View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17056_low_5 (Length: 466)
Name: NF17056_low_5
Description: NF17056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17056_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Original strand, 32125807 - 32126258
Alignment:
| Q |
1 |
tgacataaaaattcagcttttgactaaggggaagagtaatgtttagtgatgtagagtaagttgatgtttattagattatttgttttcaacgattaaagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
32125807 |
tgacataaaaattcagcttttgactaaggggaagagtaatgtttagtgatgtagagtaagttgatgttcattagattatttgttttcaacgattacagaa |
32125906 |
T |
|
| Q |
101 |
tttcatatatattacacaatggttttatatcaacccacatttggtgtttgttcttcattcattaaccattaacggtcacttaacgaaaaggataattgag |
200 |
Q |
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| T |
32125907 |
tttcatatatattacacaatggttttatatcaacccacatttggtgtttgttcttctttcattaaccattaacggtcacttaacgaaaaggataattgag |
32126006 |
T |
|
| Q |
201 |
aaatcaaatagttgaatgggtgaatagtttaaaaattattttagttggttttaatagc----ttatatgagctaaaattatgagatacttgaggttacat |
296 |
Q |
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||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| |
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| T |
32126007 |
aaatcaaatagttgaattggtgaaaagtttaaaaattattttagttggttttaatagcttaattatatgaactaaagttatgagatacttgaggttacat |
32126106 |
T |
|
| Q |
297 |
caaaccatactcattgtcaagccaaacataaacttcaaagttattaatgaagacaacattaactattcaaacttcaaagcactgagttgtcaaaaggcat |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32126107 |
caaaccatactcattgtcaagccaaacataaacttcaaagttattaatgaagacaacattaattattcaaacttcaaagcactgagttgtcaaaaggcat |
32126206 |
T |
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| Q |
397 |
ctaggcagtggaggtgaagttgaatcgaaaacaatcagtttgatgtgcaaag |
448 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32126207 |
ctaggcagtggaggtgaagttgaatcgaaaacaatcagtttgatgtgcaaag |
32126258 |
T |
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