View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17057_low_1 (Length: 266)
Name: NF17057_low_1
Description: NF17057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17057_low_1 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 9 - 249
Target Start/End: Original strand, 24614526 - 24614766
Alignment:
| Q |
9 |
gattatacttatatgccggaagaaatatgtcaaatggagaagcttatcctacaagaacttggttggattttaacggttccaacaccttatgtttttcttg |
108 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
24614526 |
gattatatttatatgccggaagaaatatgtcaaatggagaagcttatcctacaagaacttggttggatattaacggttccaacaccttatgtttttcttg |
24614625 |
T |
|
| Q |
109 |
ttagaaacataagggcgtgtcttttatccgatgaagacaagatcatggagaacatggtgtttttcttctctgagctcagcttgacaaatcaatccattgt |
208 |
Q |
| |
|
|||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
24614626 |
ttagaaacatgagagcgtgtcttttatccgatcaagacaagatcatggagaacatggtgtttttcttctctgagctgagcttgacaaatcaatccattgt |
24614725 |
T |
|
| Q |
209 |
gtgcgactataagccttcaatgattgctgcttgttccgtgt |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24614726 |
gtgcgactataagccttcaatgattgctgcttgttccgtgt |
24614766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 9 - 249
Target Start/End: Complemental strand, 24116848 - 24116608
Alignment:
| Q |
9 |
gattatacttatatgccggaagaaatatgtcaaatggagaagcttatcctacaagaacttggttggattttaacggttccaacaccttatgtttttcttg |
108 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24116848 |
gattatatttatatgccggaagaaatatgtcaaatggagaagctaatcctacaaaaacttggttggattttaacggttccaacaccttatgtttttcttg |
24116749 |
T |
|
| Q |
109 |
ttagaaacataagggcgtgtcttttatccgatgaagacaagatcatggagaacatggtgtttttcttctctgagctcagcttgacaaatcaatccattgt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || || |||||||||||||||| || ||||| |
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|
| T |
24116748 |
ttagaaacataagggcgtgtcttttatccgatgaagacaagatcatggagaatatggtgtttttcttttcggaagtcagcttgacaaatcattctattgt |
24116649 |
T |
|
| Q |
209 |
gtgcgactataagccttcaatgattgctgcttgttccgtgt |
249 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
24116648 |
gtgcgactacaagccttcattgattgctgcttgttccgtgt |
24116608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 17 - 249
Target Start/End: Complemental strand, 24109133 - 24108901
Alignment:
| Q |
17 |
ttatatgccggaagaaatatgtcaaatggagaagcttatcctacaagaacttggttggattttaacggttccaacaccttatgtttttcttgttagaaac |
116 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
24109133 |
ttatatgccaaaagaaatatgtcaaatggagaagctaatcctacaagaacttggttggattttaacggttccaacaccttatgtttttcttattagaaac |
24109034 |
T |
|
| Q |
117 |
ataagggcgtgtcttttatccgatgaagacaagatcatggagaacatggtgtttttcttctctgagctcagcttgacaaatcaatccattgtgtgcgact |
216 |
Q |
| |
|
|||||| | || |||||||| |||||||| |||||||||||||| |||||||||||||| ||||| ||||||||||||||||| || ||||||||||||| |
|
|
| T |
24109033 |
ataaggacatgccttttatctgatgaagataagatcatggagaagatggtgtttttcttttctgaactcagcttgacaaatcattctattgtgtgcgact |
24108934 |
T |
|
| Q |
217 |
ataagccttcaatgattgctgcttgttccgtgt |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
24108933 |
ataagccttcaatgattgctgcttgttccgtgt |
24108901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 9 - 249
Target Start/End: Original strand, 23689627 - 23689867
Alignment:
| Q |
9 |
gattatacttatatgccggaagaaatatgtcaaatggagaagcttatcctacaagaacttggttggattttaacggttccaacaccttatgtttttcttg |
108 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23689627 |
gattatatttatatgccagaagaaatatgtcaaatggagaagcttatcctgcaagaacttggttggattttaacggttccaacaccttatgtttttcttg |
23689726 |
T |
|
| Q |
109 |
ttagaaacataagggcgtgtcttttatccgatgaagacaagatcatggagaacatggtgtttttcttctctgagctcagcttgacaaatcaatccattgt |
208 |
Q |
| |
|
|||||||| ||| ||| ||| ||| || |||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||| |||||||| |
|
|
| T |
23689727 |
ttagaaacgtaaaggcatgtgtttcttctgatgaagacaagatcatggagaacatggtgtttttcttttcggaactcagcttgacaaatcattccattgt |
23689826 |
T |
|
| Q |
209 |
gtgcgactataagccttcaatgattgctgcttgttccgtgt |
249 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
23689827 |
ctgcgactacaagccttcattgattgctgcttgttccgtgt |
23689867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 9 - 249
Target Start/End: Original strand, 23693085 - 23693325
Alignment:
| Q |
9 |
gattatacttatatgccggaagaaatatgtcaaatggagaagcttatcctacaagaacttggttggattttaacggttccaacaccttatgtttttcttg |
108 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
23693085 |
gattatatttatatgccagaagaaatatgtcaaatggagaagcttatcctgcaagaacttggttggattttaacagttccaacaccttatgtttttcttg |
23693184 |
T |
|
| Q |
109 |
ttagaaacataagggcgtgtcttttatccgatgaagacaagatcatggagaacatggtgtttttcttctctgagctcagcttgacaaatcaatccattgt |
208 |
Q |
| |
|
|||||||||||||||| ||| |||||| ||||||||||||||||||||| |||||||||||||||| ||||| |||||||| |||||||| || ||||| |
|
|
| T |
23693185 |
ttagaaacataagggcatgtaatttatcggatgaagacaagatcatggagcacatggtgtttttcttttctgaactcagcttaacaaatcattctattgt |
23693284 |
T |
|
| Q |
209 |
gtgcgactataagccttcaatgattgctgcttgttccgtgt |
249 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||| |||||| |
|
|
| T |
23693285 |
gtgcgactacaagccttctatgattgctgcttgtgccgtgt |
23693325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 9 - 249
Target Start/End: Original strand, 23711525 - 23711765
Alignment:
| Q |
9 |
gattatacttatatgccggaagaaatatgtcaaatggagaagcttatcctacaagaacttggttggattttaacggttccaacaccttatgtttttcttg |
108 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
23711525 |
gattatatttatatgccagaagaaatatgtcaaatggagaagcttatcctgcaagaacttggttggattttaacagttccaacaccttatgtttttcttg |
23711624 |
T |
|
| Q |
109 |
ttagaaacataagggcgtgtcttttatccgatgaagacaagatcatggagaacatggtgtttttcttctctgagctcagcttgacaaatcaatccattgt |
208 |
Q |
| |
|
|||||||||||||||| ||| |||||| ||||||||||||||||||||| |||||||||||||||| ||||| |||||||| |||||||| || ||||| |
|
|
| T |
23711625 |
ttagaaacataagggcatgtaatttatcggatgaagacaagatcatggagcacatggtgtttttcttttctgaactcagcttaacaaatcattctattgt |
23711724 |
T |
|
| Q |
209 |
gtgcgactataagccttcaatgattgctgcttgttccgtgt |
249 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||| |||||| |
|
|
| T |
23711725 |
gtgcgactacaagccttctatgattgctgcttgtgccgtgt |
23711765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 9 - 249
Target Start/End: Original strand, 23729981 - 23730221
Alignment:
| Q |
9 |
gattatacttatatgccggaagaaatatgtcaaatggagaagcttatcctacaagaacttggttggattttaacggttccaacaccttatgtttttcttg |
108 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
23729981 |
gattatatttatatgccagaagaaatatgtcaaatggagaagcttatcctgcaagaacttggttggattttaacagttccaacaccttatgtttttcttg |
23730080 |
T |
|
| Q |
109 |
ttagaaacataagggcgtgtcttttatccgatgaagacaagatcatggagaacatggtgtttttcttctctgagctcagcttgacaaatcaatccattgt |
208 |
Q |
| |
|
|||||||||||||||| ||| |||||| ||||||||||||||||||||| |||||||||||||||| ||||| |||||||| |||||||| || ||||| |
|
|
| T |
23730081 |
ttagaaacataagggcatgtaatttatcggatgaagacaagatcatggagcacatggtgtttttcttttctgaactcagcttaacaaatcattctattgt |
23730180 |
T |
|
| Q |
209 |
gtgcgactataagccttcaatgattgctgcttgttccgtgt |
249 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||| |||||| |
|
|
| T |
23730181 |
gtgcgactacaagccttctatgattgctgcttgtgccgtgt |
23730221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 9 - 249
Target Start/End: Original strand, 23748436 - 23748676
Alignment:
| Q |
9 |
gattatacttatatgccggaagaaatatgtcaaatggagaagcttatcctacaagaacttggttggattttaacggttccaacaccttatgtttttcttg |
108 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
23748436 |
gattatatttatatgccagaagaaatatgtcaaatggagaagcttatcctgcaagaacttggttggattttaacagttccaacaccttatgtttttcttg |
23748535 |
T |
|
| Q |
109 |
ttagaaacataagggcgtgtcttttatccgatgaagacaagatcatggagaacatggtgtttttcttctctgagctcagcttgacaaatcaatccattgt |
208 |
Q |
| |
|
|||||||||||||||| ||| |||||| ||||||||||||||||||||| |||||||||||||||| ||||| |||||||| |||||||| || ||||| |
|
|
| T |
23748536 |
ttagaaacataagggcatgtaatttatcggatgaagacaagatcatggagcacatggtgtttttcttttctgaactcagcttaacaaatcattctattgt |
23748635 |
T |
|
| Q |
209 |
gtgcgactataagccttcaatgattgctgcttgttccgtgt |
249 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||| |||||| |
|
|
| T |
23748636 |
gtgcgactacaagccttctatgattgctgcttgtgccgtgt |
23748676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 9 - 249
Target Start/End: Original strand, 24061864 - 24062104
Alignment:
| Q |
9 |
gattatacttatatgccggaagaaatatgtcaaatggagaagcttatcctacaagaacttggttggattttaacggttccaacaccttatgtttttcttg |
108 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24061864 |
gattatatttatatgccagaagaaatatgtcaaatggagaagcttatcctgcaagaacttggttggattttaacggttccaacaccttatgtttttcttg |
24061963 |
T |
|
| Q |
109 |
ttagaaacataagggcgtgtcttttatccgatgaagacaagatcatggagaacatggtgtttttcttctctgagctcagcttgacaaatcaatccattgt |
208 |
Q |
| |
|
|||||||| ||| ||| ||| ||| || |||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||| |||||||| |
|
|
| T |
24061964 |
ttagaaacgtaaaggcatgtgtttcttctgatgaagacaagatcatggagaacatggtgtttttcttttcggaactcagcttgacaaatcattccattgt |
24062063 |
T |
|
| Q |
209 |
gtgcgactataagccttcaatgattgctgcttgttccgtgt |
249 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
24062064 |
ctgcgactacaagccttcattgattgctgcttgttccgtgt |
24062104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 138 - 240
Target Start/End: Original strand, 11390762 - 11390864
Alignment:
| Q |
138 |
gatgaagacaagatcatggagaacatggtgtttttcttctctgagctcagcttgacaaatcaatccattgtgtgcgactataagccttcaatgattgctg |
237 |
Q |
| |
|
|||||||||||||| ||||| || |||||||||||||| || ||||| ||||||||| || | || |||||||| |||||||| ||||| |||||||||| |
|
|
| T |
11390762 |
gatgaagacaagatgatggaaaatatggtgtttttcttttcagagctgagcttgacacattattcaattgtgtgtgactataaaccttctatgattgctg |
11390861 |
T |
|
| Q |
238 |
ctt |
240 |
Q |
| |
|
||| |
|
|
| T |
11390862 |
ctt |
11390864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 138 - 240
Target Start/End: Complemental strand, 11419862 - 11419760
Alignment:
| Q |
138 |
gatgaagacaagatcatggagaacatggtgtttttcttctctgagctcagcttgacaaatcaatccattgtgtgcgactataagccttcaatgattgctg |
237 |
Q |
| |
|
|||||||||||||| ||||| || |||||||||||||| || ||||| ||||||||| || | || |||||||| |||||||| ||||| |||||||||| |
|
|
| T |
11419862 |
gatgaagacaagatgatggaaaatatggtgtttttcttttcagagctgagcttgacacattattcaattgtgtgtgactataaaccttctatgattgctg |
11419763 |
T |
|
| Q |
238 |
ctt |
240 |
Q |
| |
|
||| |
|
|
| T |
11419762 |
ctt |
11419760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 115
Target Start/End: Original strand, 11390684 - 11390754
Alignment:
| Q |
45 |
gagaagcttatcctacaagaacttggttggattttaacggttccaacaccttatgtttttcttgttagaaa |
115 |
Q |
| |
|
||||||||||| || ||| |||| | ||||| |||||| ||| ||||||||||||| || ||||||||||| |
|
|
| T |
11390684 |
gagaagcttatactgcaaaaactggattggaatttaacagttacaacaccttatgtgttccttgttagaaa |
11390754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 115
Target Start/End: Complemental strand, 11419940 - 11419870
Alignment:
| Q |
45 |
gagaagcttatcctacaagaacttggttggattttaacggttccaacaccttatgtttttcttgttagaaa |
115 |
Q |
| |
|
||||||||||| || ||| |||| | ||||| |||||| ||| ||||||||||||| || ||||||||||| |
|
|
| T |
11419940 |
gagaagcttatactgcaaaaactggattggaatttaacagttacaacaccttatgtgttccttgttagaaa |
11419870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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