View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17058_low_1 (Length: 612)
Name: NF17058_low_1
Description: NF17058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17058_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 590; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 1 - 598
Target Start/End: Complemental strand, 38816583 - 38815986
Alignment:
| Q |
1 |
atgaagtctcggtgctagatatttatgggagatatttatttgtgaagtttctttctaaggctttcttgttgtgtgttcaggtgaagatttgagtgatctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38816583 |
atgaagtctcggtgctagatatttatgggagatatttatttgtgaagtttctttctaaggctttcttgttgtgtgttcaggtgaagatttgagtgatctt |
38816484 |
T |
|
| Q |
101 |
gctgtggaacattcaatttgcccttctaaagatgaaggaggaatgcttgggtgggtgagaaagggacaaatggtatgctgttgtttaggtttaattaaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38816483 |
gctgtggaacattcaatttgcccttctaaagatgaaggaggaatgcttgggtgggtgagaaagggacaaatggtatgctgttgtttaggtttaattaaac |
38816384 |
T |
|
| Q |
201 |
cttgttcttagggttttacattttgtctagattttgcagttggctactttttgtggttacagttggtatacatcacggccttatgtaaattaaactgact |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38816383 |
cttgttcttagggttttacattttgtctagattttgcagttggctactttttgtggttacagttggtatacatcacggccttatgtaaattaaactgact |
38816284 |
T |
|
| Q |
301 |
ttgtctgttagagaagggtatatagttgtatgaggtttctttgggtaggtgagaaattgaggttcaaaggatacaatataccttttcttgcattttcttt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38816283 |
ttgtctgttagagaagggtatatagttgtatgaggtttctttgggtaggtgagaaattgaggttcaaaggatacaatataccttttcttgcattttcttt |
38816184 |
T |
|
| Q |
401 |
cactgagttatgataattgtgcatgtgattctgtgaagggaattggataagatagaaatgtaaacctagttatagaagtgtaatttttaaaattaatttt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38816183 |
cactgagttatgataattgtgcatgtgattctgtgaagggaattggataagatagaaatgtaaacctagttatagaagtgtaatttttaaaattaatttt |
38816084 |
T |
|
| Q |
501 |
actgttgttgggaaattctactttaattgtggtctgcctctaaccaccttaattgcggcatttaggttttccctcattgtcgcttccaacaccttcat |
598 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
38816083 |
actgttgttgggaaattctactttaattgtggactgcctctaaccaccttaattgcggcatttgggttttccctcattgtcgcttccaacaccttcat |
38815986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 67 - 216
Target Start/End: Complemental strand, 38821928 - 38821782
Alignment:
| Q |
67 |
tgttgtgtgttcaggtgaagatttgagtgatcttgctgtggaacattcaatttgcccttctaaagatgaaggaggaatgcttgggtgggtgagaaaggga |
166 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||||| |||| | ||||| |||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
38821928 |
tgttgtgtgtccaggtgaagatttgagcgatcttgctgtggactattcggtgtgcccatctaaagaagaaggaggaaggcttgggtgggtgagaaaggga |
38821829 |
T |
|
| Q |
167 |
caaatggtatgctgttgtttaggtttaattaaaccttgttcttagggttt |
216 |
Q |
| |
|
||||||||| || ||||||| ||| ||||| |||||||||||||||| |
|
|
| T |
38821828 |
caaatggta---tgatgtttagatttgcttaaatcttgttcttagggttt |
38821782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 502
Target Start/End: Complemental strand, 38821591 - 38821542
Alignment:
| Q |
453 |
tagaaatgtaaacctagttatagaagtgtaatttttaaaattaattttac |
502 |
Q |
| |
|
||||||| || ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
38821591 |
tagaaatatagacctagttatagaagtgccttttttaaaattaattttac |
38821542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University