View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17057_high_2 (Length: 236)
Name: NF17057_high_2
Description: NF17057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17057_high_2 |
 | |
|
| [»] scaffold1175 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 35130162 - 35130026
Alignment:
| Q |
1 |
aagcatatagagaattcaactttctcaatggaatcagaaaacttgacgaggaggagattgaaaagtggaacaacgtcattttgactagaaataataggtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35130162 |
aagcatatagagaattcaactttctcaatggaatcagaaaacttgacgaggaggagattgaaaagtggaacaacgtcattttgactagaaataataggtt |
35130063 |
T |
|
| Q |
101 |
ggcgcctattgaatgagtagagtactatgctatttat |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35130062 |
ggcgcctattgaatgagtagagtactatgctatttat |
35130026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 35137378 - 35137239
Alignment:
| Q |
1 |
aagcatatagagaattcaactttctcaatggaatcagaaaacttgacgaggaggagattgaaaagtggaacaacgtcattttgactagaaataataggtt |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35137378 |
aagcatatgtagaattcaactttctcaatggaatcagaaaactcaacgagcaggagattgaaaagtggaacaacgtcattttgactagaaataataggtt |
35137279 |
T |
|
| Q |
101 |
ggcgcctattgaatgagtagagtactatgctatttatttgaat |
143 |
Q |
| |
|
|| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
35137278 |
cgcacctattgaatgagtag---actatgctatttatttgaat |
35137239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 35130027 - 35129978
Alignment:
| Q |
181 |
atgggaaaaaacatgttcaaacaattcagcagaattgtgcatgatgatgt |
230 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
35130027 |
atgggaaaaaacatgttcaaacaattcagcagagttgtgcatgatgatgt |
35129978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 226
Target Start/End: Complemental strand, 35137240 - 35137195
Alignment:
| Q |
181 |
atgggaaaaaacatgttcaaacaattcagcagaattgtgcatgatg |
226 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || |||||||||| |
|
|
| T |
35137240 |
atgggaaaaaacatgttcaaacaattgagcaggatagtgcatgatg |
35137195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 35122013 - 35121968
Alignment:
| Q |
29 |
tggaatcagaaaacttgacgaggaggagattgaaaagtggaacaac |
74 |
Q |
| |
|
|||||| ||||||||| | ||||| ||||||||||||||||||||| |
|
|
| T |
35122013 |
tggaattagaaaacttaatgaggaagagattgaaaagtggaacaac |
35121968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 6 - 80
Target Start/End: Complemental strand, 14276811 - 14276734
Alignment:
| Q |
6 |
tatagagaattcaactttctcaatggaatcagaaa---acttgacgaggaggagattgaaaagtggaacaacgtcatt |
80 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||| || ||||| |
|
|
| T |
14276811 |
tatagagaattcaactttctcaaaggaatcagaaaatcacttgatgaggaggagattgaaaagtggaacgacctcatt |
14276734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1175 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold1175
Description:
Target: scaffold1175; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 135 - 206
Alignment:
| Q |
3 |
gcatatagagaattcaactttctcaatggaatcagaaa---acttgacgaggaggagattgaaaagtggaac |
71 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |||| | ||||||||||||| |||||||||| |
|
|
| T |
135 |
gcatatagagaattcaactttctcaaaggaatcagaaaatcacttaatgaggaggagattgtaaagtggaac |
206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University