View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17056_low_18 (Length: 222)
Name: NF17056_low_18
Description: NF17056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17056_low_18 |
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| [»] scaffold0117 (2 HSPs) |
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Alignment Details
Target: scaffold0117 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: scaffold0117
Description:
Target: scaffold0117; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 14105 - 14254
Alignment:
| Q |
1 |
cttcatcaaattaaataaggcacaaatggaatagtaattgtgctaaccaatcatgatatgttccaatcaatgtttgtcaaaagctcttgaatggaatggt |
100 |
Q |
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| T |
14105 |
cttcatcaaattaaacaaggcacaaatggaatagtaattgtgctaaccaatcatgatatgttccaatcaatgtttgtcaaaagctcttgaatggaatggt |
14204 |
T |
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| Q |
101 |
aattacctcttggaggctaagacaccaatcaatgcagaaacatgtgcttcatg |
153 |
Q |
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| T |
14205 |
a---acctcttggaggctaagacaccaatcaatgcaggaacatgtgcttcatg |
14254 |
T |
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Target: scaffold0117; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 128 - 204
Target Start/End: Original strand, 14351 - 14427
Alignment:
| Q |
128 |
atcaatgcagaaacatgtgcttcatgagtactgtttgatgaaaagtggtttagacgagcacacataatagcaacatc |
204 |
Q |
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| T |
14351 |
atcaatgcaggaacatgtgcttcatgagtactgtttgatgaaaagaagtttagacgagcacacataacagcaacatc |
14427 |
T |
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Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 45784852 - 45784919
Alignment:
| Q |
5 |
atcaaattaaataaggcacaaatggaatagta---attgtgctaaccaatcatgatatgttccaatca |
69 |
Q |
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| T |
45784852 |
atcaaattaaacaatgcacaaatggaatattattaattgtgctaaccaatcatgatatgttccaatca |
45784919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 142
Target Start/End: Original strand, 45785818 - 45785880
Alignment:
| Q |
77 |
tcaaaagctcttgaatggaatggtaattacctcttggaggctaagacaccaatcaatgcagaaaca |
142 |
Q |
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| T |
45785818 |
tcaaaagctcttgaagggaaaggtaa---cctcttggaagctaggacaccaatcaatgcaggaaca |
45785880 |
T |
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