View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17056_low_3 (Length: 578)
Name: NF17056_low_3
Description: NF17056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17056_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 542; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 19 - 564
Target Start/End: Original strand, 42445346 - 42445891
Alignment:
| Q |
19 |
aatggagccccatggatgctcacagttggagcaagcactattgacagaaccattgtggcaacagcagtgcttggaaatggggaagaatttgagggcgaat |
118 |
Q |
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| T |
42445346 |
aatggagccccatggatgctcacagttggagcaagcactattgacagaaccattgtggcaacagcagtgcttggaaatggggaagaatttgagggcgaat |
42445445 |
T |
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| Q |
119 |
ctgttttccagccttccgatttctctccaacactgttgcccttagcatatgcaggaataaatggcaaagtagaatcttcattttgtgctaatggatcctt |
218 |
Q |
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| T |
42445446 |
ctgttttccagccttccgatttctctccaacactgttgcccttagcatatgcaggaataaatggcaaagtagaatcttcattttgtgctaatggatcctt |
42445545 |
T |
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| Q |
219 |
gagtgacattgacttcagaggaaaggttgttttgtgtgagaggggagggggtataggaagaattgccaaaggacaggaagtacaaagagcaggtggtgcc |
318 |
Q |
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| T |
42445546 |
gagtgacattgacttcagaggaaaggttgttttgtgtgagaggggagggggtataggaagaattgccaaaggacaggaagtacaaagagcaggtggtgcc |
42445645 |
T |
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| Q |
319 |
gccatgattctcatgaatgatgaactcaatggtttcagtctctcagctgatgtatatgtcctaccagcaacacatgtaagctatgctgctggactaaaga |
418 |
Q |
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| T |
42445646 |
gccatgattctcatgaatgatgaactcaatggtttcagtctctcagctgatgtacatgtcctaccagcaacacatgtaagctatgctgctggactaaaga |
42445745 |
T |
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| Q |
419 |
tcaaggcctacataaattccacttcaccgacagcaaccatttcgtttaagggaacgattatcgggaactccttagcgccatccgttgcatcattctcttc |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42445746 |
tcaaggcctacataaattccacttcaccgacagcaaccatttcgtttaagggaacgattatcgggaactccttagcgccatccgttgcatcattctcttc |
42445845 |
T |
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| Q |
519 |
aagaggtcccaacttgccgagtcctggtatattgaaaccggatatt |
564 |
Q |
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| T |
42445846 |
aagaggtcccaacttgccgagtcctggtatattgaaaccggatatt |
42445891 |
T |
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