View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17056_low_6 (Length: 454)

Name: NF17056_low_6
Description: NF17056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17056_low_6
NF17056_low_6
[»] chr8 (36 HSPs)
chr8 (267-435)||(33956277-33956444)
chr8 (125-265)||(8243393-8243536)
chr8 (146-264)||(35440995-35441116)
chr8 (146-266)||(5033150-5033273)
chr8 (12-99)||(33956156-33956243)
chr8 (146-265)||(33841617-33841739)
chr8 (146-262)||(45191153-45191272)
chr8 (146-264)||(10086748-10086869)
chr8 (125-213)||(34541808-34541896)
chr8 (146-265)||(39850954-39851067)
chr8 (146-268)||(8796409-8796534)
chr8 (146-258)||(5667094-5667209)
chr8 (125-258)||(34229638-34229774)
chr8 (188-265)||(2581815-2581895)
chr8 (195-269)||(22649831-22649908)
chr8 (147-225)||(4958632-4958709)
chr8 (165-258)||(6296611-6296698)
chr8 (125-182)||(6296610-6296667)
chr8 (126-182)||(39850961-39851017)
chr8 (185-256)||(43844534-43844608)
chr8 (196-258)||(5033237-5033302)
chr8 (325-379)||(10542671-10542724)
chr8 (146-195)||(35031640-35031689)
chr8 (146-182)||(5033187-5033223)
chr8 (146-182)||(22649871-22649907)
chr8 (146-197)||(31159912-31159963)
chr8 (196-258)||(33841588-33841653)
chr8 (131-182)||(34541879-34541930)
chr8 (196-258)||(35440966-35441031)
chr8 (196-265)||(5667173-5667245)
chr8 (324-373)||(16290893-16290942)
chr8 (315-396)||(18036799-18036880)
chr8 (325-381)||(24184744-24184800)
chr8 (146-182)||(33841667-33841703)
chr8 (146-182)||(35441045-35441081)
chr8 (127-195)||(37618735-37618802)
[»] chr7 (32 HSPs)
chr7 (121-268)||(34854696-34854846)
chr7 (125-267)||(41018233-41018378)
chr7 (146-265)||(11016859-11016981)
chr7 (121-265)||(29053315-29053453)
chr7 (121-263)||(45231855-45231996)
chr7 (146-267)||(15027530-15027654)
chr7 (146-267)||(38975793-38975917)
chr7 (146-263)||(4290537-4290657)
chr7 (143-225)||(7671934-7672016)
chr7 (146-225)||(48000770-48000849)
chr7 (125-249)||(27028798-27028925)
chr7 (121-225)||(10419491-10419595)
chr7 (146-262)||(42628297-42628407)
chr7 (132-256)||(4649328-4649448)
chr7 (326-397)||(2040072-2040143)
chr7 (128-179)||(42628303-42628354)
chr7 (173-237)||(22764753-22764820)
chr7 (146-195)||(48000720-48000769)
chr7 (126-182)||(29053390-29053446)
chr7 (315-421)||(980908-981014)
chr7 (196-265)||(48000684-48000756)
chr7 (196-258)||(42628371-42628436)
chr7 (128-182)||(4649328-4649382)
chr7 (202-258)||(48000819-48000878)
chr7 (196-258)||(4290621-4290686)
chr7 (196-258)||(11016945-11017010)
chr7 (169-222)||(30217503-30217556)
chr7 (146-179)||(41018307-41018340)
chr7 (159-220)||(41945893-41945954)
chr7 (226-263)||(48249557-48249594)
chr7 (146-182)||(11016895-11016931)
chr7 (191-258)||(27028725-27028795)
[»] chr1 (51 HSPs)
chr1 (146-267)||(29179623-29179747)
chr1 (124-267)||(37155034-37155181)
chr1 (146-265)||(48993943-48994065)
chr1 (146-265)||(5995359-5995481)
chr1 (125-267)||(48498403-48498547)
chr1 (128-268)||(34062205-34062339)
chr1 (143-265)||(44706806-44706932)
chr1 (120-267)||(8337852-8337992)
chr1 (125-264)||(46333951-46334084)
chr1 (125-258)||(9157307-9157443)
chr1 (147-258)||(17127591-17127705)
chr1 (125-218)||(741507-741600)
chr1 (159-258)||(1091583-1091685)
chr1 (126-225)||(38674511-38674608)
chr1 (126-244)||(4609007-4609128)
chr1 (146-266)||(49444939-49445051)
chr1 (146-258)||(32540774-32540889)
chr1 (137-204)||(1819506-1819573)
chr1 (146-225)||(29371401-29371480)
chr1 (170-259)||(36290457-36290549)
chr1 (128-225)||(48604955-48605052)
chr1 (125-200)||(28928784-28928859)
chr1 (159-248)||(45728294-45728386)
chr1 (194-265)||(46931987-46932061)
chr1 (146-258)||(15220817-15220923)
chr1 (132-221)||(47303432-47303521)
chr1 (126-182)||(8337927-8337983)
chr1 (126-182)||(49444987-49445043)
chr1 (187-256)||(28395636-28395708)
chr1 (146-220)||(33219611-33219685)
chr1 (122-191)||(2573157-2573226)
chr1 (182-258)||(21630039-21630118)
chr1 (126-182)||(46334022-46334078)
chr1 (132-191)||(19711192-19711251)
chr1 (128-179)||(34062217-34062268)
chr1 (125-180)||(48823890-48823945)
chr1 (122-213)||(5694892-5694982)
chr1 (196-258)||(5995445-5995510)
chr1 (196-258)||(48993914-48993979)
chr1 (196-256)||(15220887-15220950)
chr1 (196-248)||(32540755-32540810)
chr1 (146-182)||(48993993-48994029)
chr1 (322-372)||(10433235-10433285)
chr1 (128-182)||(38674579-38674633)
chr1 (125-182)||(47303400-47303457)
chr1 (122-154)||(17127677-17127709)
chr1 (146-182)||(21630068-21630104)
chr1 (146-182)||(28395663-28395699)
chr1 (146-182)||(29179673-29179709)
chr1 (226-258)||(33219682-33219714)
chr1 (226-258)||(49444910-49444942)
[»] chr4 (43 HSPs)
chr4 (146-265)||(23444295-23444417)
chr4 (146-264)||(51265436-51265557)
chr4 (146-267)||(6271690-6271814)
chr4 (125-266)||(47404590-47404725)
chr4 (146-265)||(42375009-42375122)
chr4 (146-241)||(47661856-47661954)
chr4 (125-265)||(31430466-31430597)
chr4 (125-208)||(50384110-50384193)
chr4 (170-263)||(30861824-30861920)
chr4 (125-258)||(55090001-55090128)
chr4 (125-225)||(40789212-40789312)
chr4 (137-258)||(52028555-52028670)
chr4 (146-258)||(35682163-35682278)
chr4 (125-208)||(24006075-24006158)
chr4 (143-258)||(26186039-26186155)
chr4 (146-265)||(53954609-53954722)
chr4 (122-208)||(45591412-45591498)
chr4 (125-205)||(28693928-28694008)
chr4 (193-258)||(3862619-3862687)
chr4 (193-258)||(3871376-3871444)
chr4 (146-258)||(44379927-44380042)
chr4 (126-182)||(42375016-42375072)
chr4 (126-180)||(47404663-47404717)
chr4 (196-256)||(23444268-23444331)
chr4 (159-208)||(25818412-25818461)
chr4 (126-178)||(53954616-53954668)
chr4 (125-168)||(24006152-24006195)
chr4 (196-258)||(51265521-51265586)
chr4 (120-182)||(52028549-52028611)
chr4 (324-373)||(37005893-37005942)
chr4 (196-256)||(47661918-47661981)
chr4 (125-182)||(55090072-55090129)
chr4 (165-221)||(47762645-47762701)
chr4 (196-258)||(6271778-6271843)
chr4 (196-258)||(42375086-42375151)
chr4 (126-172)||(31430544-31430590)
chr4 (146-182)||(3862622-3862658)
chr4 (146-182)||(3871379-3871415)
chr4 (146-182)||(6271728-6271764)
chr4 (146-182)||(23444345-23444381)
chr4 (146-182)||(30861850-30861886)
chr4 (146-182)||(47661868-47661904)
chr4 (146-182)||(51265471-51265507)
[»] chr5 (35 HSPs)
chr5 (146-268)||(19655145-19655270)
chr5 (121-265)||(19598322-19598468)
chr5 (146-264)||(3899839-3899951)
chr5 (146-265)||(16971143-16971256)
chr5 (146-265)||(291087-291209)
chr5 (122-247)||(16439146-16439274)
chr5 (146-241)||(29699381-29699479)
chr5 (125-258)||(3180065-3180200)
chr5 (146-265)||(30117854-30117976)
chr5 (132-225)||(16802477-16802570)
chr5 (146-265)||(2953197-2953302)
chr5 (146-258)||(28818923-28819029)
chr5 (159-258)||(12913800-12913902)
chr5 (159-225)||(38134412-38134478)
chr5 (126-182)||(3899845-3899901)
chr5 (146-205)||(2093963-2094022)
chr5 (126-182)||(16971150-16971206)
chr5 (196-258)||(2953266-2953331)
chr5 (159-258)||(26662405-26662498)
chr5 (159-258)||(26934000-26934093)
chr5 (196-258)||(16971220-16971285)
chr5 (196-258)||(29699443-29699508)
chr5 (125-182)||(26662404-26662461)
chr5 (125-182)||(26933999-26934056)
chr5 (125-181)||(28818922-28818978)
chr5 (131-213)||(2935838-2935923)
chr5 (196-258)||(3899915-3899980)
chr5 (196-258)||(19655234-19655299)
chr5 (125-155)||(291209-291239)
chr5 (315-381)||(2259380-2259446)
chr5 (146-191)||(14167178-14167223)
chr5 (196-256)||(28818993-28819056)
chr5 (146-191)||(37325584-37325629)
chr5 (125-182)||(38134449-38134506)
chr5 (146-182)||(29699393-29699429)
[»] scaffold0047 (2 HSPs)
scaffold0047 (130-263)||(63758-63885)
scaffold0047 (126-182)||(63763-63819)
[»] chr2 (31 HSPs)
chr2 (146-267)||(16514412-16514536)
chr2 (146-265)||(29508716-29508839)
chr2 (146-265)||(6217250-6217363)
chr2 (126-241)||(15011294-15011412)
chr2 (121-265)||(9172982-9173129)
chr2 (161-264)||(29925611-29925708)
chr2 (147-265)||(37961705-37961817)
chr2 (146-266)||(38933585-38933699)
chr2 (139-249)||(2828599-2828703)
chr2 (128-258)||(2893969-2894093)
chr2 (146-258)||(14229379-14229484)
chr2 (122-208)||(37762003-37762089)
chr2 (126-258)||(38933593-38933728)
chr2 (146-222)||(14470618-14470694)
chr2 (126-257)||(6217222-6217356)
chr2 (159-241)||(6721965-6722050)
chr2 (121-181)||(2893964-2894024)
chr2 (126-182)||(29925646-29925702)
chr2 (159-225)||(24115953-24116019)
chr2 (125-182)||(14229429-14229485)
chr2 (199-258)||(32545867-32545929)
chr2 (126-182)||(37961712-37961768)
chr2 (196-258)||(16514500-16514565)
chr2 (226-265)||(37632981-37633020)
chr2 (132-182)||(2828596-2828646)
chr2 (227-261)||(9172984-9173018)
chr2 (125-187)||(14464560-14464622)
chr2 (315-397)||(18142679-18142760)
chr2 (196-249)||(33018621-33018677)
chr2 (146-222)||(14892297-14892372)
chr2 (196-258)||(29508687-29508753)
[»] chr6 (19 HSPs)
chr6 (121-265)||(551166-551313)
chr6 (146-265)||(12343099-12343212)
chr6 (125-268)||(10521854-10521991)
chr6 (146-258)||(24618627-24618733)
chr6 (146-213)||(13043502-13043569)
chr6 (161-258)||(24587458-24587558)
chr6 (125-182)||(31654310-31654367)
chr6 (141-219)||(2315325-2315403)
chr6 (196-265)||(24975742-24975814)
chr6 (125-182)||(24618677-24618734)
chr6 (178-258)||(31654311-31654385)
chr6 (160-258)||(17750900-17751000)
chr6 (126-182)||(12343106-12343162)
chr6 (125-179)||(2315383-2315437)
chr6 (196-249)||(12343176-12343232)
chr6 (317-362)||(1110504-1110549)
chr6 (324-373)||(22705352-22705401)
chr6 (146-182)||(551241-551277)
chr6 (324-412)||(12435952-12436040)
[»] chr3 (30 HSPs)
chr3 (146-265)||(41752954-41753076)
chr3 (125-265)||(43139714-43139857)
chr3 (125-258)||(33689173-33689309)
chr3 (146-267)||(51046099-51046223)
chr3 (146-265)||(47492073-47492195)
chr3 (122-258)||(47677257-47677387)
chr3 (146-225)||(1801472-1801551)
chr3 (148-258)||(30734430-30734543)
chr3 (122-258)||(18321648-18321787)
chr3 (125-225)||(30476479-30476579)
chr3 (122-213)||(29031716-29031807)
chr3 (125-205)||(49418696-49418776)
chr3 (196-258)||(1801443-1801508)
chr3 (159-221)||(50524739-50524801)
chr3 (125-258)||(55223229-55223365)
chr3 (126-182)||(1801571-1801627)
chr3 (146-249)||(30580782-30580888)
chr3 (143-207)||(50550026-50550090)
chr3 (191-265)||(1801566-1801634)
chr3 (196-258)||(41753040-41753105)
chr3 (125-182)||(47677331-47677388)
chr3 (138-182)||(1801522-1801566)
chr3 (196-258)||(45103106-45103171)
chr3 (125-176)||(49414505-49414556)
chr3 (324-373)||(26430294-26430343)
chr3 (146-191)||(45103135-45103180)
chr3 (226-258)||(1272558-1272590)
chr3 (324-412)||(16309657-16309745)
chr3 (324-412)||(18490651-18490739)
chr3 (125-193)||(45755128-45755195)
[»] scaffold0161 (2 HSPs)
scaffold0161 (159-265)||(27259-27368)
scaffold0161 (126-155)||(27332-27361)
[»] scaffold0016 (3 HSPs)
scaffold0016 (148-265)||(49731-49842)
scaffold0016 (126-182)||(49779-49835)
scaffold0016 (196-258)||(49700-49765)
[»] scaffold0586 (2 HSPs)
scaffold0586 (159-258)||(7086-7187)
scaffold0586 (196-249)||(7053-7109)
[»] scaffold0481 (1 HSPs)
scaffold0481 (125-207)||(2892-2974)
[»] scaffold1033 (1 HSPs)
scaffold1033 (125-206)||(2265-2346)
[»] scaffold1029 (1 HSPs)
scaffold1029 (125-206)||(2265-2346)
[»] scaffold0257 (1 HSPs)
scaffold0257 (323-379)||(16227-16283)
[»] scaffold0180 (1 HSPs)
scaffold0180 (159-205)||(19161-19207)
[»] scaffold0114 (1 HSPs)
scaffold0114 (332-397)||(2976-3041)
[»] scaffold0437 (1 HSPs)
scaffold0437 (324-412)||(14322-14410)


Alignment Details
Target: chr8 (Bit Score: 124; Significance: 1e-63; HSPs: 36)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 267 - 435
Target Start/End: Original strand, 33956277 - 33956444
Alignment:
Q  267 ttgatcgtctatatgataataattgatgattttaacttcannnnnnngggataaatcaggagaaaggacatacatcaagaggtagcaccgacatcctaat 366  Q
    |||||||||||||||||||||||||||||||||||||| |       || |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  33956277 ttgatcgtctatatgataataattgatgattttaactttatttttttgg-ataaatcaggagaaaggacatacatcaaaaggtagcaccgacatcctaat 33956375  T
Q  367 taggttgacatcccgatgaaactccatcctaagacgccaagctcaattttttattttaaaaagggggaa 435  Q
    ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  33956376 tagattgacatcccgatgaaactccatcctaagacgccatgctcaattttttattttaaaaagggggaa 33956444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 125 - 265
Target Start/End: Original strand, 8243393 - 8243536
Alignment:
Q  125 cacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggcca 224  Q
    ||||||||||| ||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||    
T  8243393 cacttgggtgacatagagttgagtgacattgatcaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattgacca 8243492  T
Q  225 a---caccaatgtcacccaactctatgttacccaagtattttcc 265  Q
    |   |||||||||||||||||||||||| |||||||||||||||    
T  8243493 acgtcaccaatgtcacccaactctatgtcacccaagtattttcc 8243536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 146 - 264
Target Start/End: Original strand, 35440995 - 35441116
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa---caccaatgtcacccaac 242  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||   |||||||||||||||||    
T  35440995 ggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaac 35441094  T
Q  243 tctatgttacccaagtattttc 264  Q
    ||||||| ||||||||||||||    
T  35441095 tctatgtcacccaagtattttc 35441116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 146 - 266
Target Start/End: Complemental strand, 5033273 - 5033150
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa---caccaatgtcacccaac 242  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||   |||||||||||||||||    
T  5033273 ggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggtcaatgtcaccaatgtcacccaac 5033174  T
Q  243 tctatgttacccaagtattttccg 266  Q
    ||||||| ||||||||||||||||    
T  5033173 tctatgtcacccaagtattttccg 5033150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 33956156 - 33956243
Alignment:
Q  12 aatactattaaaaactttttaattaatcaactaaaatataaaacaagcatgagcataagtttgttataaaattataaaaacaatgcta 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33956156 aatactattaaaaactttttaattaatcaactaaaatataaaacaagcatgagcataagtttgttataaaattataaaaacaatgcta 33956243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 146 - 265
Target Start/End: Original strand, 33841617 - 33841739
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa---caccaatgtcacccaac 242  Q
    |||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||   |||||||||||||||||    
T  33841617 ggtgacattgaccaatcacattgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattctgattggtcaatgtcaccaatgtcacccaac 33841716  T
Q  243 tctatgttacccaagtattttcc 265  Q
    ||||||| |||||||||||||||    
T  33841717 tctatgtcacccaagtattttcc 33841739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 146 - 262
Target Start/End: Original strand, 45191153 - 45191272
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa---caccaatgtcacccaac 242  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||  |||| ||||||| |||   ||||||| ||| |||||    
T  45191153 ggtgacattgattaatcacaatgccacaatgcttatgaaagagagagaaacacaaacattgtaacattttgattggtcaatgtcaccaatatcatccaac 45191252  T
Q  243 tctatgttacccaagtattt 262  Q
    ||||||| ||||||||||||    
T  45191253 tctatgtcacccaagtattt 45191272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 146 - 264
Target Start/End: Complemental strand, 10086869 - 10086748
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa---caccaatgtcacccaac 242  Q
    |||||||||||| |||||||||| ||||||| ||||||||||||||||||||||| |||| || |||| |||||| ||||   ||| ||||||||||||     
T  10086869 ggtgacattgaccaatcacaatgtcacaatgtttgtgaaagagagagaaacacaaacattatgacattgtgattgaccaatgtcactaatgtcacccaat 10086770  T
Q  243 tctatgttacccaagtattttc 264  Q
    ||||||| ||||||||||||||    
T  10086769 tctatgtcacccaagtattttc 10086748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 125 - 213
Target Start/End: Original strand, 34541808 - 34541896
Alignment:
Q  125 cacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcatt 213  Q
    ||||||||||| ||| ||||||||||||||| | ||||| |||  ||||||||||||||||||||||||||||||||||||||||||||    
T  34541808 cacttgggtgacataaagttgggtgacattggccaatcataatatcacaatgcttgtgaaagagagagaaacacaagcattgtggcatt 34541896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 146 - 265
Target Start/End: Complemental strand, 39851067 - 39850954
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaacaccaatgtcacccaactct 245  Q
    |||||||||||| |||||||||   | |||||||||||||||||||||||||||| |||||||||||| |||||||      ||||||||||||||||||    
T  39851067 ggtgacattgaccaatcacaatattataatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattgg------ccaatgtcacccaactct 39850974  T
Q  246 atgttacccaagtattttcc 265  Q
    || ||||| |||||||||||    
T  39850973 atattacctaagtattttcc 39850954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 146 - 268
Target Start/End: Complemental strand, 8796534 - 8796409
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa---caccaatgtcacccaac 242  Q
    |||||||||||| ||||| |||| |||||||||||||||||| |||||||||||||||||||| |||| |||||| ||||   ||| ||| ||||| |||    
T  8796534 ggtgacattgaccaatcaaaatgtcacaatgcttgtgaaagatagagaaacacaagcattgtgacattgtgattgaccaatatcacaaatatcacctaac 8796435  T
Q  243 tctatgttacccaagtattttccgtt 268  Q
    ||||||| |||||||| || ||||||    
T  8796434 tctatgtcacccaagtgttatccgtt 8796409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 146 - 258
Target Start/End: Complemental strand, 5667209 - 5667094
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa---caccaatgtcacccaac 242  Q
    |||||||||| | ||| |||||| || ||||||||||||||||||||||| |||||||||||| |||| |||||| ||||   ||||||||||| |||||    
T  5667209 ggtgacattggccaattacaatgtcataatgcttgtgaaagagagagaaatacaagcattgtgacattgtgattgaccaatgtcaccaatgtcatccaac 5667110  T
Q  243 tctatgttacccaagt 258  Q
    ||||||| ||||||||    
T  5667109 tctatgtcacccaagt 5667094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 125 - 258
Target Start/End: Complemental strand, 34229774 - 34229638
Alignment:
Q  125 cacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggcca 224  Q
    |||||| |||| |||||||| ||||||||||   |||||||||  |||||||||||||||||||||||||||||||||||| || |||| |||||| |      
T  34229774 cacttgtgtgacatagagttaggtgacattggtcaatcacaatatcacaatgcttgtgaaagagagagaaacacaagcattctgacattgtgattgactc 34229675  T
Q  225 a---caccaatgtcacccaactctatgttacccaagt 258  Q
    |   ||| |||||||||||||||||||| || |||||    
T  34229674 atgtcactaatgtcacccaactctatgtcacacaagt 34229638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 188 - 265
Target Start/End: Complemental strand, 2581895 - 2581815
Alignment:
Q  188 gagagaaacacaagcattgtggcattatgattggccaa---caccaatgtcacccaactctatgttacccaagtattttcc 265  Q
    |||||||||||||||||||||||||| |||||||||||   || ||||||||||||| ||||||| |||||||||||||||    
T  2581895 gagagaaacacaagcattgtggcattgtgattggccaatgtcaacaatgtcacccaattctatgtcacccaagtattttcc 2581815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 195 - 269
Target Start/End: Complemental strand, 22649908 - 22649831
Alignment:
Q  195 acacaagcattgtggcattatgattggccaa---caccaatgtcacccaactctatgttacccaagtattttccgttg 269  Q
    ||||||||||||||||||| ||||| |||||   |||||||||||| ||||||||||| |||||||||||||||||||    
T  22649908 acacaagcattgtggcattgtgattagccaatgtcaccaatgtcactcaactctatgtcacccaagtattttccgttg 22649831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 147 - 225
Target Start/End: Complemental strand, 4958709 - 4958632
Alignment:
Q  147 gtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa 225  Q
    ||||||||||| |||||||| | |||||| |||||||||||||||||||||||| |||| || |||| |||||||||||    
T  4958709 gtgacattgaccaatcacaa-gtcacaatacttgtgaaagagagagaaacacaaacattatgacattgtgattggccaa 4958632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 165 - 258
Target Start/End: Complemental strand, 6296698 - 6296611
Alignment:
Q  165 aatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaacaccaatgtcacccaactctatgttacccaagt 258  Q
    |||| |||||| ||||||||||||||||||||||||||||| || |||| |||||||       ||||||||||||||||||||| | ||||||    
T  6296698 aatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattgg------tcaatgtcacccaactctatgtcatccaagt 6296611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 6296610 - 6296667
Alignment:
Q  125 cacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtg 182  Q
    ||||||| ||| ||||||||||||||||||||| |||||||||| || ||||||||||    
T  6296610 cacttggatgacatagagttgggtgacattgaccaatcacaatgtcataatgcttgtg 6296667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 126 - 182
Target Start/End: Original strand, 39850961 - 39851017
Alignment:
Q  126 acttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtg 182  Q
    |||| ||| ||||||||||||||||||||| | |||||||||||||||||| |||||    
T  39850961 acttaggtaatatagagttgggtgacattggccaatcacaatgccacaatgtttgtg 39851017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 256
Target Start/End: Original strand, 43844534 - 43844608
Alignment:
Q  185 agagagagaaacacaagcattgtggcattatgattggccaa---caccaatgtcacccaactctatgttacccaa 256  Q
    |||||||||||||||||||||||| |||| ||||||  |||   ||||||||||| |||||||||||| ||||||    
T  43844534 agagagagaaacacaagcattgtgacattgtgattgatcaatatcaccaatgtcatccaactctatgtcacccaa 43844608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 196 - 258
Target Start/End: Original strand, 5033237 - 5033302
Alignment:
Q  196 cacaagcattgtggcattatgattggccaa---caccaatgtcacccaactctatgttacccaagt 258  Q
    ||||||||||||| |||| ||||||| |||   |||||||||||||||||||||||| ||||||||    
T  5033237 cacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagt 5033302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 379
Target Start/End: Original strand, 10542671 - 10542724
Alignment:
Q  325 ggagaaaggacatacatcaagaggtagcaccgacatcctaattaggttgacatcc 379  Q
    |||||||||||| ||||||||||| ||||||||||||| ||||| ||||||||||    
T  10542671 ggagaaaggacaaacatcaagaggcagcaccgacatcccaatta-gttgacatcc 10542724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 146 - 195
Target Start/End: Original strand, 35031640 - 35031689
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaa 195  Q
    |||||||||||  |||||||||| | ||||||||||||||||||||||||    
T  35031640 ggtgacattgatcaatcacaatgtcgcaatgcttgtgaaagagagagaaa 35031689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 146 - 182
Target Start/End: Original strand, 5033187 - 5033223
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtg 182  Q
    |||||||||||| ||||||||||||||||||||||||    
T  5033187 ggtgacattgaccaatcacaatgccacaatgcttgtg 5033223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 146 - 182
Target Start/End: Original strand, 22649871 - 22649907
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtg 182  Q
    |||||||||| ||||||||||||||||||||||||||    
T  22649871 ggtgacattggctaatcacaatgccacaatgcttgtg 22649907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 197
Target Start/End: Complemental strand, 31159963 - 31159912
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaaca 197  Q
    |||||||||  | ||||| |||| ||||||||||||||||||||||||||||    
T  31159963 ggtgacattcgccaatcataatgtcacaatgcttgtgaaagagagagaaaca 31159912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 258
Target Start/End: Complemental strand, 33841653 - 33841588
Alignment:
Q  196 cacaagcattgtggcattatgattggccaa---caccaatgtcacccaactctatgttacccaagt 258  Q
    ||||||||||||| || | ||||||| |||   |||||||||||||||||||||||| ||||||||    
T  33841653 cacaagcattgtgacaatgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagt 33841588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 182
Target Start/End: Complemental strand, 34541930 - 34541879
Alignment:
Q  131 ggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtg 182  Q
    ||||||||||||||| |||||||||||  | || ||||||||||||||||||    
T  34541930 ggtgatatagagttgagtgacattgacctagcaaaatgccacaatgcttgtg 34541879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 258
Target Start/End: Complemental strand, 35441031 - 35440966
Alignment:
Q  196 cacaagcattgtggcattatgattggccaa---caccaatgtcacccaactctatgttacccaagt 258  Q
    ||||||||||||| |||| ||||||| |||   ||||||||||||||||||||| || ||||||||    
T  35441031 cacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctaagtcacccaagt 35440966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 265
Target Start/End: Original strand, 5667173 - 5667245
Alignment:
Q  196 cacaagcattgtggcattatgattggccaa---caccaatgtcacccaactctatgttacccaagtattttcc 265  Q
    |||||||||| || |||| | |||||||||   ||||||||||| | |||||||||| |||||||||||||||    
T  5667173 cacaagcattatgacattgtaattggccaatgtcaccaatgtcatcaaactctatgtcacccaagtattttcc 5667245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 373
Target Start/End: Complemental strand, 16290942 - 16290893
Alignment:
Q  324 aggagaaaggacatacatcaagaggtagcaccgacatcctaattaggttg 373  Q
    ||||||||||||| ||||||||||| | ||||||||||| || |||||||    
T  16290942 aggagaaaggacaaacatcaagaggcaacaccgacatcccaactaggttg 16290893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 396
Target Start/End: Original strand, 18036799 - 18036880
Alignment:
Q  315 ggataaatcaggagaaaggacatacatcaagaggtagcaccgacatcctaattaggttgacatcccgatgaaactccatcct 396  Q
    |||||| || ||||| |||||| ||||||||||| | ||||||||||| || || |||| || ||||| ||| |||||||||    
T  18036799 ggataagtcgggagagaggacaaacatcaagaggaaacaccgacatcccaactatgttggcaccccgaggaacctccatcct 18036880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 381
Target Start/End: Original strand, 24184744 - 24184800
Alignment:
Q  325 ggagaaaggacatacatcaagaggtagcaccgacatcctaattaggttgacatcccg 381  Q
    ||||| |||||| ||||||||||| | ||||||||||| || ||||||| |||||||    
T  24184744 ggagagaggacaaacatcaagagggaacaccgacatcccaactaggttggcatcccg 24184800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 33841703 - 33841667
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtg 182  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  33841703 ggtgacattgaccaatcagaatgccacaatgcttgtg 33841667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 35441081 - 35441045
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtg 182  Q
    |||||||||| | ||||||||||||||||||||||||    
T  35441081 ggtgacattggccaatcacaatgccacaatgcttgtg 35441045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 37618735 - 37618802
Alignment:
Q  127 cttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaa 195  Q
    ||||||||| ||||| |||| |||||||| | |||||||||| |||||| ||||| | |||||||||||    
T  37618735 cttgggtgacatagaattgg-tgacattggccaatcacaatgtcacaatccttgtaagagagagagaaa 37618802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 7e-50; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 121 - 268
Target Start/End: Original strand, 34854696 - 34854846
Alignment:
Q  121 gtaacacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattg 220  Q
    ||||||||||||||| |||||||| |||||||||| | ||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||    
T  34854696 gtaacacttgggtgacatagagtttggtgacattggccaatcacaatgccacaatgcttgtgaaagagatagaaacacaaacattgtggcattgtgattg 34854795  T
Q  221 gccaa---caccaatgtcacccaactctatgttacccaagtattttccgtt 268  Q
     ||||   |||||||||||||||||||||||| ||||||||||||||||||    
T  34854796 accaatgtcaccaatgtcacccaactctatgtcacccaagtattttccgtt 34854846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 125 - 267
Target Start/End: Original strand, 41018233 - 41018378
Alignment:
Q  125 cacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggcca 224  Q
    ||||||| ||| ||||||||||||||||||| | |||||||||| | |||||||||||||||||||||||||| ||||||||||||||| ||||||| ||    
T  41018233 cacttggatgacatagagttgggtgacattggccaatcacaatgtcccaatgcttgtgaaagagagagaaacataagcattgtggcattgtgattggtca 41018332  T
Q  225 a---caccaatgtcacccaactctatgttacccaagtattttccgt 267  Q
    |   |||||||||||||||||||||||| |||||||||||||||||    
T  41018333 atgtcaccaatgtcacccaactctatgtcacccaagtattttccgt 41018378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 146 - 265
Target Start/End: Complemental strand, 11016981 - 11016859
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa---caccaatgtcacccaac 242  Q
    |||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||   |||||||||||||||||    
T  11016981 ggtgacattgaccaatcacaatgtcacaatgtttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaac 11016882  T
Q  243 tctatgttacccaagtattttcc 265  Q
    ||||||| |||||||||||||||    
T  11016881 tctatgtcacccaagtattttcc 11016859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 121 - 265
Target Start/End: Original strand, 29053315 - 29053453
Alignment:
Q  121 gtaacacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattg 220  Q
    |||||| |||||||| |||||||| |||||||||| | |||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  29053315 gtaacatttgggtgacatagagtttggtgacattggccaatcacaatgcctcaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattg 29053414  T
Q  221 gccaacaccaatgtcacccaactctatgttacccaagtattttcc 265  Q
    |      |||||||||||||||||||||| |||||||||||||||    
T  29053415 g------ccaatgtcacccaactctatgtcacccaagtattttcc 29053453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 121 - 263
Target Start/End: Original strand, 45231855 - 45231996
Alignment:
Q  121 gtaacacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattg 220  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||||||||||     |||||||||||||||||||| |||||||||  |||| ||||||    
T  45231855 gtaacacttgggtgacatagagttgggtgacattgaccaatcacaatgccact----ttgtgaaagagagagaaacaaaagcattgtaacattgtgattg 45231950  T
Q  221 gccaa---caccaatgtcacccaactctatgttacccaagtatttt 263  Q
    |||||   |||||||||||||||||||||||| |||||||||||||    
T  45231951 gccaatgtcaccaatgtcacccaactctatgtcacccaagtatttt 45231996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 146 - 267
Target Start/End: Complemental strand, 15027654 - 15027530
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa---caccaatgtcacccaac 242  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||| ||| ||||||| |||   |||||||||||  ||||    
T  15027654 ggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtggtattgtgattggtcaatgtcaccaatgtcaaacaac 15027555  T
Q  243 tctatgttacccaagtattttccgt 267  Q
    |||||||||||||||||||||||||    
T  15027554 tctatgttacccaagtattttccgt 15027530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 146 - 267
Target Start/End: Complemental strand, 38975917 - 38975793
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa---caccaatgtcacccaac 242  Q
    |||||||||||  ||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    ||||||||||||||||    
T  38975917 ggtgacattgatcaattataatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattgaccaatgttaccaatgtcacccaac 38975818  T
Q  243 tctatgttacccaagtattttccgt 267  Q
    ||||||| |||||||||||||||||    
T  38975817 tctatgtcacccaagtattttccgt 38975793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 146 - 263
Target Start/End: Complemental strand, 4290657 - 4290537
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa---caccaatgtcacccaac 242  Q
    |||||||||| | |||||||||| |||||| |||||||||||||||||||||| |||||||||||||| |||||| ||||   ||||||| |||||||||    
T  4290657 ggtgacattggccaatcacaatgtcacaattcttgtgaaagagagagaaacacgagcattgtggcattgtgattgaccaatatcaccaatatcacccaac 4290558  T
Q  243 tctatgttacccaagtatttt 263  Q
    ||||||| |||||||||||||    
T  4290557 tctatgtcacccaagtatttt 4290537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 143 - 225
Target Start/End: Original strand, 7671934 - 7672016
Alignment:
Q  143 ttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa 225  Q
    ||||||||||||  | |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  7671934 ttgggtgacattagccaatcacaatgccacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaa 7672016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 146 - 225
Target Start/End: Complemental strand, 48000849 - 48000770
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa 225  Q
    |||||||||||| ||||||||||||||||||  |||||||||||||||||||||| |||||||||||| |||||||||||    
T  48000849 ggtgacattgaccaatcacaatgccacaatgtctgtgaaagagagagaaacacaaacattgtggcattgtgattggccaa 48000770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 125 - 249
Target Start/End: Original strand, 27028798 - 27028925
Alignment:
Q  125 cacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggcca 224  Q
    ||||||||||| |||||||||||| ||||||   |||||||||| |||||||||| |||||||||||||||||||| ||||||| |||| |||||| |||    
T  27028798 cacttgggtgacatagagttgggtaacattggacaatcacaatgtcacaatgcttctgaaagagagagaaacacaaacattgtgacattgtgattgacca 27028897  T
Q  225 a---caccaatgtcacccaactctatgt 249  Q
    |   ||||||  |||||||| |||||||    
T  27028898 atgtcaccaacatcacccaagtctatgt 27028925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 121 - 225
Target Start/End: Complemental strand, 10419595 - 10419491
Alignment:
Q  121 gtaacacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattg 220  Q
    ||||||||||||| | |||||||| |||||||||| || ||||||||| |||||  ||||||||||||||||||||||||| |||||  |||||||||||    
T  10419595 gtaacacttgggtaacatagagtttggtgacattggctgatcacaatgtcacaaaacttgtgaaagagagagaaacacaagtattgtaacattatgattg 10419496  T
Q  221 gccaa 225  Q
     ||||    
T  10419495 accaa 10419491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 146 - 262
Target Start/End: Complemental strand, 42628407 - 42628297
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaacaccaatgtcacccaactct 245  Q
    ||||| |||| | |||||||||| | |||||||||||||||||||||||||| ||||||||||||||| |||||||       |||||||||||||||||    
T  42628407 ggtgatattggccaatcacaatgtcccaatgcttgtgaaagagagagaaacataagcattgtggcattgtgattgg------tcaatgtcacccaactct 42628314  T
Q  246 atgttacccaagtattt 262  Q
    |||| |||||| |||||    
T  42628313 atgtcacccaaatattt 42628297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 132 - 256
Target Start/End: Complemental strand, 4649448 - 4649328
Alignment:
Q  132 gtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagaga--gagaaacacaagcattgtggcattatgattggccaacacc 229  Q
    |||| |||||||| ||||||||||   |||||||||| ||| ||||||||||||||||  |||||||||||||||||| ||||| ||||||      |||    
T  4649448 gtgacatagagtttggtgacattggtcaatcacaatgtcacgatgcttgtgaaagagagagagaaacacaagcattgtagcattgtgattg------acc 4649355  T
Q  230 aatgtcacccaactctatgttacccaa 256  Q
    |||||||||||||||||||| ||||||    
T  4649354 aatgtcacccaactctatgtcacccaa 4649328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 326 - 397
Target Start/End: Original strand, 2040072 - 2040143
Alignment:
Q  326 gagaaaggacatacatcaagaggtagcaccgacatcctaattaggttgacatcccgatgaaactccatccta 397  Q
    |||||||||||||||| |||||||||||||||||||| || ||||||| |||||||||||| || |||||||    
T  2040072 gagaaaggacatacatgaagaggtagcaccgacatcccaactaggttggcatcccgatgaaccttcatccta 2040143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 128 - 179
Target Start/End: Original strand, 42628303 - 42628354
Alignment:
Q  128 ttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgctt 179  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  42628303 ttgggtgacatagagttgggtgacattgaccaatcacaatgccacaatgctt 42628354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 22764753 - 22764820
Alignment:
Q  173 aatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa---caccaatgtcac 237  Q
    |||||||||||||||||||||||||||| ||||||| |||| |||||||||||   ||||||||||||    
T  22764753 aatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattggccaatatcaccaatgtcac 22764820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 146 - 195
Target Start/End: Original strand, 48000720 - 48000769
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaa 195  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||    
T  48000720 ggtgacattgatcaatcacaatgccacaatgcttgtgaaagagagagaaa 48000769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 29053446 - 29053390
Alignment:
Q  126 acttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtg 182  Q
    |||||||||| ||||||||||||||||||| | |||||||||||||||||| |||||    
T  29053446 acttgggtgacatagagttgggtgacattggccaatcacaatgccacaatgtttgtg 29053390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 315 - 421
Target Start/End: Complemental strand, 981014 - 980908
Alignment:
Q  315 ggataaatcaggagaaaggacatacatcaagaggtagcaccgacatcctaattaggttgacatcccgatgaaactccatcctaagacgccaagctcaatt 414  Q
    ||||||||||||||| |||||| ||||||||||| ||| ||||||||| || ||||||| ||  |||  ||| |||||||||| | |||||| |||||      
T  981014 ggataaatcaggagagaggacaaacatcaagaggcagctccgacatcccaactaggttggcactccggagaacctccatcctatgccgccaaactcaaac 980915  T
Q  415 ttttatt 421  Q
    |||||||    
T  980914 ttttatt 980908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 196 - 265
Target Start/End: Complemental strand, 48000756 - 48000684
Alignment:
Q  196 cacaagcattgtggcattatgattggccaa---caccaatgtcacccaactctatgttacccaagtattttcc 265  Q
    |||||||||||||||||| ||||||  |||   ||||||||||||||||||| |||| |||||||||||||||    
T  48000756 cacaagcattgtggcattgtgattgatcaatgtcaccaatgtcacccaactcaatgtcacccaagtattttcc 48000684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 196 - 258
Target Start/End: Original strand, 42628371 - 42628436
Alignment:
Q  196 cacaagcattgtggcattatgattggccaa---caccaatgtcacccaactctatgttacccaagt 258  Q
    ||||||||||| | |||| |||||||||||   |||||||||||||||||||||||| ||||||||    
T  42628371 cacaagcattgggacattgtgattggccaatatcaccaatgtcacccaactctatgtcacccaagt 42628436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 182
Target Start/End: Original strand, 4649328 - 4649382
Alignment:
Q  128 ttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtg 182  Q
    |||||||| |||||||||||||||||||   ||||||||||| ||||||||||||    
T  4649328 ttgggtgacatagagttgggtgacattggtcaatcacaatgctacaatgcttgtg 4649382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 202 - 258
Target Start/End: Original strand, 48000819 - 48000878
Alignment:
Q  202 cattgtggcattatgattggccaa---caccaatgtcacccaactctatgttacccaagt 258  Q
    |||||||||||| ||||||| |||   |||||||||||||||||||||||| ||||||||    
T  48000819 cattgtggcattgtgattggtcaatgtcaccaatgtcacccaactctatgtgacccaagt 48000878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 258
Target Start/End: Original strand, 4290621 - 4290686
Alignment:
Q  196 cacaagcattgtggcattatgattggccaa---caccaatgtcacccaactctatgttacccaagt 258  Q
    |||||| |||||| |||| |||||||||||   |||||||||||||||||| ||||| ||||||||    
T  4290621 cacaagaattgtgacattgtgattggccaatgtcaccaatgtcacccaactgtatgtcacccaagt 4290686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 258
Target Start/End: Original strand, 11016945 - 11017010
Alignment:
Q  196 cacaagcattgtggcattatgattggccaa---caccaatgtcacccaactctatgttacccaagt 258  Q
    ||||| ||||||| |||| ||||||| |||   |||||||||||||||||||||||| ||||||||    
T  11016945 cacaaacattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagt 11017010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 222
Target Start/End: Original strand, 30217503 - 30217556
Alignment:
Q  169 ccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggc 222  Q
    ||||||||||||||||||||||||||||| || |||| ||  ||| ||||||||    
T  30217503 ccacaatgcttgtgaaagagagagaaacataaacattttgatattgtgattggc 30217556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 179
Target Start/End: Complemental strand, 41018340 - 41018307
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgctt 179  Q
    |||||||||||| |||||||||||||||||||||    
T  41018340 ggtgacattgaccaatcacaatgccacaatgctt 41018307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 220
Target Start/End: Complemental strand, 41945954 - 41945893
Alignment:
Q  159 aatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattg 220  Q
    ||||||||||  ||||||||||||||||||| | |||| ||| |||| || |||||||||||    
T  41945954 aatcacaatgttacaatgcttgtgaaagagaaaaaaacgcaaacattatgacattatgattg 41945893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 263
Target Start/End: Original strand, 48249557 - 48249594
Alignment:
Q  226 caccaatgtcacccaactctatgttacccaagtatttt 263  Q
    |||||||||||| ||||||||||||| |||||||||||    
T  48249557 caccaatgtcactcaactctatgttatccaagtatttt 48249594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 182
Target Start/End: Original strand, 11016895 - 11016931
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtg 182  Q
    |||||||||| | ||||||||||||||||||||||||    
T  11016895 ggtgacattggccaatcacaatgccacaatgcttgtg 11016931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 258
Target Start/End: Complemental strand, 27028795 - 27028725
Alignment:
Q  191 agaaacacaagcattgtggcattatgattggccaa---caccaatgtcacccaactctatgttacccaagt 258  Q
    |||||||||||||||||| |||| |||||| ||||   |||||||||||| ||||| ||||| ||| ||||    
T  27028795 agaaacacaagcattgtgacattgtgattgtccaatgtcaccaatgtcactcaactatatgtcaccaaagt 27028725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 6e-44; HSPs: 51)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 146 - 267
Target Start/End: Original strand, 29179623 - 29179747
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa---caccaatgtcacccaac 242  Q
    ||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||   |||||||||||||||||    
T  29179623 ggtgacactgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaac 29179722  T
Q  243 tctatgttacccaagtattttccgt 267  Q
    ||||||| |||||||||||||||||    
T  29179723 tctatgtcacccaagtattttccgt 29179747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 124 - 267
Target Start/End: Complemental strand, 37155181 - 37155034
Alignment:
Q  124 acacttgggtgata-tagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggc 222  Q
    |||||||||||| | |||||||||||||||||| | |||||||||| |||||| |||||||||||||||||||||||||||||||| |||| ||||||||    
T  37155181 acacttgggtgacaatagagttgggtgacattggccaatcacaatgtcacaatacttgtgaaagagagagaaacacaagcattgtgacattgtgattggc 37155082  T
Q  223 caa---caccaatgtcacccaactctatgttacccaagtattttccgt 267  Q
    |||   ||||||||||||| |||||||||| |||||||||||||||||    
T  37155081 caatgtcaccaatgtcaccaaactctatgtcacccaagtattttccgt 37155034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 146 - 265
Target Start/End: Original strand, 48993943 - 48994065
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa---caccaatgtcacccaac 242  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||   |||||||||||||||||    
T  48993943 ggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggtcaatgtcaccaatgtcacccaac 48994042  T
Q  243 tctatgttacccaagtattttcc 265  Q
    ||||||| |||||||||||||||    
T  48994043 tctatgtcacccaagtattttcc 48994065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 146 - 265
Target Start/End: Complemental strand, 5995481 - 5995359
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa---caccaatgtcacccaac 242  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    |||||||||| | |||    
T  5995481 ggtgacattgaccaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgttaccaatgtcatcaaac 5995382  T
Q  243 tctatgttacccaagtattttcc 265  Q
    ||||||| |||||||||||||||    
T  5995381 tctatgtcacccaagtattttcc 5995359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 125 - 267
Target Start/End: Complemental strand, 48498547 - 48498403
Alignment:
Q  125 cacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggcca 224  Q
    ||||||||||| |||||||||| |||||||||| ||||||||||  || ||||||||||||||||||||||||||| |||||||| |||||||||| |||    
T  48498547 cacttgggtgacatagagttgg-tgacattgaccaatcacaatgttaccatgcttgtgaaagagagagaaacacaaacattgtggtattatgattgacca 48498449  T
Q  225 a---caccaatgtcacccaactctatgttacccaagtattttccgt 267  Q
    |   ||| |||||||||||||||||||| |||||||||||||||||    
T  48498448 atgtcacaaatgtcacccaactctatgtcacccaagtattttccgt 48498403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 128 - 268
Target Start/End: Complemental strand, 34062339 - 34062205
Alignment:
Q  128 ttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaaca 227  Q
    |||||| | ||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||| ||||||||||||||| |||||||          
T  34062339 ttgggtaacatagagttgggtgacattgaccaatcacaatgtcacaatgtttgtgaaagagagagaaacataagcattgtggcattgtgattgg------ 34062246  T
Q  228 ccaatgtcacccaactctatgttacccaagtattttccgtt 268  Q
    |||||||||||||||||||||| |||||| |||||||||||    
T  34062245 ccaatgtcacccaactctatgtcacccaaatattttccgtt 34062205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 143 - 265
Target Start/End: Original strand, 44706806 - 44706932
Alignment:
Q  143 ttgggtgacattgactaatcacaa-tgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa---caccaatgtcacc 238  Q
    ||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||   |||||||||||||    
T  44706806 ttgggtgacattggccaatcacaaatgccacaatgcttgtgaaagagagagaaacacaagcattgcggcattgtgattggccaatgtcaccaatgtcacc 44706905  T
Q  239 caactctatgttacccaagtattttcc 265  Q
    ||||||||||| |||||| ||||||||    
T  44706906 caactctatgtcacccaaatattttcc 44706932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 120 - 267
Target Start/End: Original strand, 8337852 - 8337992
Alignment:
Q  120 agtaacacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgatt 219  Q
    |||| ||||| |||||||||||||||| ||||||||   |||||||||| ||||||| ||||||||||||||||||||||| |||||||||||| |||||    
T  8337852 agtagcacttaggtgatatagagttgg-tgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacacaaacattgtggcattgtgatt 8337950  T
Q  220 ggccaacaccaatgtcacccaactctatgttacccaagtattttccgt 267  Q
    ||       ||||||||||||||||||||| |||||||||||||||||    
T  8337951 gg------tcaatgtcacccaactctatgtcacccaagtattttccgt 8337992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 125 - 264
Target Start/End: Original strand, 46333951 - 46334084
Alignment:
Q  125 cacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggcca 224  Q
    ||||||||||| |||||||||| |||||||| | |||||||||| |||||||||||||||||||||| |||||||||||||||| |||| |||||||       
T  46333951 cacttgggtgacatagagttggatgacattggccaatcacaatgtcacaatgcttgtgaaagagagaaaaacacaagcattgtgacattgtgattgg--- 46334047  T
Q  225 acaccaatgtcacccaactctatgttacccaagtattttc 264  Q
        |||||||| |||||||||||| ||||||||||||||    
T  46334048 ---tcaatgtcatccaactctatgtcacccaagtattttc 46334084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 125 - 258
Target Start/End: Complemental strand, 9157443 - 9157307
Alignment:
Q  125 cacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggcca 224  Q
    |||||| |||| |||||||||| |||||||||  |||||||||  ||||||||||| ||||||||||||||||||||||||||| |||| ||||||| ||    
T  9157443 cacttgtgtgacatagagttggttgacattgatcaatcacaatatcacaatgcttgagaaagagagagaaacacaagcattgtgacattgtgattggtca 9157344  T
Q  225 a---caccaatgtcacccaactctatgttacccaagt 258  Q
    |    ||||||||||||||||||||||| || |||||    
T  9157343 atgttaccaatgtcacccaactctatgtcacacaagt 9157307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 147 - 258
Target Start/End: Original strand, 17127591 - 17127705
Alignment:
Q  147 gtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa---caccaatgtcacccaact 243  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||   ||| ||||||||| ||||    
T  17127591 gtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattttgattggtcaatgtcactaatgtcacctaact 17127690  T
Q  244 ctatgttacccaagt 258  Q
    |||| | ||||||||    
T  17127691 ctatatcacccaagt 17127705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 125 - 218
Target Start/End: Original strand, 741507 - 741600
Alignment:
Q  125 cacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgat 218  Q
    |||||| |||||||||| || |||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  741507 cacttgcgtgatatagaattaggtgacattgcccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgat 741600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 159 - 258
Target Start/End: Original strand, 1091583 - 1091685
Alignment:
Q  159 aatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa---caccaatgtcacccaactctatgttaccca 255  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||||| |||| ||||||| |||   ||||||| |||||||||||||||| |||||    
T  1091583 aatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattggtcaaagtcaccaatatcacccaactctatgtcaccca 1091682  T
Q  256 agt 258  Q
    |||    
T  1091683 agt 1091685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 126 - 225
Target Start/End: Original strand, 38674511 - 38674608
Alignment:
Q  126 acttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa 225  Q
    |||||||||| || ||||||||||| |||| | |||||||||| |||||||||||||||  |||||||||||||||||||||| ||||||||||||||||    
T  38674511 acttgggtgacatggagttgggtgatattggccaatcacaatgtcacaatgcttgtgaa--agagagaaacacaagcattgtgacattatgattggccaa 38674608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 126 - 244
Target Start/End: Complemental strand, 4609128 - 4609007
Alignment:
Q  126 acttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa 225  Q
    ||||| |||| |||||||||||||||||||   |||||||||| ||||||||||||||||||||||||||||||| ||||||| |||| |||| || |||    
T  4609128 acttgtgtgacatagagttgggtgacattggtcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgatgggtcaa 4609029  T
Q  226 ---caccaatgtcacccaactc 244  Q
       |||| ||||||||||||||    
T  4609028 tgtcaccgatgtcacccaactc 4609007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 146 - 266
Target Start/End: Original strand, 49444939 - 49445051
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaacaccaatgtcacccaactct 245  Q
    |||||||| ||  ||||||||||  |||||||||||||  |||||||||||||||||||||||||||| |||||||      ||||||||||||||||||    
T  49444939 ggtgacatcgatcaatcacaatgttacaatgcttgtga--gagagagaaacacaagcattgtggcattgtgattgg------ccaatgtcacccaactct 49445030  T
Q  246 atgttacccaagtattttccg 266  Q
    |||| ||||||||||||||||    
T  49445031 atgtcacccaagtattttccg 49445051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 146 - 258
Target Start/End: Original strand, 32540774 - 32540889
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa---caccaatgtcacccaac 242  Q
    |||| ||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||  |||| ||||||| |||   ||||||||||| ||||     
T  32540774 ggtggcattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtaacattgtgattggtcaatgtcaccaatgtcatccaat 32540873  T
Q  243 tctatgttacccaagt 258  Q
    ||||||| ||||||||    
T  32540874 tctatgtcacccaagt 32540889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 137 - 204
Target Start/End: Original strand, 1819506 - 1819573
Alignment:
Q  137 atagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcat 204  Q
    ||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||    
T  1819506 atagagttgggtgacattgatcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcat 1819573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 146 - 225
Target Start/End: Complemental strand, 29371480 - 29371401
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa 225  Q
    ||||| |||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||    
T  29371480 ggtgatattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattggccaa 29371401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 170 - 259
Target Start/End: Original strand, 36290457 - 36290549
Alignment:
Q  170 cacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa---caccaatgtcacccaactctatgttacccaagta 259  Q
    |||||||||||||||||||||||||||||||  |||||| |||| ||||||| |||   |||||||||||||||||||||||| |||||||||    
T  36290457 cacaatgcttgtgaaagagagagaaacacaaatattgtgacattgtgattggtcaatgccaccaatgtcacccaactctatgtcacccaagta 36290549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 128 - 225
Target Start/End: Original strand, 48604955 - 48605052
Alignment:
Q  128 ttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa 225  Q
    |||| |||||||||||| ||||||||||   |||||||||| ||||||  ||||||||||||||||||| ||||||||||| |||||| |||||||||    
T  48604955 ttggatgatatagagttaggtgacattggtcaatcacaatgtcacaatatttgtgaaagagagagaaacgcaagcattgtgacattataattggccaa 48605052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 125 - 200
Target Start/End: Original strand, 28928784 - 28928859
Alignment:
Q  125 cacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaa 200  Q
    ||||||||||| |||||||| |||||||||| | |||||||||| |||| ||||||||||||||||||||||||||    
T  28928784 cacttgggtgacatagagtttggtgacattggccaatcacaatgtcacagtgcttgtgaaagagagagaaacacaa 28928859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 159 - 248
Target Start/End: Complemental strand, 45728386 - 45728294
Alignment:
Q  159 aatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa---caccaatgtcacccaactctatg 248  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||  ||| ||||||| |||   ||||||| |||||||||||||||    
T  45728386 aatcacaatgtcataatgcttgtgaaagagagagaaacacaagcattgtgatattgtgattggtcaatatcaccaatatcacccaactctatg 45728294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 194 - 265
Target Start/End: Complemental strand, 46932061 - 46931987
Alignment:
Q  194 aacacaagcattgtggcattatgattggccaa---caccaatgtcacccaactctatgttacccaagtattttcc 265  Q
    ||||||| |||||||||||| |||||||||||   |||||||||||||||||||||||| |||||||||||||||    
T  46932061 aacacaaacattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtattttcc 46931987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 146 - 258
Target Start/End: Complemental strand, 15220923 - 15220817
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaacaccaatgtcacccaactct 245  Q
    ||||| |||| | |||||||||  |||||||||||||||||||||||||||||||||||||||  ||  ||||||      ||||||||||||||||||     
T  15220923 ggtgatattggccaatcacaatctcacaatgcttgtgaaagagagagaaacacaagcattgtgagatcgtgattg------accaatgtcacccaactcc 15220830  T
Q  246 atgttacccaagt 258  Q
    |||| ||||||||    
T  15220829 atgtcacccaagt 15220817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 132 - 221
Target Start/End: Complemental strand, 47303521 - 47303432
Alignment:
Q  132 gtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattgg 221  Q
    |||| |||||||| ||||||||||   |||||||||| ||||||| ||||||||||||||||||||||| |||| || |||| |||||||    
T  47303521 gtgacatagagttaggtgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacacaaacattatgacattgtgattgg 47303432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 8337983 - 8337927
Alignment:
Q  126 acttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtg 182  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||    
T  8337983 acttgggtgacatagagttgggtgacattgaccaatcacaatgccacaatgtttgtg 8337927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 49445043 - 49444987
Alignment:
Q  126 acttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtg 182  Q
    |||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||    
T  49445043 acttgggtgacatagagttgggtgacattggccaatcacaatgccacaatgcttgtg 49444987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 187 - 256
Target Start/End: Complemental strand, 28395708 - 28395636
Alignment:
Q  187 agagagaaacacaagcattgtggcattatgattggccaa---caccaatgtcacccaactctatgttacccaa 256  Q
    |||||||||||||||||||||| |||| ||||||| |||   |||||||||||| ||||||||||||||||||    
T  28395708 agagagaaacacaagcattgtgacattgtgattggtcaatgtcaccaatgtcactcaactctatgttacccaa 28395636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 146 - 220
Target Start/End: Complemental strand, 33219685 - 33219611
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattg 220  Q
    |||||||||||  |||||||||| || ||||||||||||||||||| |||||||||||||||  |||| ||||||    
T  33219685 ggtgacattgatcaatcacaatgtcataatgcttgtgaaagagagaaaaacacaagcattgtaacattgtgattg 33219611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 122 - 191
Target Start/End: Original strand, 2573157 - 2573226
Alignment:
Q  122 taacacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagaga 191  Q
    ||||||||||| || ||||||||| |||| ||||||||||||||||  |||||||||||||||| |||||    
T  2573157 taacacttgggggacatagagttgagtgatattgactaatcacaatatcacaatgcttgtgaaaaagaga 2573226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 182 - 258
Target Start/End: Complemental strand, 21630118 - 21630039
Alignment:
Q  182 gaaagagagagaaacacaagcattgtggcattatgattggccaa---caccaatgtcacccaactctatgttacccaagt 258  Q
    ||||||||||||||||||||||||||| |||| ||||||| |||   |||||||||||||||||| ||||| || |||||    
T  21630118 gaaagagagagaaacacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactttatgtcacgcaagt 21630039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 46334078 - 46334022
Alignment:
Q  126 acttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtg 182  Q
    |||||||||| |||||||||| |||||||||| |||||||||| |||||||||||||    
T  46334078 acttgggtgacatagagttggatgacattgaccaatcacaatgtcacaatgcttgtg 46334022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 132 - 191
Target Start/End: Original strand, 19711192 - 19711251
Alignment:
Q  132 gtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagaga 191  Q
    |||| ||||||||||||||||||||| ||||||||||  ||||||| |||||||||||||    
T  19711192 gtgacatagagttgggtgacattgaccaatcacaatgttacaatgcatgtgaaagagaga 19711251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 128 - 179
Target Start/End: Original strand, 34062217 - 34062268
Alignment:
Q  128 ttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgctt 179  Q
    |||||||| ||||||||||||||||||| | |||||||||||||||||||||    
T  34062217 ttgggtgacatagagttgggtgacattggccaatcacaatgccacaatgctt 34062268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 125 - 180
Target Start/End: Original strand, 48823890 - 48823945
Alignment:
Q  125 cacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttg 180  Q
    ||||||||||| ||||||||||||||||||| | |||||||||| |||||||||||    
T  48823890 cacttgggtgacatagagttgggtgacattggccaatcacaatgtcacaatgcttg 48823945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 122 - 213
Target Start/End: Original strand, 5694892 - 5694982
Alignment:
Q  122 taacacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcatt 213  Q
    ||||||||| |||| |||||||| ||||||||||   |||||||||   | ||||||||||||||||||||||||||||  |||||| ||||    
T  5694892 taacacttgagtgacatagagtttggtgacattggtcaatcacaatatta-aatgcttgtgaaagagagagaaacacaaatattgtgacatt 5694982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 196 - 258
Target Start/End: Original strand, 5995445 - 5995510
Alignment:
Q  196 cacaagcattgtggcattatgattggccaa---caccaatgtcacccaactctatgttacccaagt 258  Q
    |||||||||||||||||| ||||||| |||   ||||||||||| |||||||||||| ||||||||    
T  5995445 cacaagcattgtggcattgtgattggtcaatgtcaccaatgtcatccaactctatgtcacccaagt 5995510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 196 - 258
Target Start/End: Complemental strand, 48993979 - 48993914
Alignment:
Q  196 cacaagcattgtggcattatgattggccaa---caccaatgtcacccaactctatgttacccaagt 258  Q
    ||||||||||||| |||| ||||||| |||   |||||||||||||||||||||||| ||||||||    
T  48993979 cacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagt 48993914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 196 - 256
Target Start/End: Original strand, 15220887 - 15220950
Alignment:
Q  196 cacaagcattgtggcattatgattggccaa---caccaatgtcacccaactctatgttacccaa 256  Q
    |||||||||||||  ||| |||||||||||   |||||||||||||||||||||||| ||||||    
T  15220887 cacaagcattgtgagattgtgattggccaatatcaccaatgtcacccaactctatgtcacccaa 15220950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 32540810 - 32540755
Alignment:
Q  196 cacaagcattgtggcattatgattggccaa---caccaatgtcacccaactctatg 248  Q
    ||||||||||||| |||| |||||||||||   |||||||||||||||||||||||    
T  32540810 cacaagcattgtgacattgtgattggccaatgccaccaatgtcacccaactctatg 32540755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 48994029 - 48993993
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtg 182  Q
    |||||||||||| ||||||||||||||||||||||||    
T  48994029 ggtgacattgaccaatcacaatgccacaatgcttgtg 48993993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 372
Target Start/End: Complemental strand, 10433285 - 10433235
Alignment:
Q  322 tcaggagaaaggacatacatcaagaggtagcaccgacatcctaattaggtt 372  Q
    |||||||||||||||  |||||||||| ||||||||||||| || ||||||    
T  10433285 tcaggagaaaggacaagcatcaagaggaagcaccgacatcccaactaggtt 10433235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 182
Target Start/End: Complemental strand, 38674633 - 38674579
Alignment:
Q  128 ttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtg 182  Q
    |||||||| |||||||||||||| |||| | ||||| |||| |||||||||||||    
T  38674633 ttgggtgacatagagttgggtgatattggccaatcataatgtcacaatgcttgtg 38674579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 47303400 - 47303457
Alignment:
Q  125 cacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtg 182  Q
    |||||| ||||||||||||| ||||| |||||| |||||||||| || |||| |||||    
T  47303400 cacttgagtgatatagagttaggtgatattgaccaatcacaatgtcataatgtttgtg 47303457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 154
Target Start/End: Complemental strand, 17127709 - 17127677
Alignment:
Q  122 taacacttgggtgatatagagttgggtgacatt 154  Q
    ||||||||||||||||||||||| |||||||||    
T  17127709 taacacttgggtgatatagagttaggtgacatt 17127677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 182
Target Start/End: Original strand, 21630068 - 21630104
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtg 182  Q
    |||||||||||| |||||||||| |||||||||||||    
T  21630068 ggtgacattgaccaatcacaatgtcacaatgcttgtg 21630104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 182
Target Start/End: Original strand, 28395663 - 28395699
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtg 182  Q
    |||||||||||| |||||||||| |||||||||||||    
T  28395663 ggtgacattgaccaatcacaatgtcacaatgcttgtg 28395699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 29179709 - 29179673
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtg 182  Q
    |||||||||| | ||||||||||||||||||||||||    
T  29179709 ggtgacattggccaatcacaatgccacaatgcttgtg 29179673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 33219682 - 33219714
Alignment:
Q  226 caccaatgtcacccaactctatgttacccaagt 258  Q
    ||||||||||| |||||||||||||||||||||    
T  33219682 caccaatgtcatccaactctatgttacccaagt 33219714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 258
Target Start/End: Complemental strand, 49444942 - 49444910
Alignment:
Q  226 caccaatgtcacccaactctatgttacccaagt 258  Q
    |||||||||||||||||||||||| ||||||||    
T  49444942 caccaatgtcacccaactctatgtcacccaagt 49444910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 1e-42; HSPs: 43)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 146 - 265
Target Start/End: Original strand, 23444295 - 23444417
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa---caccaatgtcacccaac 242  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||   |||||||||||||||||    
T  23444295 ggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaac 23444394  T
Q  243 tctatgttacccaagtattttcc 265  Q
    ||||||| |||||| ||||||||    
T  23444395 tctatgtcacccaaatattttcc 23444417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 146 - 264
Target Start/End: Complemental strand, 51265557 - 51265436
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa---caccaatgtcacccaac 242  Q
    |||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||   |||||||||||||||||    
T  51265557 ggtgacattgaccaatcataatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaac 51265458  T
Q  243 tctatgttacccaagtattttc 264  Q
    ||||||| ||||||||||||||    
T  51265457 tctatgtcacccaagtattttc 51265436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 146 - 267
Target Start/End: Complemental strand, 6271814 - 6271690
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa---caccaatgtcacccaac 242  Q
    |||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||   ||||||| |||||||||    
T  6271814 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcaccaatatcacccaac 6271715  T
Q  243 tctatgttacccaagtattttccgt 267  Q
    ||||||| |||||||||||||||||    
T  6271714 tctatgtcacccaagtattttccgt 6271690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 125 - 266
Target Start/End: Original strand, 47404590 - 47404725
Alignment:
Q  125 cacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggcca 224  Q
    ||||||||||| |||||||||||||||||||   |||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||        
T  47404590 cacttgggtgacatagagttgggtgacattggtcaatcacaatgtcacaatgcttgtgaaagagagagaaacccaagcattgtggcattgtgattg---- 47404685  T
Q  225 acaccaatgtcacccaactctatgttacccaagtattttccg 266  Q
      ||||||||||||||||||||||| ||||||||||||||||    
T  47404686 --accaatgtcacccaactctatgtcacccaagtattttccg 47404725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 146 - 265
Target Start/End: Complemental strand, 42375122 - 42375009
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaacaccaatgtcacccaactct 245  Q
    |||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||      |||||||||||||||||||    
T  42375122 ggtgacattgatcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattg------accaatgtcacccaactct 42375029  T
Q  246 atgttacccaagtattttcc 265  Q
    |||| |||||||||||||||    
T  42375028 atgtcacccaagtattttcc 42375009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 146 - 241
Target Start/End: Complemental strand, 47661954 - 47661856
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa---caccaatgtcacccaa 241  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||   ||||||||||||||||    
T  47661954 ggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaa 47661856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 125 - 265
Target Start/End: Original strand, 31430466 - 31430597
Alignment:
Q  125 cacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggcca 224  Q
    ||||||||||| ||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||| |   |||||||| | |||||       
T  31430466 cacttgggtgacatagagttgggtgacattgaccaatcacaatgtcacaatgcttatgaaagagagagaaacacaaac---gtggcattgtaattgg--- 31430559  T
Q  225 acaccaatgtcacccaactctatgttacccaagtattttcc 265  Q
       |||||||||||||||||||||| |||||||||||||||    
T  31430560 ---ccaatgtcacccaactctatgtcacccaagtattttcc 31430597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 125 - 208
Target Start/End: Original strand, 50384110 - 50384193
Alignment:
Q  125 cacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtg 208  Q
    ||||||||||| ||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  50384110 cacttgggtgacatagagttgggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtg 50384193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 170 - 263
Target Start/End: Original strand, 30861824 - 30861920
Alignment:
Q  170 cacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa---caccaatgtcacccaactctatgttacccaagtatttt 263  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||   ||||||| ||| |||||||||||| |||||||||||||    
T  30861824 cacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcaccaatatcatccaactctatgtcacccaagtatttt 30861920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 125 - 258
Target Start/End: Original strand, 55090001 - 55090128
Alignment:
Q  125 cacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggcca 224  Q
    ||||||||||| ||||||||| |||||||||   |||||||||| |||||||||||||||||||||||| |||||||||||||| |||| ||||||        
T  55090001 cacttgggtgacatagagttgagtgacattggtcaatcacaatgtcacaatgcttgtgaaagagagagagacacaagcattgtgacattgtgattg---- 55090096  T
Q  225 acaccaatgtcacccaactctatgttacccaagt 258  Q
      ||||||||||| ||||||||||| ||||||||    
T  55090097 --accaatgtcactcaactctatgtcacccaagt 55090128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 125 - 225
Target Start/End: Complemental strand, 40789312 - 40789212
Alignment:
Q  125 cacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggcca 224  Q
    ||||||||||| |||||||| ||||| |||| | |||||||||| ||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||    
T  40789312 cacttgggtgacatagagtttggtgatattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattggcca 40789213  T
Q  225 a 225  Q
    |    
T  40789212 a 40789212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 137 - 258
Target Start/End: Complemental strand, 52028670 - 52028555
Alignment:
Q  137 atagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaacaccaatgtca 236  Q
    ||||| ||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||| ||||||| |||  |||||||      ||||| |||    
T  52028670 atagaattgggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacatcgtgattgg------ccaatatca 52028577  T
Q  237 cccaactctatgttacccaagt 258  Q
    ||||||||||||| ||||||||    
T  52028576 cccaactctatgtcacccaagt 52028555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 146 - 258
Target Start/End: Complemental strand, 35682278 - 35682163
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa---caccaatgtcacccaac 242  Q
    ||||||||||||  ||||||||| |||||||||||||||||| ||||||||||||| ||| || |||| |||||||||||   ||||||| ||||| |||    
T  35682278 ggtgacattgaccgatcacaatgtcacaatgcttgtgaaagatagagaaacacaagtattatgacattgtgattggccaatgtcaccaatatcacctaac 35682179  T
Q  243 tctatgttacccaagt 258  Q
    ||||||| ||||||||    
T  35682178 tctatgtcacccaagt 35682163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 125 - 208
Target Start/End: Original strand, 24006075 - 24006158
Alignment:
Q  125 cacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtg 208  Q
    ||||||||||| ||| ||||||||||||||| | |||||||||| |||||||||||||||||||||||||||| || |||||||    
T  24006075 cacttgggtgacatacagttgggtgacattggccaatcacaatgacacaatgcttgtgaaagagagagaaacataaacattgtg 24006158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 143 - 258
Target Start/End: Original strand, 26186039 - 26186155
Alignment:
Q  143 ttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa---caccaatgtcaccc 239  Q
    |||||||||||||   |||||||||| |||||||||||||||  ||||||||||||||||||||||  ||| |||||||||||   || |||||| ||||    
T  26186039 ttgggtgacattggtcaatcacaatgtcacaatgcttgtgaa--agagagaaacacaagcattgtgaaattgtgattggccaatgtcatcaatgttaccc 26186136  T
Q  240 aactctatgttacccaagt 258  Q
    |||||||||| ||||||||    
T  26186137 aactctatgtcacccaagt 26186155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 146 - 265
Target Start/End: Complemental strand, 53954722 - 53954609
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaacaccaatgtcacccaactct 245  Q
    |||||||||| | ||| |||||| ||||||||||||||||||| ||||||||| ||||||||| |||| |||||||      |||||||||||||||| |    
T  53954722 ggtgacattgtccaattacaatgtcacaatgcttgtgaaagagtgagaaacactagcattgtgacattgtgattgg------ccaatgtcacccaacttt 53954629  T
Q  246 atgttacccaagtattttcc 265  Q
    || | |||||||||||||||    
T  53954628 atatcacccaagtattttcc 53954609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 122 - 208
Target Start/End: Original strand, 45591412 - 45591498
Alignment:
Q  122 taacacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtg 208  Q
    ||||||||| |||||||||||||||||| ||||    ||||| |||| ||||||||||||||||||||||||||||||| |||||||    
T  45591412 taacacttgtgtgatatagagttgggtggcattcgtcaatcataatgtcacaatgcttgtgaaagagagagaaacacaaacattgtg 45591498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 125 - 205
Target Start/End: Original strand, 28693928 - 28694008
Alignment:
Q  125 cacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcatt 205  Q
    ||||||||||| ||| |||||| |||||||||| |||||||||  ||||||| ||||||||||||||||||||||| ||||    
T  28693928 cacttgggtgacataaagttggatgacattgaccaatcacaatatcacaatgtttgtgaaagagagagaaacacaaacatt 28694008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 193 - 258
Target Start/End: Original strand, 3862619 - 3862687
Alignment:
Q  193 aaacacaagcattgtggcattatgattggccaa---caccaatgtcacccaactctatgttacccaagt 258  Q
    ||||||||||||||||||||| |||||||||||   |||||||||||||||||||||||| ||| ||||    
T  3862619 aaacacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacctaagt 3862687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 193 - 258
Target Start/End: Original strand, 3871376 - 3871444
Alignment:
Q  193 aaacacaagcattgtggcattatgattggccaa---caccaatgtcacccaactctatgttacccaagt 258  Q
    ||||||||||||||||||||| |||||||||||   |||||||||||||||||||||||| ||| ||||    
T  3871376 aaacacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacctaagt 3871444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 146 - 258
Target Start/End: Complemental strand, 44380042 - 44379927
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa---caccaatgtcacccaac 242  Q
    ||||| |||||| ||||||||||  ||||| ||| | ||| |||||||||| ||||||||||| |||||| |||||||||   | |||||||||| ||||    
T  44380042 ggtgatattgaccaatcacaatgttacaatacttataaaatagagagaaacgcaagcattgtgacattataattggccaatgtcgccaatgtcactcaac 44379943  T
Q  243 tctatgttacccaagt 258  Q
    ||||||| | ||||||    
T  44379942 tctatgtcatccaagt 44379927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 126 - 182
Target Start/End: Original strand, 42375016 - 42375072
Alignment:
Q  126 acttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtg 182  Q
    |||||||||| |||||||||||||||||||   ||||||||||||||||||||||||    
T  42375016 acttgggtgacatagagttgggtgacattggtcaatcacaatgccacaatgcttgtg 42375072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 47404717 - 47404663
Alignment:
Q  126 acttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttg 180  Q
    |||||||||| |||||||||||||||||||   ||||||||||||||||||||||    
T  47404717 acttgggtgacatagagttgggtgacattggtcaatcacaatgccacaatgcttg 47404663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 196 - 256
Target Start/End: Complemental strand, 23444331 - 23444268
Alignment:
Q  196 cacaagcattgtggcattatgattggccaa---caccaatgtcacccaactctatgttacccaa 256  Q
    ||||||||||||| |||| ||||||| |||   |||||||||||||||||||||||||||||||    
T  23444331 cacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgttacccaa 23444268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 25818412 - 25818461
Alignment:
Q  159 aatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtg 208  Q
    |||||||||| ||||||| ||||||||||||||||||||||| |||||||    
T  25818412 aatcacaatgtcacaatgattgtgaaagagagagaaacacaatcattgtg 25818461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 53954616 - 53954668
Alignment:
Q  126 acttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgct 178  Q
    |||||||||||||| ||||||||||||||| | |||||||||| |||||||||    
T  53954616 acttgggtgatataaagttgggtgacattggccaatcacaatgtcacaatgct 53954668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 125 - 168
Target Start/End: Complemental strand, 24006195 - 24006152
Alignment:
Q  125 cacttgggtgatatagagttgggtgacattgactaatcacaatg 168  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||    
T  24006195 cacttgggtgacatagagttgggtgacattgaccaatcacaatg 24006152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 196 - 258
Target Start/End: Original strand, 51265521 - 51265586
Alignment:
Q  196 cacaagcattgtggcattatgattggccaa---caccaatgtcacccaactctatgttacccaagt 258  Q
    ||||||||||||| |||||||||||| |||   ||||||||||||||||||||| || ||||||||    
T  51265521 cacaagcattgtgacattatgattggtcaatgtcaccaatgtcacccaactctaagtcacccaagt 51265586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 182
Target Start/End: Original strand, 52028549 - 52028611
Alignment:
Q  120 agtaacacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtg 182  Q
    |||||||||||||||| |||||||||||||| |||| | |||||| ||| ||||||| |||||    
T  52028549 agtaacacttgggtgacatagagttgggtgatattggccaatcacgatgtcacaatgtttgtg 52028611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 324 - 373
Target Start/End: Original strand, 37005893 - 37005942
Alignment:
Q  324 aggagaaaggacatacatcaagaggtagcaccgacatcctaattaggttg 373  Q
    |||||| ||||||| |||||||||| ||||||||||||| ||||||||||    
T  37005893 aggagagaggacatgcatcaagaggaagcaccgacatcccaattaggttg 37005942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 196 - 256
Target Start/End: Original strand, 47661918 - 47661981
Alignment:
Q  196 cacaagcattgtggcattatgattggccaa---caccaatgtcacccaactctatgttacccaa 256  Q
    ||||||||||||| |||| ||||||| |||   |||||||||||||||||||||||| ||||||    
T  47661918 cacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaa 47661981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 55090129 - 55090072
Alignment:
Q  125 cacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtg 182  Q
    ||||||||||| ||||||||| |||||||||   |||||||||| |||||||||||||    
T  55090129 cacttgggtgacatagagttgagtgacattggtcaatcacaatgtcacaatgcttgtg 55090072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 47762701 - 47762645
Alignment:
Q  165 aatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattgg 221  Q
    |||| |||||||||||||||||||||||||||| || ||||||  |||| |||||||    
T  47762701 aatgtcacaatgcttgtgaaagagagagaaacataaacattgtaacattgtgattgg 47762645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 258
Target Start/End: Original strand, 6271778 - 6271843
Alignment:
Q  196 cacaagcattgtggcattatgattggccaa---caccaatgtcacccaactctatgttacccaagt 258  Q
    ||||||||||||| |||| |||||||||||   ||||||| |||| ||||||||||| ||||||||    
T  6271778 cacaagcattgtgacattgtgattggccaatgtcaccaatatcactcaactctatgtcacccaagt 6271843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 258
Target Start/End: Original strand, 42375086 - 42375151
Alignment:
Q  196 cacaagcattgtggcattatgattggccaa---caccaatgtcacccaactctatgttacccaagt 258  Q
    ||||||||||||| |||| ||||||  |||   |||||||||||||||||||||||| ||||||||    
T  42375086 cacaagcattgtgacattgtgattgatcaatgtcaccaatgtcacccaactctatgtcacccaagt 42375151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 172
Target Start/End: Complemental strand, 31430590 - 31430544
Alignment:
Q  126 acttgggtgatatagagttgggtgacattgactaatcacaatgccac 172  Q
    |||||||||| ||||||||||||||||||| | ||| ||||||||||    
T  31430590 acttgggtgacatagagttgggtgacattggccaattacaatgccac 31430544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 3862658 - 3862622
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtg 182  Q
    |||||||||| | ||||||||||||||||||||||||    
T  3862658 ggtgacattggccaatcacaatgccacaatgcttgtg 3862622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 3871415 - 3871379
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtg 182  Q
    |||||||||| | ||||||||||||||||||||||||    
T  3871415 ggtgacattggccaatcacaatgccacaatgcttgtg 3871379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 182
Target Start/End: Original strand, 6271728 - 6271764
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtg 182  Q
    |||||||||| | ||||||||||||||||||||||||    
T  6271728 ggtgacattggccaatcacaatgccacaatgcttgtg 6271764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 23444381 - 23444345
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtg 182  Q
    |||||||||| | ||||||||||||||||||||||||    
T  23444381 ggtgacattggccaatcacaatgccacaatgcttgtg 23444345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 30861886 - 30861850
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtg 182  Q
    |||||||||| | ||||||||||||||||||||||||    
T  30861886 ggtgacattggccaatcacaatgccacaatgcttgtg 30861850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 182
Target Start/End: Original strand, 47661868 - 47661904
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtg 182  Q
    |||||||||| | ||||||||||||||||||||||||    
T  47661868 ggtgacattggccaatcacaatgccacaatgcttgtg 47661904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 182
Target Start/End: Original strand, 51265471 - 51265507
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtg 182  Q
    |||||||||| | ||||||||||||||||||||||||    
T  51265471 ggtgacattggccaatcacaatgccacaatgcttgtg 51265507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 4e-42; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 146 - 268
Target Start/End: Complemental strand, 19655270 - 19655145
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa---caccaatgtcacccaac 242  Q
    |||||||||| | |||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||   |||||||||||||||||    
T  19655270 ggtgacattgtccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcaccaatgtcacccaac 19655171  T
Q  243 tctatgttacccaagtattttccgtt 268  Q
    ||||||| ||||||||||||||||||    
T  19655170 tctatgtcacccaagtattttccgtt 19655145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 121 - 265
Target Start/End: Complemental strand, 19598468 - 19598322
Alignment:
Q  121 gtaacacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattg 220  Q
    ||||||||||||||| |||||||||||||||||| || ||||| |||| || ||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  19598468 gtaacacttgggtgacatagagttgggtgacattaaccaatcataatgtca-aatgcttgtgaaagagagagaaacacaagcattgtggtattgtgattg 19598370  T
Q  221 gccaa---caccaatgtcacccaactctatgttacccaagtattttcc 265  Q
     ||||   ||||||||| |||||||||||||| |||||||||||||||    
T  19598369 accaatgtcaccaatgttacccaactctatgtcacccaagtattttcc 19598322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 146 - 264
Target Start/End: Complemental strand, 3899951 - 3899839
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaacaccaatgtcacccaactct 245  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||      ||||||||||||||||||    
T  3899951 ggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattgg------ccaatgtcacccaactct 3899858  T
Q  246 atgttacccaagtattttc 264  Q
    |||| ||||||||||||||    
T  3899857 atgtcacccaagtattttc 3899839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 146 - 265
Target Start/End: Complemental strand, 16971256 - 16971143
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaacaccaatgtcacccaactct 245  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||      |||||||||||||| |||    
T  16971256 ggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattgg------ccaatgtcacccaagtct 16971163  T
Q  246 atgttacccaagtattttcc 265  Q
    |||| |||||||||||||||    
T  16971162 atgtcacccaagtattttcc 16971143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 146 - 265
Target Start/End: Complemental strand, 291209 - 291087
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa---caccaatgtcacccaac 242  Q
    |||||||||||  |||||||||| ||||||| |||||||||||| ||||| ||||||||||||||||| |||||||||||   |||||||||||||||||    
T  291209 ggtgacattgatcaatcacaatgtcacaatgtttgtgaaagagaaagaaatacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaac 291110  T
Q  243 tctatgttacccaagtattttcc 265  Q
    ||||||| || ||||||||||||    
T  291109 tctatgtcactcaagtattttcc 291087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 122 - 247
Target Start/End: Complemental strand, 16439274 - 16439146
Alignment:
Q  122 taacacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattgg 221  Q
    ||||| ||| |||| ||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||     
T  16439274 taacatttgtgtgacatagagttgggtgacattgatcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgattga 16439175  T
Q  222 ccaa---caccaatgtcacccaactctat 247  Q
    ||||   ||||||| | ||||||||||||    
T  16439174 ccaatgtcaccaatattacccaactctat 16439146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 146 - 241
Target Start/End: Complemental strand, 29699479 - 29699381
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa---caccaatgtcacccaa 241  Q
    |||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||   ||||||||||||||||    
T  29699479 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaa 29699381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 125 - 258
Target Start/End: Original strand, 3180065 - 3180200
Alignment:
Q  125 cacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggcca 224  Q
    |||||| |||| ||||||||||||||||||||  ||||| |||| ||||||| |||||||||||||||||||||||||||||||||||| |||||| |||    
T  3180065 cacttgtgtgacatagagttgggtgacattgatcaatcataatgtcacaatgtttgtgaaagagagagaaacacaagcattgtggcattgtgattgacca 3180164  T
Q  225 a---caccaatgtcacccaactctatgttacccaagt 258  Q
    |   ||||||||| | |||||||||||| || |||||    
T  3180165 atgtcaccaatgtta-ccaactctatgtgacacaagt 3180200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 146 - 265
Target Start/End: Original strand, 30117854 - 30117976
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa---caccaatgtcacccaac 242  Q
    ||||| |||||| |||||||||| ||||||| || ||||| |||||||||||||||||||||||||||||||||| ||||   ||||||||||| |||||    
T  30117854 ggtgatattgaccaatcacaatgtcacaatgtttatgaaaaagagagaaacacaagcattgtggcattatgattgaccaatatcaccaatgtcatccaac 30117953  T
Q  243 tctatgttacccaagtattttcc 265  Q
    ||||||| | |||| ||||||||    
T  30117954 tctatgtcatccaaatattttcc 30117976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 132 - 225
Target Start/End: Complemental strand, 16802570 - 16802477
Alignment:
Q  132 gtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa 225  Q
    |||||||||||||| ||||||||||| ||||| |||| |||||||||||| ||||||||||||||||||  |||||  |||| |||||||||||    
T  16802570 gtgatatagagttgagtgacattgaccaatcagaatgtcacaatgcttgtaaaagagagagaaacacaaatattgttacattgtgattggccaa 16802477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 146 - 265
Target Start/End: Complemental strand, 2953302 - 2953197
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaacaccaatgtcacccaactct 245  Q
    |||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||        ||||||      |||||||||||||||||||    
T  2953302 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattg--------tgattg------accaatgtcacccaactct 2953217  T
Q  246 atgttacccaagtattttcc 265  Q
    |||| |||||||||||||||    
T  2953216 atgtcacccaagtattttcc 2953197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 146 - 258
Target Start/End: Complemental strand, 28819029 - 28818923
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaacaccaatgtcacccaactct 245  Q
    ||||||||||   ||||| |||| |||||||||||||||||||||||||| ||||| |||||| |||| ||||||      |||||||||||||||||||    
T  28819029 ggtgacattggtcaatcataatgtcacaatgcttgtgaaagagagagaaatacaagtattgtgacattgtgattg------accaatgtcacccaactct 28818936  T
Q  246 atgttacccaagt 258  Q
    |||| ||||||||    
T  28818935 atgtcacccaagt 28818923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 159 - 258
Target Start/End: Complemental strand, 12913902 - 12913800
Alignment:
Q  159 aatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa---caccaatgtcacccaactctatgttaccca 255  Q
    |||||||||| || ||||||||||||||||||||| ||||||| |||||| |||| |||||||||||   |||||||||||| ||||| ||||| || ||    
T  12913902 aatcacaatgtcataatgcttgtgaaagagagagatacacaagaattgtgacattgtgattggccaatgtcaccaatgtcactcaactatatgtcacaca 12913803  T
Q  256 agt 258  Q
    |||    
T  12913802 agt 12913800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 159 - 225
Target Start/End: Original strand, 38134412 - 38134478
Alignment:
Q  159 aatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa 225  Q
    |||||||||| ||||||||| |||||||||| |||||||||||||||||| |||| |||||||||||    
T  38134412 aatcacaatgtcacaatgctagtgaaagagaaagaaacacaagcattgtgacattgtgattggccaa 38134478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 126 - 182
Target Start/End: Original strand, 3899845 - 3899901
Alignment:
Q  126 acttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtg 182  Q
    |||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||    
T  3899845 acttgggtgacatagagttgggtgacattggccaatcacaatgccacaatgcttgtg 3899901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 146 - 205
Target Start/End: Original strand, 2093963 - 2094022
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcatt 205  Q
    |||||||||||  |||||||||| || |||||||||||||||||||||||||||||||||    
T  2093963 ggtgacattgatcaatcacaatgtcataatgcttgtgaaagagagagaaacacaagcatt 2094022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 126 - 182
Target Start/End: Original strand, 16971150 - 16971206
Alignment:
Q  126 acttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtg 182  Q
    |||||||||| ||||| ||||||||||||| | ||||||||||||||||||||||||    
T  16971150 acttgggtgacatagacttgggtgacattggccaatcacaatgccacaatgcttgtg 16971206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 196 - 258
Target Start/End: Original strand, 2953266 - 2953331
Alignment:
Q  196 cacaagcattgtggcattatgattggccaa---caccaatgtcacccaactctatgttacccaagt 258  Q
    ||||||||||||| |||| |||||||||||   |||||||||||||||||||||||| ||||||||    
T  2953266 cacaagcattgtgacattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagt 2953331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 258
Target Start/End: Complemental strand, 26662498 - 26662405
Alignment:
Q  159 aatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaacaccaatgtcacccaactctatgttacccaagt 258  Q
    |||||||||| |||||| ||||||||| ||||||||||||||||| |||  |||| |||||||       ||||||||||||||||||||| || |||||    
T  26662498 aatcacaatgtcacaatacttgtgaaaaagagagaaacacaagcaatgtaacattgtgattgg------tcaatgtcacccaactctatgtcacacaagt 26662405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 258
Target Start/End: Complemental strand, 26934093 - 26934000
Alignment:
Q  159 aatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaacaccaatgtcacccaactctatgttacccaagt 258  Q
    |||||||||| |||||| ||||||||| ||||||||||||||||| |||  |||| |||||||       ||||||||||||||||||||| || |||||    
T  26934093 aatcacaatgtcacaatacttgtgaaaaagagagaaacacaagcaatgtaacattgtgattgg------tcaatgtcacccaactctatgtcacacaagt 26934000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 196 - 258
Target Start/End: Original strand, 16971220 - 16971285
Alignment:
Q  196 cacaagcattgtggcattatgattggccaa---caccaatgtcacccaactctatgttacccaagt 258  Q
    ||||||||||||| |||| ||||||| |||   |||||||||||||||||||||||| ||||||||    
T  16971220 cacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagt 16971285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 196 - 258
Target Start/End: Original strand, 29699443 - 29699508
Alignment:
Q  196 cacaagcattgtggcattatgattggccaa---caccaatgtcacccaactctatgttacccaagt 258  Q
    ||||||||||||| |||| |||||||||||   ||||||| |||||||||||||||| ||||||||    
T  29699443 cacaagcattgtgacattgtgattggccaatgtcaccaatatcacccaactctatgtcacccaagt 29699508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 26662404 - 26662461
Alignment:
Q  125 cacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtg 182  Q
    |||||| |||| ||||||||||||||||||||| ||||||||||  ||| ||||||||    
T  26662404 cacttgtgtgacatagagttgggtgacattgaccaatcacaatgttacattgcttgtg 26662461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 26933999 - 26934056
Alignment:
Q  125 cacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtg 182  Q
    |||||| |||| ||||||||||||||||||||| ||||||||||  ||| ||||||||    
T  26933999 cacttgtgtgacatagagttgggtgacattgaccaatcacaatgttacattgcttgtg 26934056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 181
Target Start/End: Original strand, 28818922 - 28818978
Alignment:
Q  125 cacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgt 181  Q
    ||||||||||| |||||||||||||||||||   |||||||||| |||||| |||||    
T  28818922 cacttgggtgacatagagttgggtgacattggtcaatcacaatgtcacaatacttgt 28818978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 213
Target Start/End: Original strand, 2935838 - 2935923
Alignment:
Q  131 ggtgatatagagttgggtgacattga---ctaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcatt 213  Q
    ||||||||||||||| |||||||| |    ||||||||||| || |||| |||| ||||| |||||||||||| ||||||| ||||    
T  2935838 ggtgatatagagttgtgtgacattaattgttaatcacaatgtcataatgtttgtaaaagatagagaaacacaaacattgtgacatt 2935923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 258
Target Start/End: Original strand, 3899915 - 3899980
Alignment:
Q  196 cacaagcattgtggcattatgattggccaa---caccaatgtcacccaactctatgttacccaagt 258  Q
    ||||||||||||| |||| ||||||| |||   ||||||||||||||||||||| || ||||||||    
T  3899915 cacaagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctaagtcacccaagt 3899980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 258
Target Start/End: Original strand, 19655234 - 19655299
Alignment:
Q  196 cacaagcattgtggcattatgattggccaa---caccaatgtcacccaactctatgttacccaagt 258  Q
    ||||||||||||| |||| ||||||| |||   |||||||||||| ||||||||||| ||||||||    
T  19655234 cacaagcattgtgacattgtgattggacaatgtcaccaatgtcactcaactctatgtcacccaagt 19655299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 155
Target Start/End: Complemental strand, 291239 - 291209
Alignment:
Q  125 cacttgggtgatatagagttgggtgacattg 155  Q
    |||||||||||||||||||||||||||||||    
T  291239 cacttgggtgatatagagttgggtgacattg 291209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 381
Target Start/End: Original strand, 2259380 - 2259446
Alignment:
Q  315 ggataaatcaggagaaaggacatacatcaagaggtagcaccgacatcctaattaggttgacatcccg 381  Q
    ||||||||| |||||  |||||| |||||||||| | ||||||||||| || ||||||| |||||||    
T  2259380 ggataaatcgggagagtggacatgcatcaagaggaaacaccgacatcccaactaggttggcatcccg 2259446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 191
Target Start/End: Original strand, 14167178 - 14167223
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagaga 191  Q
    |||||| ||||| |||||||||| |||||| |||||||||||||||    
T  14167178 ggtgactttgacgaatcacaatgtcacaatccttgtgaaagagaga 14167223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 256
Target Start/End: Original strand, 28818993 - 28819056
Alignment:
Q  196 cacaagcattgtggcattatgattggccaa---caccaatgtcacccaactctatgttacccaa 256  Q
    ||||||||||||| ||||||||||| ||||   ||||||| |||| ||||||||||| ||||||    
T  28818993 cacaagcattgtgacattatgattgaccaatgtcaccaatatcactcaactctatgtcacccaa 28819056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 191
Target Start/End: Original strand, 37325584 - 37325629
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagaga 191  Q
    |||| ||||||| |||||||||| |||||| |||||||||||||||    
T  37325584 ggtggcattgacgaatcacaatgtcacaatccttgtgaaagagaga 37325629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 38134506 - 38134449
Alignment:
Q  125 cacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtg 182  Q
    |||||||| || |||||||||| ||| |||| | |||||||||| |||||||||||||    
T  38134506 cacttgggcgacatagagttggatgatattggccaatcacaatgtcacaatgcttgtg 38134449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 182
Target Start/End: Original strand, 29699393 - 29699429
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtg 182  Q
    |||||||||| | ||||||||||||||||||||||||    
T  29699393 ggtgacattggccaatcacaatgccacaatgcttgtg 29699429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 130 - 263
Target Start/End: Complemental strand, 63885 - 63758
Alignment:
Q  130 gggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaacacc 229  Q
    |||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||      ||    
T  63885 gggtgatatagagttgggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattgg------cc 63792  T
Q  230 aatgtcacccaactctatgttacccaagtatttt 263  Q
    |||||||||||||||||||| |||||||||||||    
T  63791 aatgtcacccaactctatgtcacccaagtatttt 63758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 126 - 182
Target Start/End: Original strand, 63763 - 63819
Alignment:
Q  126 acttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtg 182  Q
    |||||||||| ||||||||||||||||||| | |||||||||||||||||| |||||    
T  63763 acttgggtgacatagagttgggtgacattggccaatcacaatgccacaatgtttgtg 63819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 2e-41; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 146 - 267
Target Start/End: Complemental strand, 16514536 - 16514412
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa---caccaatgtcacccaac 242  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||  |||||||||||   |||||||||||||||||    
T  16514536 ggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattatggcatagtgattggccaatgtcaccaatgtcacccaac 16514437  T
Q  243 tctatgttacccaagtattttccgt 267  Q
    ||||||| |||||||||||||||||    
T  16514436 tctatgtcacccaagtattttccgt 16514412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 146 - 265
Target Start/End: Original strand, 29508716 - 29508839
Alignment:
Q  146 ggtgacattgactaatcacaa-tgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa---caccaatgtcacccaa 241  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||   ||||||| ||||||||    
T  29508716 ggtgacattgaccaatcacaaatgccacaatgcttgtgaaagagagagaaacacaagcattgcggcattgtgattggccaatgtcaccaatatcacccaa 29508815  T
Q  242 ctctatgttacccaagtattttcc 265  Q
    |||||||| |||||||||||||||    
T  29508816 ctctatgtcacccaagtattttcc 29508839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 146 - 265
Target Start/End: Original strand, 6217250 - 6217363
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaacaccaatgtcacccaactct 245  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||      ||||||||||||||||||    
T  6217250 ggtgacattggccaatcacaatgccacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattgg------ccaatgtcacccaactct 6217343  T
Q  246 atgttacccaagtattttcc 265  Q
    |||| |||||||||||||||    
T  6217344 atgtcacccaagtattttcc 6217363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 126 - 241
Target Start/End: Complemental strand, 15011412 - 15011294
Alignment:
Q  126 acttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa 225  Q
    |||||||||| ||||||||| ||||||||| | |||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  15011412 acttgggtgacatagagttgagtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaa 15011313  T
Q  226 ---caccaatgtcacccaa 241  Q
       ||||||||||||||||    
T  15011312 tatcaccaatgtcacccaa 15011294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 121 - 265
Target Start/End: Original strand, 9172982 - 9173129
Alignment:
Q  121 gtaacacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattg 220  Q
    |||| |||||||||| |||||||||||||||||||  | |||| ||||||| ||||||| | ||||| ||||||| ||||||||||||||||| ||||||    
T  9172982 gtaatacttgggtgacatagagttgggtgacattggttcatcagaatgccataatgcttataaaagaaagagaaatacaagcattgtggcattgtgattg 9173081  T
Q  221 gccaa---caccaatgtcacccaactctatgttacccaagtattttcc 265  Q
    |||||   |||||||||||||||||||||||| ||| || ||||||||    
T  9173082 gccaatatcaccaatgtcacccaactctatgtcacctaaatattttcc 9173129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 161 - 264
Target Start/End: Original strand, 29925611 - 29925708
Alignment:
Q  161 tcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaacaccaatgtcacccaactctatgttacccaagtat 260  Q
    |||||||| || |||||||||||||||||||||||||||| |||||||||||| |||||||      |||||||||||||||||||||||||||||||||    
T  29925611 tcacaatgtcagaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattgg------ccaatgtcacccaactctatgttacccaagtat 29925704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 147 - 265
Target Start/End: Complemental strand, 37961817 - 37961705
Alignment:
Q  147 gtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaacaccaatgtcacccaactcta 246  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||| ||       ||||||||||||||||||    
T  37961817 gtgacattgaccaatcacaatgccacaatgcttgtgaaagagagagaaacacaaacattatggcattgtgatcgg------tcaatgtcacccaactcta 37961724  T
Q  247 tgttacccaagtattttcc 265  Q
    ||  |||||||||||||||    
T  37961723 tgccacccaagtattttcc 37961705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 146 - 266
Target Start/End: Complemental strand, 38933699 - 38933585
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaacaccaatgtcacccaactct 245  Q
    |||||| ||| | ||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||       |||||||||||||||||    
T  38933699 ggtgacgttggccaatcataatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattgg------tcaatgtcacccaactct 38933606  T
Q  246 atgttacccaagtattttccg 266  Q
    |||| ||| ||||||||||||    
T  38933605 atgtcacctaagtattttccg 38933585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 139 - 249
Target Start/End: Complemental strand, 2828703 - 2828599
Alignment:
Q  139 agagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaacaccaatgtcacc 238  Q
    ||||||||||||||||| | |||||||||| |||||||||| ||||||||||||||||||||||||| || |||| |||||||      |||||||||||    
T  2828703 agagttgggtgacattggccaatcacaatgtcacaatgcttctgaaagagagagaaacacaagcattttgacattgtgattgg------ccaatgtcacc 2828610  T
Q  239 caactctatgt 249  Q
    |||||||||||    
T  2828609 caactctatgt 2828599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 128 - 258
Target Start/End: Complemental strand, 2894093 - 2893969
Alignment:
Q  128 ttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaaca 227  Q
    |||||||| |||||||||| ||||||||   ||||||| || |||||||||||||||||||||||||| ||||||||||||  ||| |||||||          
T  2894093 ttgggtgacatagagttggatgacattggtcaatcacagtgtcacaatgcttgtgaaagagagagaaatacaagcattgtgagattgtgattgg------ 2894000  T
Q  228 ccaatgtcacccaactctatgttacccaagt 258  Q
    |||||||||||||||||||||| ||||||||    
T  2893999 ccaatgtcacccaactctatgtcacccaagt 2893969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 146 - 258
Target Start/End: Original strand, 14229379 - 14229484
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaacaccaatgtcacccaactct 245  Q
    ||||||||||   |||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||       ||||||||| ||||||||    
T  14229379 ggtgacattggtcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgattg-------ccaatgtcatccaactct 14229471  T
Q  246 atgttacccaagt 258  Q
    |||| ||||||||    
T  14229472 atgtcacccaagt 14229484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 122 - 208
Target Start/End: Original strand, 37762003 - 37762089
Alignment:
Q  122 taacacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtg 208  Q
    ||||| ||||||||  |||||||| ||||||||||| |||||||||| | |||||||||||||||||| ||||||||||||||||||    
T  37762003 taacatttgggtgacgtagagttgagtgacattgaccaatcacaatgtcgcaatgcttgtgaaagagaaagaaacacaagcattgtg 37762089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 126 - 258
Target Start/End: Original strand, 38933593 - 38933728
Alignment:
Q  126 acttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa 225  Q
    |||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||             ||||||||||||| ||||||||||||||||    
T  38933593 acttaggtgacatagagttgggtgacattgaccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattatgattggccaa 38933692  T
Q  226 ---caccaatgtcacccaactctatgttacccaagt 258  Q
       |||||||||||||||||||||||| ||||||||    
T  38933693 cgtcaccaatgtcacccaactctatgtcacccaagt 38933728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 146 - 222
Target Start/End: Original strand, 14470618 - 14470694
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggc 222  Q
    |||||||||||| ||||||||||   ||||||||||||||||||||||||||||| ||||||| |||| ||||||||    
T  14470618 ggtgacattgaccaatcacaatgttgcaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattggc 14470694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 126 - 257
Target Start/End: Complemental strand, 6217356 - 6217222
Alignment:
Q  126 acttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa 225  Q
    |||||||||| ||||||||||||||||||| | |||||||||||||||||| |||||             |||||||||||||||||| |||||||||||    
T  6217356 acttgggtgacatagagttgggtgacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtggcattgtgattggccaa 6217257  T
Q  226 ---caccaatgtcacccaactctatgttacccaag 257  Q
       |||||||||||||||||||||||| |||||||    
T  6217256 tgtcaccaatgtcacccaactctatgtcacccaag 6217222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 159 - 241
Target Start/End: Complemental strand, 6722050 - 6721965
Alignment:
Q  159 aatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa---caccaatgtcacccaa 241  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||  ||| ||||||| |||   ||||||||||| ||||    
T  6722050 aatcacaatgtcacaatgtttgtgaaagagagagaaacacaagcattgtgatattgtgattggtcaatgtcaccaatgtcatccaa 6721965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 121 - 181
Target Start/End: Original strand, 2893964 - 2894024
Alignment:
Q  121 gtaacacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgt 181  Q
    ||||||||||||||| ||||||||||||||||||| | |||||||||  ||||||||||||    
T  2893964 gtaacacttgggtgacatagagttgggtgacattggccaatcacaatctcacaatgcttgt 2894024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 29925702 - 29925646
Alignment:
Q  126 acttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtg 182  Q
    |||||||| | ||||||||||||||||||| | |||||||||||||||||| |||||    
T  29925702 acttgggtaacatagagttgggtgacattggccaatcacaatgccacaatgtttgtg 29925646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 225
Target Start/End: Complemental strand, 24116019 - 24115953
Alignment:
Q  159 aatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa 225  Q
    |||||||||| | ||||||||||||||||| | |||||||| |||||||  |||| |||||||||||    
T  24116019 aatcacaatgtcgcaatgcttgtgaaagagtgtgaaacacaggcattgtaacattgtgattggccaa 24115953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 14229485 - 14229429
Alignment:
Q  125 cacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtg 182  Q
    ||||||||||| |||||||||| |||||||| | |||||||||| |||||||||||||    
T  14229485 cacttgggtgacatagagttggatgacattggc-aatcacaatgtcacaatgcttgtg 14229429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 32545867 - 32545929
Alignment:
Q  199 aagcattgtggcattatgattggccaa---caccaatgtcacccaactctatgttacccaagt 258  Q
    |||||||||| ||||||||||||||||   ||||||||||||  |||||||||| ||||||||    
T  32545867 aagcattgtgacattatgattggccaatgtcaccaatgtcactaaactctatgtcacccaagt 32545929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 126 - 182
Target Start/End: Original strand, 37961712 - 37961768
Alignment:
Q  126 acttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtg 182  Q
    |||||||||  |||||||||||||||||||||  |||||||||||| |||| |||||    
T  37961712 acttgggtggcatagagttgggtgacattgaccgatcacaatgccataatgtttgtg 37961768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 258
Target Start/End: Original strand, 16514500 - 16514565
Alignment:
Q  196 cacaagcattgtggcattatgattggccaa---caccaatgtcacccaactctatgttacccaagt 258  Q
    ||||||||||||| |||| ||||||| |||   ||||||| |||||||||||||||| ||||||||    
T  16514500 cacaagcattgtgacattgtgattggtcaatgtcaccaatctcacccaactctatgtcacccaagt 16514565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 265
Target Start/End: Complemental strand, 37633020 - 37632981
Alignment:
Q  226 caccaatgtcacccaactctatgttacccaagtattttcc 265  Q
    ||||||||||||| |||||||||| |||||||||||||||    
T  37633020 caccaatgtcaccaaactctatgtcacccaagtattttcc 37632981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 182
Target Start/End: Original strand, 2828596 - 2828646
Alignment:
Q  132 gtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtg 182  Q
    |||| ||||||||||||||||||| | |||||||||| || ||||||||||    
T  2828596 gtgacatagagttgggtgacattggccaatcacaatgtcaaaatgcttgtg 2828646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 261
Target Start/End: Complemental strand, 9173018 - 9172984
Alignment:
Q  227 accaatgtcacccaactctatgttacccaagtatt 261  Q
    ||||||||||||||||||||||| |||||||||||    
T  9173018 accaatgtcacccaactctatgtcacccaagtatt 9172984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 187
Target Start/End: Original strand, 14464560 - 14464622
Alignment:
Q  125 cacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaaga 187  Q
    |||||| |||| ||||||||| |||||||||   |||||||||| |||||| |||||||||||    
T  14464560 cacttgtgtgacatagagttgagtgacattggtcaatcacaatgtcacaatacttgtgaaaga 14464622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 397
Target Start/End: Original strand, 18142679 - 18142760
Alignment:
Q  315 ggataaatcaggagaaaggacatacatcaagaggtagcaccgacatcctaattaggttgacatcccgatgaaactccatccta 397  Q
    ||||||| ||||||||||| || ||||||||| ||||||||||||||| || ||  ||  |||||| ||||| ||||||||||    
T  18142679 ggataaaccaggagaaaggtcaaacatcaaga-gtagcaccgacatcccaactaaatttgcatcccaatgaacctccatccta 18142760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 249
Target Start/End: Original strand, 33018621 - 33018677
Alignment:
Q  196 cacaagcattgtggcattatgattggccaa---caccaatgtcacccaactctatgt 249  Q
    ||||||||||||| |||| |||||| ||||   ||||||||||||||||||||||||    
T  33018621 cacaagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgt 33018677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 14892372 - 14892297
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggc 222  Q
    |||||||||||  ||||||||||  ||||| ||| ||||||||||||||| |||| || |||| |||| ||||||||    
T  14892372 ggtgacattgatcaatcacaatgttacaatacttatgaaagagagagaaagacaaaca-tgtgacattgtgattggc 14892297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 258
Target Start/End: Complemental strand, 29508753 - 29508687
Alignment:
Q  196 cacaagcattgtggcatta-tgattggccaa---caccaatgtcacccaactctatgttacccaagt 258  Q
    ||||||||||||||||||  ||||||| |||   |||||||||||||||||||||||| ||| ||||    
T  29508753 cacaagcattgtggcatttgtgattggtcaatgtcaccaatgtcacccaactctatgtcacctaagt 29508687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 6e-41; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 121 - 265
Target Start/End: Original strand, 551166 - 551313
Alignment:
Q  121 gtaacacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattg 220  Q
    ||||||||||||||  |||||||||||||||||||   |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  551166 gtaacacttgggtggcatagagttgggtgacattggtcaatcacaatgccacaatgtttgtgaaagagagagaaacacaagcattgtggcattgtgattg 551265  T
Q  221 gccaa---caccaatgtcacccaactctatgttacccaagtattttcc 265  Q
    |||||   ||||||| ||| |||| ||||||| |||||| ||||||||    
T  551266 gccaatgtcaccaatatcatccaattctatgtcacccaaatattttcc 551313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 146 - 265
Target Start/End: Complemental strand, 12343212 - 12343099
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaacaccaatgtcacccaactct 245  Q
    |||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||      || ||||||||||||||||    
T  12343212 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattg------actaatgtcacccaactct 12343119  T
Q  246 atgttacccaagtattttcc 265  Q
    |||| |||||||||||||||    
T  12343118 atgtcacccaagtattttcc 12343099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 125 - 268
Target Start/End: Original strand, 10521854 - 10521991
Alignment:
Q  125 cacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggcca 224  Q
    ||||||||||| |||||||| |||||||||| | |||||||||| |||||||||| ||||||||||||||||||||||||| || |||| ||||||        
T  10521854 cacttgggtgacatagagtttggtgacattggccaatcacaatgtcacaatgcttatgaaagagagagaaacacaagcattatgacattgtgattg---- 10521949  T
Q  225 acaccaatgtcacccaactctatgttacccaagtattttccgtt 268  Q
      ||||||||||| ||||||||||| |||  |||||||||||||    
T  10521950 --accaatgtcactcaactctatgtcaccatagtattttccgtt 10521991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 146 - 258
Target Start/End: Original strand, 24618627 - 24618733
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaacaccaatgtcacccaactct 245  Q
    |||||||||||  |||||||||| || ||||||| |||||||||||||||||||||||||||| |||| ||||||| ||||      |||||||||||||    
T  24618627 ggtgacattgatcaatcacaatgtcataatgcttatgaaagagagagaaacacaagcattgtgacattgtgattggtcaac------gtcacccaactct 24618720  T
Q  246 atgttacccaagt 258  Q
    |||| ||||||||    
T  24618721 atgtcacccaagt 24618733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 146 - 213
Target Start/End: Complemental strand, 13043569 - 13043502
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcatt 213  Q
    |||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||    
T  13043569 ggtgacattggctaatcacaatatcacaatgcttgtgaaagagagagaaacacaagcattgtgacatt 13043502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 161 - 258
Target Start/End: Complemental strand, 24587558 - 24587458
Alignment:
Q  161 tcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa---caccaatgtcacccaactctatgttacccaag 257  Q
    |||||||| |||||||||||||||| || ||||||||||||||||||| |||| |||||| ||||   ||| |||||||||||||||||||| ||| |||    
T  24587558 tcacaatgtcacaatgcttgtgaaaaagcgagaaacacaagcattgtgacattgtgattgaccaatgtcactaatgtcacccaactctatgtcacctaag 24587459  T
Q  258 t 258  Q
    |    
T  24587458 t 24587458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 31654310 - 31654367
Alignment:
Q  125 cacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtg 182  Q
    ||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||    
T  31654310 cacttgggtgatatagagttgggtgacattggccaatcacaatgtcacaatgcttgtg 31654367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 141 - 219
Target Start/End: Original strand, 2315325 - 2315403
Alignment:
Q  141 agttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgatt 219  Q
    ||||||||||||||||  |||||||||| ||||||| ||||||||||||| |||||| ||||||| ||| ||| |||||    
T  2315325 agttgggtgacattgatcaatcacaatgtcacaatgtttgtgaaagagagcgaaacataagcattatggtattgtgatt 2315403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 196 - 265
Target Start/End: Complemental strand, 24975814 - 24975742
Alignment:
Q  196 cacaagcattgtggcattatgattggccaa---caccaatgtcacccaactctatgttacccaagtattttcc 265  Q
    |||||||||||||||||| |||||| ||||   ||||||||||| |||||||||||| |||||||||||||||    
T  24975814 cacaagcattgtggcattgtgattgaccaatgtcaccaatgtcagccaactctatgtcacccaagtattttcc 24975742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 24618734 - 24618677
Alignment:
Q  125 cacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtg 182  Q
    ||||||||||| ||||||||||||||| ||||| |||||||||| |||||||||||||    
T  24618734 cacttgggtgacatagagttgggtgacgttgaccaatcacaatgtcacaatgcttgtg 24618677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 178 - 258
Target Start/End: Complemental strand, 31654385 - 31654311
Alignment:
Q  178 ttgtgaaagagagagaaacacaagcattgtggcattatgattggccaacaccaatgtcacccaactctatgttacccaagt 258  Q
    ||||||||||||||||||||||||||||||| |||| |||||||      |||||||||||||||||||| | ||||||||    
T  31654385 ttgtgaaagagagagaaacacaagcattgtgacattgtgattgg------ccaatgtcacccaactctatatcacccaagt 31654311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 160 - 258
Target Start/End: Complemental strand, 17751000 - 17750900
Alignment:
Q  160 atcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa---caccaatgtcacccaactctatgttacccaa 256  Q
    ||||||||| |||||||||||||||||||||| ||| |||| ||||||| |||| |||||| ||||   |||||||||||  ||||||||||| || |||    
T  17751000 atcacaatgtcacaatgcttgtgaaagagagataaatacaaacattgtgacattgtgattgaccaatgtcaccaatgtca-tcaactctatgtcacacaa 17750902  T
Q  257 gt 258  Q
    ||    
T  17750901 gt 17750900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 126 - 182
Target Start/End: Original strand, 12343106 - 12343162
Alignment:
Q  126 acttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtg 182  Q
    |||||||||| ||||||||||||||||||    ||||||||||||||||||||||||    
T  12343106 acttgggtgacatagagttgggtgacattagtcaatcacaatgccacaatgcttgtg 12343162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 179
Target Start/End: Complemental strand, 2315437 - 2315383
Alignment:
Q  125 cacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgctt 179  Q
    |||||| |||| |||||||| ||||||||||| |||||||||| ||| |||||||    
T  2315437 cacttgtgtgacatagagttaggtgacattgaataatcacaataccataatgctt 2315383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 249
Target Start/End: Original strand, 12343176 - 12343232
Alignment:
Q  196 cacaagcattgtggcattatgattggccaa---caccaatgtcacccaactctatgt 249  Q
    ||||||||||||| |||| |||||||||||   ||||||| ||||||||||||||||    
T  12343176 cacaagcattgtgacattgtgattggccaatgtcaccaatctcacccaactctatgt 12343232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 362
Target Start/End: Complemental strand, 1110549 - 1110504
Alignment:
Q  317 ataaatcaggagaaaggacatacatcaagaggtagcaccgacatcc 362  Q
    |||| ||||||||||||||||||||||||||| | || ||||||||    
T  1110549 ataagtcaggagaaaggacatacatcaagaggaaacaacgacatcc 1110504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 373
Target Start/End: Complemental strand, 22705401 - 22705352
Alignment:
Q  324 aggagaaaggacatacatcaagaggtagcaccgacatcctaattaggttg 373  Q
    |||||||| |||| ||||||||||||| ||||||||||| || |||||||    
T  22705401 aggagaaatgacacacatcaagaggtaacaccgacatcccaactaggttg 22705352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 551277 - 551241
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtg 182  Q
    |||||||||| | ||||||||||||||||||||||||    
T  551277 ggtgacattggccaatcacaatgccacaatgcttgtg 551241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 412
Target Start/End: Complemental strand, 12436040 - 12435952
Alignment:
Q  324 aggagaaaggacatacatcaagaggtagcaccgacatcctaattaggttgacatcccgatgaaactccatcctaagacgccaagctcaa 412  Q
    |||||| ||||||| ||||| |||| | || |||||||| || ||||||| || |||||  || |||||||||| | ||||||||||||    
T  12436040 aggagagaggacatgcatcaggaggcatcatcgacatcccaactaggttggcaccccgacaaacctccatcctatgccgccaagctcaa 12435952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 146 - 265
Target Start/End: Complemental strand, 41753076 - 41752954
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa---caccaatgtcacccaac 242  Q
    |||||||||| | ||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||   |||||||||||||||||    
T  41753076 ggtgacattggccaatcacaatgccacaatgcttgtgaaagagaaagaaacacaaacattgtggcattgtgattggccaatgtcaccaatgtcacccaac 41752977  T
Q  243 tctatgttacccaagtattttcc 265  Q
    ||||||| |||||||||||||||    
T  41752976 tctatgtcacccaagtattttcc 41752954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 125 - 265
Target Start/End: Original strand, 43139714 - 43139857
Alignment:
Q  125 cacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggcca 224  Q
    |||||| |||| ||||||||||||||||| |   |||||||||| || ||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  43139714 cacttgagtgacatagagttgggtgacatcggtcaatcacaatgtcagaatgcttgtgaaagagagagaaacacaagcattgtggcattgttattggcca 43139813  T
Q  225 a---caccaatgtcacccaactctatgttacccaagtattttcc 265  Q
    |   |||||||||||||||||||||||| |||||| ||||||||    
T  43139814 atgtcaccaatgtcacccaactctatgtcacccaaatattttcc 43139857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 125 - 258
Target Start/End: Complemental strand, 33689309 - 33689173
Alignment:
Q  125 cacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggcca 224  Q
    ||||||||||| || |||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||| |||    
T  33689309 cacttgggtgacattgagttgggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgattgacca 33689210  T
Q  225 a---caccaatgtcacccaactctatgttacccaagt 258  Q
    |   || ||||||||||||||||||||| || |||||    
T  33689209 atatcatcaatgtcacccaactctatgtcacacaagt 33689173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 146 - 267
Target Start/End: Original strand, 51046099 - 51046223
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa---caccaatgtcacccaac 242  Q
    |||||||||||  ||||| |||| ||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||   ||||||||||| |||||    
T  51046099 ggtgacattgatcaatcataatgtcacaatgtttgtgaaagagagagaaacacaagcattatggcattgtgattggccaatgtcaccaatgtcatccaac 51046198  T
Q  243 tctatgttacccaagtattttccgt 267  Q
    ||||||| |||||||||||||||||    
T  51046199 tctatgtcacccaagtattttccgt 51046223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 146 - 265
Target Start/End: Original strand, 47492073 - 47492195
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa---caccaatgtcacccaac 242  Q
    |||||||||| | |||||||||| |||||||||||||||| |||||||||||||||||||||| |||| |||||||||||    ||||||||||||||||    
T  47492073 ggtgacattggccaatcacaatgtcacaatgcttgtgaaaaagagagaaacacaagcattgtgacattgtgattggccaatatgaccaatgtcacccaac 47492172  T
Q  243 tctatgttacccaagtattttcc 265  Q
    ||||||| |||||| ||||||||    
T  47492173 tctatgtcacccaactattttcc 47492195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 122 - 258
Target Start/End: Original strand, 47677257 - 47677387
Alignment:
Q  122 taacacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattgg 221  Q
    ||||||||| |||| |||||||| ||||||||||||  ||||||||| ||||||||||||||||||||||||||||||| ||||||| |||| ||||||     
T  47677257 taacacttgtgtgacatagagtttggtgacattgaccgatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattg- 47677355  T
Q  222 ccaacaccaatgtcacccaactctatgttacccaagt 258  Q
         | ||||||||||||||||||||| || |||||    
T  47677356 -----atcaatgtcacccaactctatgtcacacaagt 47677387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 146 - 225
Target Start/End: Original strand, 1801472 - 1801551
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa 225  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  1801472 ggtgacattggccaatcacaatgccacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaa 1801551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 148 - 258
Target Start/End: Original strand, 30734430 - 30734543
Alignment:
Q  148 tgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa---caccaatgtcacccaactc 244  Q
    ||||||||||  ||||||||| |||||||||||||||||| ||||||||||||| ||| || |||| |||||||||||   ||||||||||||| |||||    
T  30734430 tgacattgaccgatcacaatgtcacaatgcttgtgaaagatagagaaacacaagtattatgacattgtgattggccaatgtcaccaatgtcacctaactc 30734529  T
Q  245 tatgttacccaagt 258  Q
    ||||| ||||||||    
T  30734530 tatgtcacccaagt 30734543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 122 - 258
Target Start/End: Complemental strand, 18321787 - 18321648
Alignment:
Q  122 taacacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattgg 221  Q
    |||||||||| ||| |||||||||| ||||||||   |||||||||| |||||||| ||||||| ||||| |||||||| | ||||| |||| ||||||     
T  18321787 taacacttggatgacatagagttggatgacattggtcaatcacaatgtcacaatgcatgtgaaaaagagaaaaacacaaactttgtgacattgtgattga 18321688  T
Q  222 ccaa---caccaatgtcacccaactctatgttacccaagt 258  Q
    ||||   ||||||| ||||||||||||||||| |||||||    
T  18321687 ccaatgtcaccaatatcacccaactctatgttgcccaagt 18321648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 125 - 225
Target Start/End: Original strand, 30476479 - 30476579
Alignment:
Q  125 cacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggcca 224  Q
    |||||| |||| | |||| | |||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||| |||    
T  30476479 cacttgtgtgacagagagctaggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgattgacca 30476578  T
Q  225 a 225  Q
    |    
T  30476579 a 30476579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 122 - 213
Target Start/End: Original strand, 29031716 - 29031807
Alignment:
Q  122 taacacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcatt 213  Q
    |||||||||  ||| |||||||| ||||| ||||   |||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||    
T  29031716 taacacttgcatgacatagagttaggtgatattggtcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacatt 29031807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 125 - 205
Target Start/End: Original strand, 49418696 - 49418776
Alignment:
Q  125 cacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcatt 205  Q
    ||||||||||| |||||||||||||| ||||   |||||||||| || |||  ||||||||||||||||||||||||||||    
T  49418696 cacttgggtgacatagagttgggtgatattggtcaatcacaatgtcataatatttgtgaaagagagagaaacacaagcatt 49418776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 196 - 258
Target Start/End: Complemental strand, 1801508 - 1801443
Alignment:
Q  196 cacaagcattgtggcattatgattggccaa---caccaatgtcacccaactctatgttacccaagt 258  Q
    |||||||||||||||||| |||||||||||   |||||||||||||||||||||||| ||||||||    
T  1801508 cacaagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagt 1801443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 159 - 221
Target Start/End: Complemental strand, 50524801 - 50524739
Alignment:
Q  159 aatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattgg 221  Q
    ||||||||||  || ||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  50524801 aatcacaatgttacgatgcttgtgaaagagagagaaacacaaacattgtgacattatgattgg 50524739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 125 - 258
Target Start/End: Complemental strand, 55223365 - 55223229
Alignment:
Q  125 cacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggcca 224  Q
    ||||||||||| ||||||||  |||| ||||   ||||| |||| |||||||||||||||||||||||||||| ||| ||| |   ||| |||||| |||    
T  55223365 cacttgggtgacatagagttaagtgatattggtcaatcataatgtcacaatgcttgtgaaagagagagaaacataagtattctaatattgtgattgacca 55223266  T
Q  225 a---caccaatgtcacccaactctatgttacccaagt 258  Q
    |   ||||||||||||| |||||||||| || |||||    
T  55223265 atatcaccaatgtcacctaactctatgtcacacaagt 55223229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 1801627 - 1801571
Alignment:
Q  126 acttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtg 182  Q
    |||||||||| ||||||||||||||||||| | |||||||||||||||||| |||||    
T  1801627 acttgggtgacatagagttgggtgacattggccaatcacaatgccacaatgtttgtg 1801571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 146 - 249
Target Start/End: Original strand, 30580782 - 30580888
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa---caccaatgtcacccaac 242  Q
    ||||| |||||| ||||| |||| ||||||  |||||||||||| ||||||||||||| |||| |||| |||||| ||||   ||| ||||||||||||     
T  30580782 ggtgatattgaccaatcataatgtcacaatatttgtgaaagagatagaaacacaagcactgtgacattgtgattgaccaatgtcacaaatgtcacccaat 30580881  T
Q  243 tctatgt 249  Q
    |||||||    
T  30580882 tctatgt 30580888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 143 - 207
Target Start/End: Complemental strand, 50550090 - 50550026
Alignment:
Q  143 ttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgt 207  Q
    ||||||||||||||  ||||| |||| || |||| ||||||||||||||||||||||||||||||    
T  50550090 ttgggtgacattgatcaatcataatgtcataatgtttgtgaaagagagagaaacacaagcattgt 50550026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 191 - 265
Target Start/End: Original strand, 1801566 - 1801634
Alignment:
Q  191 agaaacacaagcattgtggcattatgattggccaacaccaatgtcacccaactctatgttacccaagtattttcc 265  Q
    |||||||||| |||||||||||| |||||||||||      |||||||||||||||||| |||||||||||||||    
T  1801566 agaaacacaaacattgtggcattgtgattggccaa------tgtcacccaactctatgtcacccaagtattttcc 1801634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 196 - 258
Target Start/End: Original strand, 41753040 - 41753105
Alignment:
Q  196 cacaagcattgtggcattatgattggccaa---caccaatgtcacccaactctatgttacccaagt 258  Q
    |||||||||||||||||| |||||||||||   |||||||||||| ||||||||||| ||||||||    
T  41753040 cacaagcattgtggcattgtgattggccaatgtcaccaatgtcactcaactctatgtcacccaagt 41753105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 47677388 - 47677331
Alignment:
Q  125 cacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtg 182  Q
    |||||| |||| ||||||||||||||||||||  |||||||||| ||||||| |||||    
T  47677388 cacttgtgtgacatagagttgggtgacattgatcaatcacaatgtcacaatgtttgtg 47677331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 1801566 - 1801522
Alignment:
Q  138 tagagttgggtgacattgactaatcacaatgccacaatgcttgtg 182  Q
    |||||||||||||||||| | |||||||||||||||||| |||||    
T  1801566 tagagttgggtgacattggccaatcacaatgccacaatgtttgtg 1801522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 258
Target Start/End: Complemental strand, 45103171 - 45103106
Alignment:
Q  196 cacaagcattgtggcattatgattggccaa---caccaatgtcacccaactctatgttacccaagt 258  Q
    ||||||||||||| |||| ||||||  |||   |||||||||||||||||||||||| ||||||||    
T  45103171 cacaagcattgtgacattgtgattgatcaatatcaccaatgtcacccaactctatgtcacccaagt 45103106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 176
Target Start/End: Complemental strand, 49414556 - 49414505
Alignment:
Q  125 cacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatg 176  Q
    ||||||||||| ||||||||||||||||||| | ||| |||||| |||||||    
T  49414556 cacttgggtgacatagagttgggtgacattggccaattacaatgtcacaatg 49414505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 373
Target Start/End: Complemental strand, 26430343 - 26430294
Alignment:
Q  324 aggagaaaggacatacatcaagaggtagcaccgacatcctaattaggttg 373  Q
    |||||| |||||||||||||||||| | || ||||||||||| |||||||    
T  26430343 aggagagaggacatacatcaagaggcatcatcgacatcctaactaggttg 26430294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 191
Target Start/End: Original strand, 45103135 - 45103180
Alignment:
Q  146 ggtgacattgactaatcacaatgccacaatgcttgtgaaagagaga 191  Q
    ||||| |||||  |||||||||| ||||||||||||||||||||||    
T  45103135 ggtgatattgatcaatcacaatgtcacaatgcttgtgaaagagaga 45103180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 1272558 - 1272590
Alignment:
Q  226 caccaatgtcacccaactctatgttacccaagt 258  Q
    |||||||||||||||||||||||| ||||||||    
T  1272558 caccaatgtcacccaactctatgtcacccaagt 1272590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 412
Target Start/End: Original strand, 16309657 - 16309745
Alignment:
Q  324 aggagaaaggacatacatcaagaggtagcaccgacatcctaattaggttgacatcccgatgaaactccatcctaagacgccaagctcaa 412  Q
    |||||| |||||| |||||||||||||||  |||||||| || || |||| || ||||  ||| |||||||||| | |||||| |||||    
T  16309657 aggagagaggacagacatcaagaggtagcttcgacatcccaactaagttggcaccccggagaacctccatcctatgccgccaaactcaa 16309745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 412
Target Start/End: Original strand, 18490651 - 18490739
Alignment:
Q  324 aggagaaaggacatacatcaagaggtagcaccgacatcctaattaggttgacatcccgatgaaactccatcctaagacgccaagctcaa 412  Q
    |||||| |||||| |||||||||||||||  |||||||| || || |||| || ||||  ||| |||||||||| | |||||| |||||    
T  18490651 aggagagaggacagacatcaagaggtagcttcgacatcccaactaagttggcaccccggagaacctccatcctatgccgccaaactcaa 18490739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 193
Target Start/End: Complemental strand, 45755195 - 45755128
Alignment:
Q  125 cacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagaga 193  Q
    ||||||||||||||||| |||| | |||||| | |||| ||| | |||||| |||||||||||||||||    
T  45755195 cacttgggtgatatagaattgg-taacattggccaatcgcaacgtcacaatccttgtgaaagagagaga 45755128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 159 - 265
Target Start/End: Original strand, 27259 - 27368
Alignment:
Q  159 aatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa---caccaatgtcacccaactctatgttaccca 255  Q
    |||||||||| || ||| ||||||||||||||||||||| ||||||||||||||| |||||||||||   |||||||||||||||||||||| | |||||    
T  27259 aatcacaatgtcataattcttgtgaaagagagagaaacagaagcattgtggcattgtgattggccaatatcaccaatgtcacccaactctatatcaccca 27358  T
Q  256 agtattttcc 265  Q
    ||||||||||    
T  27359 agtattttcc 27368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 155
Target Start/End: Complemental strand, 27361 - 27332
Alignment:
Q  126 acttgggtgatatagagttgggtgacattg 155  Q
    ||||||||||||||||||||||||||||||    
T  27361 acttgggtgatatagagttgggtgacattg 27332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 148 - 265
Target Start/End: Original strand, 49731 - 49842
Alignment:
Q  148 tgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaacaccaatgtcacccaactctat 247  Q
    |||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||      ||||||||||| ||||||||    
T  49731 tgacattgaccaatcacaatgtcacaatgcttgtgaaagaaagagaaacacaagcattgtggcattgtgattgg------ccaatgtcacctaactctat 49824  T
Q  248 gttacccaagtattttcc 265  Q
    || ||| |||||||||||    
T  49825 gtcaccgaagtattttcc 49842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 49835 - 49779
Alignment:
Q  126 acttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtg 182  Q
    |||| ||||| |||||||| |||||||||| | ||||||||||||||||||||||||    
T  49835 acttcggtgacatagagttaggtgacattggccaatcacaatgccacaatgcttgtg 49779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 258
Target Start/End: Complemental strand, 49765 - 49700
Alignment:
Q  196 cacaagcattgtggcattatgattggccaa---caccaatgtcacccaactctatgttacccaagt 258  Q
    ||||||||||||| |||| ||||||| |||   || ||||||||||||||||||||| ||||||||    
T  49765 cacaagcattgtgacattgtgattggtcaatgtcatcaatgtcacccaactctatgtcacccaagt 49700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 159 - 258
Target Start/End: Original strand, 7086 - 7187
Alignment:
Q  159 aatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattatgattggccaa---caccaatgtcacccaactctatgttaccca 255  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||   ||||||||||| |||||||||||| || ||    
T  7086 aatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcaccaatgtca-ccaactctatgtcacaca 7184  T
Q  256 agt 258  Q
    |||    
T  7185 agt 7187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 7109 - 7053
Alignment:
Q  196 cacaagcattgtggcattatgattggccaa---caccaatgtcacccaactctatgt 249  Q
    ||||||||||||| |||| |||||||| ||   ||||||||||||||||||||||||    
T  7109 cacaagcattgtgacattgtgattggctaatatcaccaatgtcacccaactctatgt 7053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 125 - 207
Target Start/End: Original strand, 2892 - 2974
Alignment:
Q  125 cacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgt 207  Q
    |||| |||||| |||||||||||||| |||||| |||||||||| ||||||| ||||||||||||||||||||||| ||||||    
T  2892 cactggggtgacatagagttgggtgatattgaccaatcacaatgtcacaatgtttgtgaaagagagagaaacacaaacattgt 2974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1033 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold1033
Description:

Target: scaffold1033; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 125 - 206
Target Start/End: Complemental strand, 2346 - 2265
Alignment:
Q  125 cacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattg 206  Q
    |||||| |||| ||||| ||||| ||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||    
T  2346 cacttgtgtgacatagaattgggcgacattgatcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattg 2265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1029 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold1029
Description:

Target: scaffold1029; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 125 - 206
Target Start/End: Complemental strand, 2346 - 2265
Alignment:
Q  125 cacttgggtgatatagagttgggtgacattgactaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattg 206  Q
    |||||| |||| ||||| ||||| ||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||    
T  2346 cacttgtgtgacatagaattgggcgacattgatcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattg 2265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 379
Target Start/End: Complemental strand, 16283 - 16227
Alignment:
Q  323 caggagaaaggacatacatcaagaggtagcaccgacatcctaattaggttgacatcc 379  Q
    |||||||||||||||  ||||||||  ||||||||||||| || |||||||||||||    
T  16283 caggagaaaggacatgtatcaagagaaagcaccgacatcccaactaggttgacatcc 16227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 205
Target Start/End: Original strand, 19161 - 19207
Alignment:
Q  159 aatcacaatgccacaatgcttgtgaaagagagagaaacacaagcatt 205  Q
    |||||||||| ||||||||||||| |||| |||||||||||| ||||    
T  19161 aatcacaatgtcacaatgcttgtggaagaaagagaaacacaaacatt 19207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 397
Target Start/End: Original strand, 2976 - 3041
Alignment:
Q  332 ggacatacatcaagaggtagcaccgacatcctaattaggttgacatcccgatgaaactccatccta 397  Q
    |||||| |||||||||| | |||||||||||  ||||||||| |||||||  ||| ||||||||||    
T  2976 ggacatgcatcaagaggaaacaccgacatcccgattaggttggcatcccggggaacctccatccta 3041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0437 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0437
Description:

Target: scaffold0437; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 412
Target Start/End: Original strand, 14322 - 14410
Alignment:
Q  324 aggagaaaggacatacatcaagaggtagcaccgacatcctaattaggttgacatcccgatgaaactccatcctaagacgccaagctcaa 412  Q
    |||||| |||||| ||||||||||| | || |||||||| || ||||||| ||||||||   | |||||||||| | |||||| |||||    
T  14322 aggagagaggacagacatcaagaggcatcatcgacatcccaactaggttggcatcccgagagacctccatcctatgccgccaaactcaa 14410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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