View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17056_low_20 (Length: 216)
Name: NF17056_low_20
Description: NF17056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17056_low_20 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 1176281 - 1176088
Alignment:
| Q |
1 |
acagtgtgggagaaaagaagatcgccggcgatgtgacatttctagatctgaacagcttgaaaacaggcggcggtggttatgaggaaaaagaggtggcagt |
100 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||| || |
|
|
| T |
1176281 |
acagtgcgggagaaaagaagatcaccggcgatgtgacatttctggatctgaacagcttgaaaacaggcggcggtggttatgaggaagaagaggcggcggt |
1176182 |
T |
|
| Q |
101 |
gcggttgcaactttgaagagaagaggtggcgattctggtggtgttaaggtcggagaagggtgagaagatgacagagggttggaggcgcggagaa |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1176181 |
gcggttgcaactttgaagagaagaggtggcgattctggtggtgttagggtcggagaaaggtgagaagatgacagagggttggaggcgcgaagaa |
1176088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 55038779 - 55038962
Alignment:
| Q |
1 |
acagtgtgggagaaaagaagatcgccggcgatgtgacatttctagatctgaacagcttgaaaacaggcggcggtggttatgaggaaaaagaggtggcagt |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||| || |
|
|
| T |
55038779 |
acagtgcgggagaaaagaagatcgccggcgatgtgacatttctggatctgaacagcttgaaaacaggcggcggtggttatgaggaagaagaggcggcggt |
55038878 |
T |
|
| Q |
101 |
gcggttgcaactttgaagagaagaggtggcgattctggtggtgttaaggtcggagaagggtgagaagatgacagagggttggag |
184 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55038879 |
gtggttgcaactttgaagagaagaggtggcgattctggtggtgttagggtcggagaagggtgagaagatgacagagggttggag |
55038962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 5197256 - 5197063
Alignment:
| Q |
1 |
acagtgtgggagaaaagaagatcgccggcgatgtgacatttctagatctgaacagcttgaaaacaggcggcggtggttatgaggaaaaagaggtggcagt |
100 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||| || |
|
|
| T |
5197256 |
acagtgcgggagaaaagaagatcaccggcgatgtgacatttctggatctgaacagcttgaaaacaggcggcggtggttatgaggaagaagaggcggcggt |
5197157 |
T |
|
| Q |
101 |
gcggttgcaactttgaagagaagaggtggcgattctggtggtgttaaggtcggagaagggtgagaagatgacagagggttggaggcgcggagaa |
194 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5197156 |
gtggttgcaactttgaagagaagaggtggcgattctagtggtgttagggtcggagaaaggtgagaagatgacagagggttggaggcgcgaagaa |
5197063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 9 - 194
Target Start/End: Complemental strand, 8004448 - 8004264
Alignment:
| Q |
9 |
ggagaaaagaagatcgccggcgatgtgacatttctagatctgaacagcttgaaaacaggcggcggtggttatgaggaaaaagaggtggcagtgcggttgc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||| ||| ||| |||||| |
|
|
| T |
8004448 |
ggagaaaagaagatcgccggcgatgtgacatttccggatctgaacagcttgaaaacaggcggcagtggttatgaggaagaagaggcggcggtgtggttgc |
8004349 |
T |
|
| Q |
109 |
aactttgaagagaagaggtggcgattctggtggtgttaaggtcggagaagggtgagaagatgacagagggttggaggcgcggagaa |
194 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
8004348 |
aac-ttgaagagaagaggtggcgattctggtggtgttagggttggagaagggtgagaagatgacagagggttggaagcgcggagaa |
8004264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University