 |
aatacaaatgcatttaagccaataatcggtggtttttctctac--atatatatgttaaagcatttattcaatctacaacaaatacac |
42654526 |
T |
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