View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17056_low_13 (Length: 266)
Name: NF17056_low_13
Description: NF17056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17056_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 256
Target Start/End: Original strand, 31794532 - 31794779
Alignment:
| Q |
19 |
ggggtcctagtaatccagagttcggtcaagaggtaagtaactaagtatagcctggccaagaactgttc-acctaggaatcgaactcgggttttccaaacg |
117 |
Q |
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| T |
31794532 |
ggggtcctagtaatccagagctcggtcaagaggtaagtaactaagtatagcctggccaagaactgttccacctagaaatcaaactcgggttttccaaacg |
31794631 |
T |
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| Q |
118 |
ataatacctatgatgttttaggttatgcaatttagaaaattaacttatctgagctagtcacta---------agaatttttgtgagtgaagataaaaaga |
208 |
Q |
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| T |
31794632 |
ataatacctatgatgttttaggttatgcaatttagaaaattaacttatctgcgctagtcactaagaaactctagaatttttgtgagtgaagataaaaaga |
31794731 |
T |
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| Q |
209 |
actattataagcataattgactctacatttgaattggtcaatcctttg |
256 |
Q |
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| T |
31794732 |
actattataagcataattgactctacatttgaattggtcaatcctttg |
31794779 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 57
Target Start/End: Complemental strand, 11368532 - 11368503
Alignment:
| Q |
28 |
gtaatccagagttcggtcaagaggtaagta |
57 |
Q |
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| T |
11368532 |
gtaatccagagttcggtcaagaggtaagta |
11368503 |
T |
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