View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17056_low_15 (Length: 262)
Name: NF17056_low_15
Description: NF17056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17056_low_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 34964859 - 34964627
Alignment:
| Q |
18 |
agctgaacatgaaagaataatgaaagagataattaagaagttaccaagaacaacgggagcaagtgaaagccatagagtgatgggaattgattgtccaagt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
34964859 |
agctgaacatgaaagaataatgaaagagataattaagaagttaccaagaacaacgggagcaagtgagagccatagagtgatgggaattgattgtccaagt |
34964760 |
T |
|
| Q |
118 |
atgaattgtgaagcagcagcattaaagaatggctcaagagctgaaacatacaaatttaatttcaattat--cagttagaaattaaagtagatctccttcc |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
34964759 |
atgaattgtgaagcagcagcattaaagaatggctcaagagctgaaacatacaagtttaatttcaattatcacagttagaaattaaagtagatctccttcc |
34964660 |
T |
|
| Q |
216 |
atatctttatcataaagagtgttttatgtcacctttg |
252 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
34964659 |
atatctttatcataaa----gttttatgtcacctttg |
34964627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University