View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17056_low_9 (Length: 353)
Name: NF17056_low_9
Description: NF17056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17056_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-157; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 10 - 340
Target Start/End: Complemental strand, 36196612 - 36196273
Alignment:
| Q |
10 |
gcagtaatttcgtctgtggttctttaaagggagggaggaattcactttcttctttgataaaatggtttgaactatgtttggaatggttgcttctgttaac |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36196612 |
gcagtaatttcgtctgtggttctttaaagggagggaggaattcactttcttctttgataaaatggtttgaactatgtttggaatggttgcttctgttaac |
36196513 |
T |
|
| Q |
110 |
aagtcacttttgctaaatagtatagcatattgtagctgttttattttcaaagtttaatttagatttttgaatattaacttggagtgcaaggctatgcttt |
209 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
36196512 |
aagtcacttttgctaaatagtatagcatattgtagctgttttattttcaaattttaatttagattttttaatattaacttggagtgcaaggctatgcttt |
36196413 |
T |
|
| Q |
210 |
gacctgataaataattgtataat---------tattgtacaatgtttgaaatctcaaaattttaggagatgttttgtcgatttttctacacagatccttg |
300 |
Q |
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||||||||||||||||||||||| | |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
36196412 |
gacctgataaataattgtataattgtaaaggcttttgtactatgtttgaaatctcaatattttaggagatgttttgtcgatttttctacacagatccttg |
36196313 |
T |
|
| Q |
301 |
gaatacaagttttataatttagtagtctgtttggttgatg |
340 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||| |
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| T |
36196312 |
caatacgagttttataatttagtagtctgtttggttgatg |
36196273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 10 - 340
Target Start/End: Complemental strand, 36209736 - 36209405
Alignment:
| Q |
10 |
gcagtaatttcgtctgtggttctttaaagggagggaggaattcactttcttctttgataaaatggtttgaactatgtttggaatggttgcttctgttaac |
109 |
Q |
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||||||||||| |||||||||||||||||||||||| |||||||| ||| ||| | |||| |||||||||||||||||||| ||||||| |||||||||| |
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| T |
36209736 |
gcagtaatttcctctgtggttctttaaagggagggaagaattcaccttcctctctaataagatggtttgaactatgtttggtatggttggttctgttaac |
36209637 |
T |
|
| Q |
110 |
aagtcact-tttgctaaatagtatagcatattgtagctgttttattttcaaagtttaatttagatttttgaatattaacttggagtgcaaggctatgctt |
208 |
Q |
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|||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36209636 |
aagtcattgtttgctaaatagtataacatattgtagctgttttattttcaaagtttaatttagatttttgaatattaacttggagtgcaaggctatgctt |
36209537 |
T |
|
| Q |
209 |
tgacctgataaataattgtataattattgtacaatgtttgaaatctcaaaattttaggagatgttttgtcgatttttctacacagatccttggaatacaa |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36209536 |
tgacctgataaataattgtataattattgtacaatgtttgaaatctcaaaattttaggagatgttttgtcgatttttctacacagatccttggaatacaa |
36209437 |
T |
|
| Q |
309 |
gttttataatttagtagtctgtttggttgatg |
340 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |
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|
| T |
36209436 |
gttttataatttattagtctgtttggttgatg |
36209405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 10 - 307
Target Start/End: Complemental strand, 36184351 - 36184043
Alignment:
| Q |
10 |
gcagtaatttcgtctgtggttctttaaagggagggaggaattcactttcttctttgataaaatggtttgaactatgtttggaatggttgcttctgttaac |
109 |
Q |
| |
|
||||||||||| ||| |||||||| |||||||| |||||| | ||| |||| |||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
36184351 |
gcagtaatttccactgcggttctttcaagggaggagggaatttaacttcctcttcgataaaatggtttgaactatgtttggtatggttggttctgttaac |
36184252 |
T |
|
| Q |
110 |
aagtcacttttgctaaatagtatagcatattgtagctgttttattttcaaagtttaatttagatttttgaatattaacttggagtgcaaggctatg-ctt |
208 |
Q |
| |
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| |||||||||||||||||||||| ||||||||| ||||||||||||||||||| | |||||| ||||||| |||||||| ||||| ||||||||| || |
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| T |
36184251 |
atgtcacttttgctaaatagtataacatattgtaactgttttattttcaaagttaagtttagaattttgaaaattaactttgagtgtaaggctatgtttt |
36184152 |
T |
|
| Q |
209 |
tgacctgataaataattgtataa----------ttattgtacaatgtttgaaatctcaaaattttaggagatgttttgtcgatttttctacacagatcct |
298 |
Q |
| |
|
||||| ||||||||||||||||| | |||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
36184151 |
tgaccggataaataattgtataaattgtaaaggcttttgtactatgtttgaaatctcaatattttaggagatgttttgtctatttttctacacagatcct |
36184052 |
T |
|
| Q |
299 |
tggaataca |
307 |
Q |
| |
|
||||||||| |
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|
| T |
36184051 |
tggaataca |
36184043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 10 - 233
Target Start/End: Complemental strand, 36188295 - 36188068
Alignment:
| Q |
10 |
gcagtaatttcgtctgtggttctttaaagggagggaggaattcactttcttctttgataaaatggtttgaactatgtttggaatggttgcttctgtt--- |
106 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||| ||||||||| ||| ||| | |||||||||||||||||| |||||| |||||| ||||||| |
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|
| T |
36188295 |
gcagtaatttcctctgtggctctttaaagggaggggggaattcaccttcctctctaataaaatggtttgaactaggtttggtatggtttgttctgttgtt |
36188196 |
T |
|
| Q |
107 |
aacaagtcact-tttgctaaatagtatagcatattgtagctgttttattttcaaagtttaatttagatttttgaatattaacttggagtgcaaggctatg |
205 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
36188195 |
aacaagtcatggtttgctaaatagtataacatattgtaactgtttaattttcaaagtttaatttagaattttgaatattaacttggagtgcaaggctatg |
36188096 |
T |
|
| Q |
206 |
ctttgacctgataaataattgtataatt |
233 |
Q |
| |
|
||||||||||||||||||||||||||| |
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| T |
36188095 |
gtttgacctgataaataattgtataatt |
36188068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 35 - 195
Target Start/End: Complemental strand, 36200497 - 36200335
Alignment:
| Q |
35 |
aaagggagggaggaattcactttcttctttgataaaatggtttgaactatgtttggaatggttgcttctgttaacaagtcact-tttgctaaatagtata |
133 |
Q |
| |
|
|||| ||| ||||||||||||||| ||||||| ||||| ||||||||| |||||| |||||| ||||||||||||||| | |||||||||| | || |
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|
| T |
36200497 |
aaagagagagaggaattcactttcctctttgacaaaatagtttgaactcggtttggtatggttagttctgttaacaagtcgttgtttgctaaatgatgta |
36200398 |
T |
|
| Q |
134 |
gcatattgtagctgttttattttcaaagttt-aatttagatttttgaatattaacttggagtg |
195 |
Q |
| |
|
|||||||||||||||| |||||||||||| | |||||| ||||| ||||||| |||||||| |
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|
| T |
36200397 |
atatattgtagctgttttgttttcaaagtttcattttagaattttggatattaatttggagtg |
36200335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 149 - 225
Target Start/End: Complemental strand, 36201857 - 36201781
Alignment:
| Q |
149 |
tttattttcaaagtttaatttagatttttgaatattaacttggagtgcaaggctatgctttgacctgataaataatt |
225 |
Q |
| |
|
|||||||||||||||| ||||||| ||||| ||| | | || ||||||||||||||| ||| ||| ||||||||||| |
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|
| T |
36201857 |
tttattttcaaagtttcatttagaattttggataatgattttgagtgcaaggctatgttttaaccagataaataatt |
36201781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 139 - 227
Target Start/End: Complemental strand, 36212070 - 36211982
Alignment:
| Q |
139 |
ttgtagctgttttattttcaaagtttaatttagatttttgaatattaacttggagtgcaaggctatgctttgacctgataaataattgt |
227 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||| ||||| | | ||||| ||||||||| ||| | |||||| ||||||| |
|
|
| T |
36212070 |
ttgtagttgttttattttcaaagtttaatttagaattttggatattgatctagagtgtaaggctatgttttaatatgataagtaattgt |
36211982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 295 - 328
Target Start/End: Complemental strand, 36215610 - 36215577
Alignment:
| Q |
295 |
tccttggaatacaagttttataatttagtagtct |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
36215610 |
tccttggaatacaagttttataatttagtagtct |
36215577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 158 - 225
Target Start/End: Complemental strand, 36214346 - 36214279
Alignment:
| Q |
158 |
aaagtttaatttagatttttgaatattaacttggagtgcaaggctatgctttgacctgataaataatt |
225 |
Q |
| |
|
||||||| ||||||| ||||| ||| | | |||||||| ||| ||||| ||||||||||||||||||| |
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|
| T |
36214346 |
aaagtttcatttagaattttggatactgatttggagtgtaagtctatgttttgacctgataaataatt |
36214279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 227
Target Start/End: Complemental strand, 36190632 - 36190546
Alignment:
| Q |
141 |
gtagctgttttattttcaaagtttaatttagatttttgaatattaacttggagtgcaaggctatgctttgacctgataaataattgt |
227 |
Q |
| |
|
|||| ||||||||||||||||||||||||| | ||||| ||||| | | ||||| ||||||||| ||| | |||||| ||||||| |
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|
| T |
36190632 |
gtagttgttttattttcaaagtttaatttaaaattttggatattgatctagagtgtaaggctatgttttaatatgataagtaattgt |
36190546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 332
Target Start/End: Complemental strand, 36208720 - 36208659
Alignment:
| Q |
272 |
ttttgtcgatttttctacacagat-ccttggaatacaagttttataatttagtagtctgttt |
332 |
Q |
| |
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|||||| |||||||||| ||| || ||||| ||||||||||||||||||||| |||||||| |
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|
| T |
36208720 |
ttttgttgatttttctatacaaattccttgctatacaagttttataatttagtggtctgttt |
36208659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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